mRNA_F-serratus_M_contig97.21017.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig97.21017.1
Unique NamemRNA_F-serratus_M_contig97.21017.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig97.21017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig97contigF-serratus_M_contig97:257501..264907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size358
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig97.21017.1prot_F-serratus_M_contig97.21017.1Fucus serratus malepolypeptideF-serratus_M_contig97 257501..264907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932744.170301-CDS-F-serratus_M_contig97:257500..2575691622932744.170301-CDS-F-serratus_M_contig97:257500..257569Fucus serratus maleCDSF-serratus_M_contig97 257501..257569 -
1690964452.5018437-CDS-F-serratus_M_contig97:257500..2575691690964452.5018437-CDS-F-serratus_M_contig97:257500..257569Fucus serratus maleCDSF-serratus_M_contig97 257501..257569 -
1622932744.1958258-CDS-F-serratus_M_contig97:263943..2640711622932744.1958258-CDS-F-serratus_M_contig97:263943..264071Fucus serratus maleCDSF-serratus_M_contig97 263944..264071 -
1690964452.5185645-CDS-F-serratus_M_contig97:263943..2640711690964452.5185645-CDS-F-serratus_M_contig97:263943..264071Fucus serratus maleCDSF-serratus_M_contig97 263944..264071 -
1622932744.2143993-CDS-F-serratus_M_contig97:264747..2649071622932744.2143993-CDS-F-serratus_M_contig97:264747..264907Fucus serratus maleCDSF-serratus_M_contig97 264748..264907 -
1690964452.5359118-CDS-F-serratus_M_contig97:264747..2649071690964452.5359118-CDS-F-serratus_M_contig97:264747..264907Fucus serratus maleCDSF-serratus_M_contig97 264748..264907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig97.21017.1

>prot_F-serratus_M_contig97.21017.1 ID=prot_F-serratus_M_contig97.21017.1|Name=mRNA_F-serratus_M_contig97.21017.1|organism=Fucus serratus male|type=polypeptide|length=119bp
HNSSATVFVLHVSTANRMKGLRGGLILTFVQPEVYGLAPSWTSPQSMIHR
PCRGSFNVPHRATRETSGRIGTSAKKSARTDAGDASDASAQGDLNKVILF
EEFSRFADKSAVAQEVIFE
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mRNA from alignment at F-serratus_M_contig97:257501..264907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig97.21017.1 ID=mRNA_F-serratus_M_contig97.21017.1|Name=mRNA_F-serratus_M_contig97.21017.1|organism=Fucus serratus male|type=mRNA|length=7407bp|location=Sequence derived from alignment at F-serratus_M_contig97:257501..264907- (Fucus serratus male)
