mRNA_F-serratus_M_contig97.21025.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig97.21025.1
Unique NamemRNA_F-serratus_M_contig97.21025.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig97.21025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig97contigF-serratus_M_contig97:331246..331584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size193
Cds size147
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig97.21025.1prot_F-serratus_M_contig97.21025.1Fucus serratus malepolypeptideF-serratus_M_contig97 331291..331584 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932744.5618367-UTR-F-serratus_M_contig97:331245..3312901622932744.5618367-UTR-F-serratus_M_contig97:331245..331290Fucus serratus maleUTRF-serratus_M_contig97 331246..331290 -
1690964452.6216636-UTR-F-serratus_M_contig97:331245..3312901690964452.6216636-UTR-F-serratus_M_contig97:331245..331290Fucus serratus maleUTRF-serratus_M_contig97 331246..331290 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932744.5987117-CDS-F-serratus_M_contig97:331290..3313251622932744.5987117-CDS-F-serratus_M_contig97:331290..331325Fucus serratus maleCDSF-serratus_M_contig97 331291..331325 -
1690964452.6302805-CDS-F-serratus_M_contig97:331290..3313251690964452.6302805-CDS-F-serratus_M_contig97:331290..331325Fucus serratus maleCDSF-serratus_M_contig97 331291..331325 -
1622932744.6190848-CDS-F-serratus_M_contig97:331472..3315841622932744.6190848-CDS-F-serratus_M_contig97:331472..331584Fucus serratus maleCDSF-serratus_M_contig97 331473..331584 -
1690964452.6385958-CDS-F-serratus_M_contig97:331472..3315841690964452.6385958-CDS-F-serratus_M_contig97:331472..331584Fucus serratus maleCDSF-serratus_M_contig97 331473..331584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig97.21025.1

>prot_F-serratus_M_contig97.21025.1 ID=prot_F-serratus_M_contig97.21025.1|Name=mRNA_F-serratus_M_contig97.21025.1|organism=Fucus serratus male|type=polypeptide|length=49bp
PAFTLEWNADVQQIEEGKAPFEPIYRRRSRISSRTGKRTTTTVTRGRR*
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mRNA from alignment at F-serratus_M_contig97:331246..331584-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig97.21025.1 ID=mRNA_F-serratus_M_contig97.21025.1|Name=mRNA_F-serratus_M_contig97.21025.1|organism=Fucus serratus male|type=mRNA|length=339bp|location=Sequence derived from alignment at F-serratus_M_contig97:331246..331584- (Fucus serratus male)
CCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCAGATAGAAGAGGG
CAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTCGCATCTCGAGTC
GAACTGGAAAACGTGAGTGACCTAAGCACTTTCATTTGTTTTGTCGCGTC
CTGCTGGTCAACCTTTTGTGTCGCGCGTCCGGACGAAGTACGTGTATTGT
CAGCGGACACGTGTTTCACCTGTACTCCCTTTCGGCGGCGCTGTTATTTT
TTTTGCAAGGCACAACTACAACCGTAACGAGAGGGAGACGCTGAGCAGAG
TGCCGAACATACTTCGCCCGCTCCGTGAACCTGGAGTTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig97:331246..331584-

>mRNA_F-serratus_M_contig97.21025.1 ID=mRNA_F-serratus_M_contig97.21025.1|Name=mRNA_F-serratus_M_contig97.21025.1|organism=Fucus serratus male|type=CDS|length=294bp|location=Sequence derived from alignment at F-serratus_M_contig97:331246..331584- (Fucus serratus male)
CCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCAGATAGAAGAGGG
CAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTCGCATCTCGAGTC
GAACTGGAAAACCCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCA
GATAGAAGAGGGCAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTC
GCATCTCGAGTCGAACTGGAAAACGCACAACTACAACCGTAACGAGAGGG
AGACGCTGAGCACAACTACAACCGTAACGAGAGGGAGACGCTGA
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