mRNA_F-serratus_M_contig971.21046.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig971.21046.1
Unique NamemRNA_F-serratus_M_contig971.21046.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig971.21046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig971contigF-serratus_M_contig971:187053..187670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size619
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932752.8882828-CDS-F-serratus_M_contig971:187052..1873671622932752.8882828-CDS-F-serratus_M_contig971:187052..187367Fucus serratus maleCDSF-serratus_M_contig971 187053..187367 +
1690964456.8614836-CDS-F-serratus_M_contig971:187052..1873671690964456.8614836-CDS-F-serratus_M_contig971:187052..187367Fucus serratus maleCDSF-serratus_M_contig971 187053..187367 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932752.9062235-UTR-F-serratus_M_contig971:187367..1876701622932752.9062235-UTR-F-serratus_M_contig971:187367..187670Fucus serratus maleUTRF-serratus_M_contig971 187368..187670 +
1690964456.8743393-UTR-F-serratus_M_contig971:187367..1876701690964456.8743393-UTR-F-serratus_M_contig971:187367..187670Fucus serratus maleUTRF-serratus_M_contig971 187368..187670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig971.21046.1prot_F-serratus_M_contig971.21046.1Fucus serratus malepolypeptideF-serratus_M_contig971 187053..187367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig971.21046.1

>prot_F-serratus_M_contig971.21046.1 ID=prot_F-serratus_M_contig971.21046.1|Name=mRNA_F-serratus_M_contig971.21046.1|organism=Fucus serratus male|type=polypeptide|length=105bp
YVFSALRLRRSRRRTLPNHPPAWPSRSRFRYPTRTVSVRFGGNLDPRKPS
VWSRGQAQTCLRFTQGCSITNRVFEYFFFVWCIFFFLLSLRFFQLFSRSS
FAGV*
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mRNA from alignment at F-serratus_M_contig971:187053..187670+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig971.21046.1 ID=mRNA_F-serratus_M_contig971.21046.1|Name=mRNA_F-serratus_M_contig971.21046.1|organism=Fucus serratus male|type=mRNA|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig971:187053..187670+ (Fucus serratus male)
TACGTCTTCAGCGCCCTTCGATTGCGACGATCGCGGAGGAGGACTCTACC
CAACCACCCTCCCGCGTGGCCTAGCCGCTCACGGTTCAGATATCCAACGC
GCACAGTATCTGTGCGGTTTGGGGGCAACCTTGATCCAAGAAAACCTAGC
GTGTGGTCGCGAGGACAAGCCCAAACCTGCCTACGTTTTACACAGGGGTG
TAGCATAACGAACAGGGTGTTCGAGTATTTTTTTTTCGTATGGTGTATAT
TTTTCTTTCTACTTTCCCTTCGTTTTTTTCAGTTGTTCAGTCGCTCTTCG
TTCGCGGGAGTTTGAGATATAGTTGAATTTCGTTTTTTGCACTCTTTTAC
CTAGATATTTTCGTGTACTGCAGCGCGGTCAGTTGGGCTTCGAACCAATC
ACCCCACCCAAGCTACCGCTCTTTCAGGGCGCTTGGCTTTGTACTCCGGC
GGTCCCGTCTCCCCGGCCGTCCTCGCGAATCGCGGTTTGCATGCAAGGGG
TGTCCGCCGCGGGGAAATCGCCGTCAATTGGGAGAGAGGTTGAACAACAC
CGGGACGCTTTTGGGGGCGAGGATCGAACTCCAAGAGCGCTCTAAGTGAC
AACCAAGGAGACCGAGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig971:187053..187670+

>mRNA_F-serratus_M_contig971.21046.1 ID=mRNA_F-serratus_M_contig971.21046.1|Name=mRNA_F-serratus_M_contig971.21046.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig971:187053..187670+ (Fucus serratus male)
TACGTCTTCAGCGCCCTTCGATTGCGACGATCGCGGAGGAGGACTCTACC
CAACCACCCTCCCGCGTGGCCTAGCCGCTCACGGTTCAGATATCCAACGC
GCACAGTATCTGTGCGGTTTGGGGGCAACCTTGATCCAAGAAAACCTAGC
GTGTGGTCGCGAGGACAAGCCCAAACCTGCCTACGTTTTACACAGGGGTG
TAGCATAACGAACAGGGTGTTCGAGTATTTTTTTTTCGTATGGTGTATAT
TTTTCTTTCTACTTTCCCTTCGTTTTTTTCAGTTGTTCAGTCGCTCTTCG
TTCGCGGGAGTTTGATACGTCTTCAGCGCCCTTCGATTGCGACGATCGCG
GAGGAGGACTCTACCCAACCACCCTCCCGCGTGGCCTAGCCGCTCACGGT
TCAGATATCCAACGCGCACAGTATCTGTGCGGTTTGGGGGCAACCTTGAT
CCAAGAAAACCTAGCGTGTGGTCGCGAGGACAAGCCCAAACCTGCCTACG
TTTTACACAGGGGTGTAGCATAACGAACAGGGTGTTCGAGTATTTTTTTT
TCGTATGGTGTATATTTTTCTTTCTACTTTCCCTTCGTTTTTTTCAGTTG
TTCAGTCGCTCTTCGTTCGCGGGAGTTTGA
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