CATAACTCTTCTGCTACCGTATTTGTACTGCACGTCTCCACCGCAAACAG
GATGAAGGGGCTACGAGGCGGCTTGATATTGACATTTGTACAGCCAGAGG
TGTATGGTTTAGCACCTTCTTGGACGTCGCCACAATCCATGATACACAGA
CCTTGTCGAGGTAAAATGTATTTCCTTCCCCAATGATCTCTCAGCGATGT
TCACATTGTCTTGGTTGTATGTACGTCCAACCAAACGGTTCAAGTCACAT
GTTTTTGCCTCTCTGTTTTCAAAGAAAAATCTGAACGCATCTAAACGTTC
TCAACTTCCACCCCAAAGAGGGAAAGGAACGTCAAAACGTTTAACGTTTA
CAGTAGGTGGGAACATTGGCTGTGAGGACAAAAACTCGTCAAGGGATTCA
AAGGGTTCAACATCCCAATGTTGTTAGTAGATTAGGGTAAACCACAGTAT
AATATCGGGGTGAAACCCACCGTTACATTGTTTGTAAACTTTTACATTAT
TATTAGTCTAATCGCTCCCCTGCATGCAGGGGAACCAAGAAAAACATACC
TGGTAATGGTGCACCCCGATATTGTATTATACTGTCGACCTTTTGCAACT
ATTAATAGCATTGCGGCACCCATTTGAACCTAATAAGGAGTTTATGTCCT
TGCTGCCATTGTTCCCACCTACCAGTAAACGTTTTAAAATTTTCCCTCCC
TTACTGGGTGGATGCTCAGAAGGTTTTGATGCGAACTGGATCTTGCACCA
TAAGGACCTTATGTTTGCTATTAATATTACACCATGTCATTTATGAGTAG
AGTGTTCGTACATCGGTGCTATCCTCTGTGTTACAGGTTCGTTTAATGTT
CCTCACCGGGCGACCCGAGAAACGTCGGGAAGAATTGGGACATCCGCGAA
AAAGTCGGCAAGAACCGACGCTGGAGACGCTTCCGACGCCAGTGCCCAAG
GCGACCTCAACAAGGTGTTGTATCCGTTTGAAGTGATGGGATGTTTGTTT
GCCCGACGTATCCCACTTGACGAACCAGTGGGGTATTGTTTTATAACGTA
TGATAATTAGTGTTTTGATTCATATCATGGCGTTGTTCAGGAACTGGAAC
CTGGAAATCATGAGCATCTCGTAAGCCGACAGATGTCTTATTATTAGTCA
GTAGTTAGACGGGCTAAACCATTGAACTACTCAGTCACGTGACTTGTCTA
TTAATAATGGTTTAGCCCGTCTAACTAACAAGATGGTCCAACGACGGCTG
TTGAGCATGACCAACCGTGGCTTTAAACTCATCGAGCTCGAAGTTCAATT
CCAATTGCTTGTCAAGGTTATAATTAGACGACTGAGCCACACGCCCGGTC
AGCCAAGATTTAATTATGGCCTTGGCAAAAAGCAAGACGTGACCCCCCGT
GTTATGGTTCTCTATCCTGAAGAAAAGATAGATCGAGTGATCGAGAGGTG
GAGAGATGGAGAGATGGAGTTGAATCTCGTCCGAGAGAGGCAACGCGATT
GCCTCATGATTGATGGGTCGGAGGAGAGATAAATATTATTATCAACCGAT
CAAATTGACCAACACGGACGTCGACGCTGACGTCAAGGGTGTTAACTTTG
GTGTGGGTCTAGGAGTTTTATGAAAAAACAAACCATTACCGCAGTTTACT
GCTACCTAGACTCGCAGTTCCACACGAAGAGTAAAAATGGAATCGAGTGT
GAAATTGCGCCTCGTGGAAGAGCTAGAACTGTGCGCTGGCCCCTGTTTTG
GTTAGCAGTAAGTGATCTCGAAAGCCTCGATGCACCAATGTAGAGAGTCG
GGATTTTTTTCAATATGCCCACTTCATACCAAAAGTGGGTGTGGGAAAGA
GAGGCGCACATTAATTTGTTCATAGTGACCTGCCAAGGCAACACTCGTTC
GAACTACCTTGAGGTTTACTGGCCCTGTGCCGGCGGACTCTTGGCAGTGA
ACGCCATCGGTACGCAATTTGAGTGACCCGATAAACTCGGGACTGACCCA
