mRNA_F-serratus_M_contig97.21022.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig97.21022.1
Unique NamemRNA_F-serratus_M_contig97.21022.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig97.21022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig97contigF-serratus_M_contig97:325547..325885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size193
Cds size147
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig97.21022.1prot_F-serratus_M_contig97.21022.1Fucus serratus malepolypeptideF-serratus_M_contig97 325592..325885 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932744.2630656-UTR-F-serratus_M_contig97:325546..3255911622932744.2630656-UTR-F-serratus_M_contig97:325546..325591Fucus serratus maleUTRF-serratus_M_contig97 325547..325591 -
1690964452.5483975-UTR-F-serratus_M_contig97:325546..3255911690964452.5483975-UTR-F-serratus_M_contig97:325546..325591Fucus serratus maleUTRF-serratus_M_contig97 325547..325591 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932744.279612-CDS-F-serratus_M_contig97:325591..3256261622932744.279612-CDS-F-serratus_M_contig97:325591..325626Fucus serratus maleCDSF-serratus_M_contig97 325592..325626 -
1690964452.5585284-CDS-F-serratus_M_contig97:325591..3256261690964452.5585284-CDS-F-serratus_M_contig97:325591..325626Fucus serratus maleCDSF-serratus_M_contig97 325592..325626 -
1622932744.2947388-CDS-F-serratus_M_contig97:325773..3258851622932744.2947388-CDS-F-serratus_M_contig97:325773..325885Fucus serratus maleCDSF-serratus_M_contig97 325774..325885 -
1690964452.5680761-CDS-F-serratus_M_contig97:325773..3258851690964452.5680761-CDS-F-serratus_M_contig97:325773..325885Fucus serratus maleCDSF-serratus_M_contig97 325774..325885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig97.21022.1

>prot_F-serratus_M_contig97.21022.1 ID=prot_F-serratus_M_contig97.21022.1|Name=mRNA_F-serratus_M_contig97.21022.1|organism=Fucus serratus male|type=polypeptide|length=49bp
PAFTLEWNADVQQIEEGKAPFEPIYRRRSRISSRTGKRTTTTVTRGRR*
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mRNA from alignment at F-serratus_M_contig97:325547..325885-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig97.21022.1 ID=mRNA_F-serratus_M_contig97.21022.1|Name=mRNA_F-serratus_M_contig97.21022.1|organism=Fucus serratus male|type=mRNA|length=339bp|location=Sequence derived from alignment at F-serratus_M_contig97:325547..325885- (Fucus serratus male)
CCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCAGATAGAAGAGGG
CAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTCGCATCTCGAGTC
GAACTGGAAAACGTGAGTGACCTAAGCACTTTCATTTGTTTTGTCGCGTC
CTGCTGGTCAACCTTTTGTGTCGCGCGTCCGGACGAAGTACGTGTATTGT
CAGCGGACACGTGTTTCACCTGTACTCCCTTTCGGCGGCGCTGTTATTTT
TTTTGCAAGGCACAACTACAACCGTAACGAGAGGGAGACGCTGAGCAGAG
TGCCGAACATACTTCGCCCGCTCCGTGAACCTGGAGTTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig97:325547..325885-

>mRNA_F-serratus_M_contig97.21022.1 ID=mRNA_F-serratus_M_contig97.21022.1|Name=mRNA_F-serratus_M_contig97.21022.1|organism=Fucus serratus male|type=CDS|length=294bp|location=Sequence derived from alignment at F-serratus_M_contig97:325547..325885- (Fucus serratus male)
CCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCAGATAGAAGAGGG
CAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTCGCATCTCGAGTC
GAACTGGAAAACCCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCA
GATAGAAGAGGGCAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTC
GCATCTCGAGTCGAACTGGAAAACGCACAACTACAACCGTAACGAGAGGG
AGACGCTGAGCACAACTACAACCGTAACGAGAGGGAGACGCTGA
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