mRNA_F-serratus_M_contig971.21044.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig971.21044.1
Unique NamemRNA_F-serratus_M_contig971.21044.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig971.21044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig971contigF-serratus_M_contig971:152345..152907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size563
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig971.21044.1prot_F-serratus_M_contig971.21044.1Fucus serratus malepolypeptideF-serratus_M_contig971 152403..152798 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932752.6480138-UTR-F-serratus_M_contig971:152344..1524021622932752.6480138-UTR-F-serratus_M_contig971:152344..152402Fucus serratus maleUTRF-serratus_M_contig971 152345..152402 +
1690964456.825932-UTR-F-serratus_M_contig971:152344..1524021690964456.825932-UTR-F-serratus_M_contig971:152344..152402Fucus serratus maleUTRF-serratus_M_contig971 152345..152402 +
1622932752.6780822-UTR-F-serratus_M_contig971:152798..1529071622932752.6780822-UTR-F-serratus_M_contig971:152798..152907Fucus serratus maleUTRF-serratus_M_contig971 152799..152907 +
1690964456.8465037-UTR-F-serratus_M_contig971:152798..1529071690964456.8465037-UTR-F-serratus_M_contig971:152798..152907Fucus serratus maleUTRF-serratus_M_contig971 152799..152907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932752.6644022-CDS-F-serratus_M_contig971:152402..1527981622932752.6644022-CDS-F-serratus_M_contig971:152402..152798Fucus serratus maleCDSF-serratus_M_contig971 152403..152798 +
1690964456.8358862-CDS-F-serratus_M_contig971:152402..1527981690964456.8358862-CDS-F-serratus_M_contig971:152402..152798Fucus serratus maleCDSF-serratus_M_contig971 152403..152798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig971.21044.1

>prot_F-serratus_M_contig971.21044.1 ID=prot_F-serratus_M_contig971.21044.1|Name=mRNA_F-serratus_M_contig971.21044.1|organism=Fucus serratus male|type=polypeptide|length=132bp
MLMKSVGKHPSGEHPPTVPPNFLRGELSSSARGHLHRHRHGQLSLLAPMA
GARGYVQTHSQSLALELQIVCRSFHDFGEDFVGSTSKPETKYFSCELPVR
AIRGQYYGTYLHMLYIAKLLWYTFMVHTGTV*
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mRNA from alignment at F-serratus_M_contig971:152345..152907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig971.21044.1 ID=mRNA_F-serratus_M_contig971.21044.1|Name=mRNA_F-serratus_M_contig971.21044.1|organism=Fucus serratus male|type=mRNA|length=563bp|location=Sequence derived from alignment at F-serratus_M_contig971:152345..152907+ (Fucus serratus male)
GCACAAATTAATTCCAGATCCGCCTATTAATAGACTCTTCTTCAACAAAA
AGGTGCAAATGCTGATGAAATCAGTCGGGAAACACCCATCCGGGGAACAC
CCACCCACCGTCCCCCCCAACTTCCTGAGAGGCGAGTTGAGCTCCTCTGC
ACGCGGCCATCTTCACCGACACCGACATGGTCAACTATCCCTCTTGGCAC
CCATGGCAGGTGCTCGAGGTTACGTACAAACGCATTCACAAAGTTTAGCT
CTAGAACTACAAATCGTTTGCCGCTCGTTCCATGATTTTGGGGAAGACTT
CGTGGGAAGTACTTCAAAACCAGAAACAAAATATTTTTCGTGTGAACTGC
CGGTACGTGCCATAAGAGGGCAATACTACGGAACATACTTGCACATGCTT
TACATCGCCAAGTTGTTATGGTACACCTTTATGGTACATACTGGCACGGT
ATAGCACTGCCTTGCAATATCTCGGAAACCCTGCGACACCATCCACCTCT
CCCCGCCCCCCCCCAACCACTCGCCTGATAACCCTAACTGTCTCCCCTAG
CAGCTTGCCCTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig971:152345..152907+

>mRNA_F-serratus_M_contig971.21044.1 ID=mRNA_F-serratus_M_contig971.21044.1|Name=mRNA_F-serratus_M_contig971.21044.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig971:152345..152907+ (Fucus serratus male)
ATGCTGATGAAATCAGTCGGGAAACACCCATCCGGGGAACACCCACCCAC
CGTCCCCCCCAACTTCCTGAGAGGCGAGTTGAGCTCCTCTGCACGCGGCC
ATCTTCACCGACACCGACATGGTCAACTATCCCTCTTGGCACCCATGGCA
GGTGCTCGAGGTTACGTACAAACGCATTCACAAAGTTTAGCTCTAGAACT
ACAAATCGTTTGCCGCTCGTTCCATGATTTTGGGGAAGACTTCGTGGGAA
GTACTTCAAAACCAGAAACAAAATATTTTTCGTGTGAACTGCCGGTACGT
GCCATAAGAGGGCAATACTACGGAACATACTTGCACATGCTTTACATCGC
CAAGTTGTTATGGTACACCTTTATGGTACATACTGGCACGGTATAGATGC
TGATGAAATCAGTCGGGAAACACCCATCCGGGGAACACCCACCCACCGTC
CCCCCCAACTTCCTGAGAGGCGAGTTGAGCTCCTCTGCACGCGGCCATCT
TCACCGACACCGACATGGTCAACTATCCCTCTTGGCACCCATGGCAGGTG
CTCGAGGTTACGTACAAACGCATTCACAAAGTTTAGCTCTAGAACTACAA
ATCGTTTGCCGCTCGTTCCATGATTTTGGGGAAGACTTCGTGGGAAGTAC
TTCAAAACCAGAAACAAAATATTTTTCGTGTGAACTGCCGGTACGTGCCA
TAAGAGGGCAATACTACGGAACATACTTGCACATGCTTTACATCGCCAAG
TTGTTATGGTACACCTTTATGGTACATACTGGCACGGTATAG
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