ATGGCGTATCGTGGTTTTAAATAAATAAATGGACGCCGCCGCGGAATTCG
GGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATAAG
CAGGCTGACGCGGGACGGGACTGCCGAACCCGTTTCGCGAGACCAAATTA
TCAGGCGCAAACGCGGACAGGGAGGTATTAATTCTCCCTGTTCAGCTGAC
CACTAGCAGGATTGGCAACCTTACCCGGTTGATCCATACTCTTGCTATAT
GTGTGGCCATACATAAATACATACGAAGTACATGTTTAGTCAGCACGTTC
ATGCAAGTATGGATCAACCGAGTATGGTTGCAAATGCTCCAAAACAAACC
ACATTACCGTAGTTCCCCGCTACCTAGACTCACAGTTCCACTCGAGGAGT
AAAAATCGAAATCGAGTGTGAAGTTGCGCCTCGTGAAAGAGCTCGAACGG
TGCGTTTGCCCCTATTTTGGTTGTTAAATAGTACCAGGTAGTAAGTGATC
TTAAAAGCCTCGATGTACCAATGTAGAGAGCCGGGAGGGATCTGTATGTG
TGCATGTTTTGTCAGCACTTTCATGTAAGTAGGGATCAACCGGGTATGGT
TGCTATAGTTGCTAGTTCTCCTCGTGGTCACCGTCGGTTTAACAGAATGC
TGCACACATTGACACCTCTGTTTTCATTCGAGCCTGAGAATTTAATCTCG
CCAGACGGGTCCGGCCATCCCGCCCTGGGCTTATTCTCCTCAGTAAGGTT
AACTGAATACCTGGTATGATGCTTAGTCACGGGCTTCTCTCCTTCCTCTC
GCTTTCCGCGACAACTTTTACATCTATTATACGAAGTATCTAGATAACGG
CGTCTATCGATACCGCCAACCGCCACCGGGTCAGTCACTTTCAATAGTTT
ATCGGGTCACGCAATTGCGTCCCGATGGCGTTCACCGCCGAGAGTCCACC
GGCACAGGGCCAGTGGTCCTCAATTTACCTTAAGTGACGGTCGCTGGCTA
TGCAGGTCTCATCATGGACCAATTAATGTGCGCCTCTCTTTTTCCCACAC
ACACTATTAGTGTAGTAGTGTAGTTGACATGTGCGATACATACAATATCG
GAGGCGATTACATCTTCCGTACCCGGGCGCTATTACAGTGTGTTTGATTC
TCCTCCATGTGTGCCATTGGCAGGTAGTTAGTTAGTTAGTTAGTTAGTTA
CTGGTAGGTAATACAGCAACGGCAAGAAAAGGGGTTCAGGCATCAGTCAC
CAGTCATCAGCCATCAGTCATCAGCCATCAGATAACCGGTGACGCGCAAG
AGGTAAGAGGTAAGAGGTCTTGGTAAAACGAAGCAAGGAATGACAAGTAG
GCTTTACGACATACCGGTAAGAAATGAAATCCAAACAGAGTTGCAACCGA
CAGCAATGCGTTTTAACTGTCGTATAACCGCAGAAGAATCCACAAATGTA
TATATATATATATAAAATATATATATATGTATACCACCTACCTGAACAGA
ACACGAGGAGACTCTTCAAACTTATGAAACTAAATCATTCGAACACATAC
AGCTGTACCTGGTAGTGGTTACCGAGCCCCCCGGTTTCGCTTGGTAATCT
TGGTGTGATGTTTGGACTACAGGGGCAGCCGAGCCCCGCGACAAACTTTT
GTGCAGGTTAAACTAAACACCTGAGTGACATAGTCAAGTCAGCCGTTAAA
ATGATGTTTCAACATTGACCCACACGCCCAGTCAGCGACTAACTGAGCGT
ATATCTCAGTGGTTTCACTATGATTTCGACAAAAAATAAATGTTAATAAT
AAACCGGGGGTCCGATAGCCCTCGATGTCAACCCGAAGATGCCACCCTTG
TCTTCGCTGTTATGTGATCCGAGTCGCTCAAGTTCTAGTCACATGGTTAT
ATACCGGTACTTTCAACATGCCCACTTCATACCAATAGTGGGTGTGGGAA
AGAGAGGCGTATATTAATTGGTCCATGGTAACTTGCTAAGGTAGCACTCG
TTCGGAACTACCTTGAGGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCA
GTGAACGCCATCGGTACGCAATTGCGTGACCCGATAAACTTGGGACTTAC
CCGATGGCGTATGGCGATTTAATATAAATATATGGACGCCGCCCGCTGTG
GAACTCGGGAGGAATCCTGTAAGTAAGCACCAGATTCAGCCTGAGTATGG
AGATGAGCAGACTGACGCGGGACGGGACTGCCGAAACCGTCTCGCGCGAC
CAGATTCTCAGGCACGGACGCGGACATTGGGACATTCATTTTCCCTGTTC
AGCTGACCACGAGCAGGATTGACAACCTTACCCGGTCGATCCATACTCTT
GCTATATGTTTGACCATATCTGTGGGCGGGAAGGCTCCTCCGAATGAGCG
GCGGGCGGTTGCCAAAGCGAATCATGTTCGGAAACCTTGAGGGCGCAGTG
CGTAGAGGACGAGGTGGGAAGGAGAAAGAATGGACCGACTGCGTACAGAG
CGACATCCGGGCGTTTGGCATAACGGGGGATTGGGAAACGATGGCGGTAA
AGGCTGAGGCTTGGGTTGAGGCGGTAACGGAGGGTGGGCGGAGGTTCATG
GCCGCATGGAGGCAAGAAGAGGAAGACGCGGCCAGACATCGCCAGGAGAA
GAGAGAGGCAACGAGACTGGGAAAGTTGCAATCGCACACGGAAGAGTAGA
GTTTTGCGAAGCGACACCCATTGGCCTAGCTGACGAGTCGTAGGAATCCT
TGCACGGATGCGAGACGGACCGAGACCACCTGCGTAACGCGGACTTGCGT
AGCGCCTAGACATGTGGATGCGTCGCGTTATTTTTTCATTTGATTTTGAT
TTTTTCTCCGAACGAGCAGCGCGCACGGGGGGGGGGGGGAGGGCGCTGCC
TGCCAGTCTTTTTTATTTTTATTTTTATCCCTGTTCAGCAGACCACGAGC
GGGATTGGCCACCGTATAAAGTAGTTTTCTTCGGGTTGGCAACCAATGCG
CTGAATGTGAGAAACAACAACAACAACAACAACAACATACATACATATAT
CATATCTCTCCTGTCTTGCCTTTCAACATGCCCACTTCATACCAATAGTG
GGTGTGGGAAAGAGAGGCGAATATTAATTGGTCCATGGTGACCTGCCAAG
GCAGAACTCGTTCGGAACTACCTTGAAGTTTACTGGCCCTGAACCGGCGG
ACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCAGATAAATT
CGGGACTGACCCGATGACGTATGGTGGTTTCATAAATGGACGCCGCCGCG
GAACTCGGGAGGAATCCCGTAGTAAGTACCAGATTCAGCCTGAGTATGGA
GATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCGTCTCGCGAGACC
AAATCATCAGGCACGCACGGAGACAGAGGAATATTCATTTTCCCTGTTCA
GCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTAATTCATACTCTGC
TATATGTGATGACCATGTATGCATACATACATGTGACCACACAATGTGTG
TTACTTGCACCGTCTCTCTCTTACAAGGATAGGCTCTACTGTTGTACTCT
ATTTTTTTCGCTTCCCGACGAATCACATTTTGTCGAAAAGAAAATCCCAA
CAGCCGGGACCGAACCCAGGTGTGCTCGATTAAATAGGAAGAAATGAGAC
AAACGTTCAGCCAGCGTGTGCCGATGATTGGGCGGTTGTCGTTGACTGGA
TGTGTCGCTGTGATCAATTTGTAACCTTGAGAAAAGCTGTCGTCGCACGG
ATCCAACGGATAGATAGATATATATCTAGATAGATAGGTAAAATATATGA
ACGAGGATTGCGAAGTGGGGATCCAACCCAGGTGTTGTTGTTTTTGTCCA
GTTTACAGGTCGCATGTCCAGTTACTGTATTTAACTCTGACATGTACATC
ATTATTAATAGTCGCTTCGGGCAAAGTCTTCTCACCTTGCCCTGATCGGT
AATCTGCTGTGCACGAACGATGCAATCCCGCATGTTTTAGAATCCCAGTG
CCGGTGATAGCCTCCTGAACATTATAAAGAGCCAAACAAACAAAAAACTA
CTAGCGTAGAAAATATAGTTACAAAAGGCGAGTTTTCTTCTACAAAACGG
TAGTATGTATGGTCACACATATAGCAAGAGTATGGATCAACCGGGTGAGA
TTGCTCATCCTGCTCGTGGTCAGCTGAACAGGAAAAAATAATATTTCCCT
GTCCGCGTTCGCGCCTGATAATTTGGTCCCGCGAGACGGGTTCGGCAGTC
CCGTCCCGCGTCAGCCTGCTCATGCATACTCAGGCTGAATCTGGTGCTTA
CTTACGGGATTTCTCCCGATTTCCGCGGCGGCGTCCGTTTATGAAGCCGC
CATACGCCATCGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGTAC
CGATGGCGTTCACTGCCGAGAGTCCGCCGGCACAGGACCAGTATACCTCG
AGGTAGTTCCGAACGAGTGCTGACTTGGCAGGTCACCTTAAGCCAATTAA
TATGCGCCTCTCTTTCCCACACCCACTATTGGTATGAAGTGGGCATGCTG
GAGGTACCGGCGGATATATAGTCTACCAAAGCGAGTACAGCTGCGATGGG
TAAAAACTACCTGAGACAATTTCAGTATTAGTTTTTTTCCTGTTCAGCTG
ACCACGAGGGGGATTGGCAACCTTACCCGATCTATCCATACTCTGCTATA
CATGTTGACCATACGTACTGCAACGTTGCCATCTCTCCCCGGTTCTCACC
TACCATTTTTATGTCGCATGCAAGTTTAGCACTTTTGCACCTCGTCAACA
AATGGTTGGATTTTACTTACAATAGTACTCATGTTCTCACACTTTCCGCC
ACGAAAGCCCCAATTAAAGACGTGATTTTGTCAAGAATTGAACTCACGAC
TCCGTGCTATTAATGTTATAGTGATGATGATCTGCGAGGTTACCACTAAT
CCACTCGGGCGACGAGTACTATTAATACCATTACCAATACACGTTAATTC
GAGCGACAACATAGACATAAGAAAAAGTCTTATATTGTCCAACTCGTGTG
CAGCGCTAGTCTCGATGTTTTGCCCGAGACGCTTCTAGGTTATAATCCTT
TAACCTCTCATGGAATTTCATGGACTTTTCCCATTGAAAACCAAGGCATC
TGTTGACTTTGTTTCAGCATAGGGAAGCCTAACCTATCTTGCAGTGCTTG
AGTTATATTCTACTACCAGTCGTTGCACCCAGCTAAACCTTTCGTGCAGT
GCTAAAGCTATTTTCCAACTGCCGATCGTTACACCCAGGTGATCCTGTTC
GAGGAGTTCTCCAGATTTGCCGACAAGTCAGCTGTGGCGCAAGAAGTAAT
TTTCGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig97:257501..264907-

>mRNA_F-serratus_M_contig97.21017.1 ID=mRNA_F-serratus_M_contig97.21017.1|Name=mRNA_F-serratus_M_contig97.21017.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig97:257501..264907- (Fucus serratus male)
CATAACTCTTCTGCTACCGTATTTGTACTGCACGTCTCCACCGCAAACAG
GATGAAGGGGCTACGAGGCGGCTTGATATTGACATTTGTACAGCCAGAGG
TGTATGGTTTAGCACCTTCTTGGACGTCGCCACAATCCATGATACACAGA
CCTTGTCGAGCATAACTCTTCTGCTACCGTATTTGTACTGCACGTCTCCA
CCGCAAACAGGATGAAGGGGCTACGAGGCGGCTTGATATTGACATTTGTA
CAGCCAGAGGTGTATGGTTTAGCACCTTCTTGGACGTCGCCACAATCCAT
GATACACAGACCTTGTCGAGGTTCGTTTAATGTTCCTCACCGGGCGACCC
GAGAAACGTCGGGAAGAATTGGGACATCCGCGAAAAAGTCGGCAAGAACC
GACGCTGGAGACGCTTCCGACGCCAGTGCCCAAGGCGACCTCAACAAGGT
TCGTTTAATGTTCCTCACCGGGCGACCCGAGAAACGTCGGGAAGAATTGG
GACATCCGCGAAAAAGTCGGCAAGAACCGACGCTGGAGACGCTTCCGACG
CCAGTGCCCAAGGCGACCTCAACAAGGTGATCCTGTTCGAGGAGTTCTCC
AGATTTGCCGACAAGTCAGCTGTGGCGCAAGAAGTAATTTTCGAAGTGAT
CCTGTTCGAGGAGTTCTCCAGATTTGCCGACAAGTCAGCTGTGGCGCAAG
AAGTAATTTTCGAA
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