mRNA_F-serratus_M_contig97.21012.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig97.21012.1 vs. uniprot
Match: UPI00143CE783 (lysine-specific histone demethylase 1A n=2 Tax=Cynipoidea TaxID=40307 RepID=UPI00143CE783) HSP 1 Score: 234 bits (598), Expect = 1.260e-62 Identity = 191/613 (31.16%), Postives = 288/613 (46.98%), Query Frame = 3
Query: 33 RVLVVGAGLAGLSAARELSHRGYHVTVLEARDRVGGRLCSKEIDGSSSSSVDLGAAFIHGVDQNPVAALAQELGLTLIPM-DDCKLSGSDGLPVAEGVDQRIQALWNRVLDECALRQQQELDDQDEAGERDSRGETTEESHGEGSSXXXXTDSDAAEEPTHAYESSPRMTSGAEHCATSTSHVGDGLG-ATRSDEGGVEANRDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDTTQGSFKAKNSTAGTGATTRSP------KSFGQVLE------------ETARPHLSKLSAAELELWGWHRGNLEISCGADLNELDHLHWNQDDVYDFDGEHVVIKEGYEALSSKVATTLDIRLNTEVKMIRLDDAQLNVEVVATRGGKT--TSLRAGYVIVTLPLGVLKSRA----VSFRPALSNAKLAAIRSMGMGTLNKVVLHFSSVFWDQ-ADFLGQVGE---DRRRWLLFMDMSRITNRPILVAMTGGPFAVFVERLSDAEVVRRAMAIVRTVYSR--APDPIASQVTRWKGDRYSRGSFSFIPVGCSAREYDVLAEPVTD----------WRGRPRVLFAGEATTRFHPSTVHGAWLTGLREATRL 1745
+V+V+GAG+AGL+AA+++ G V VLEARDRVGGR+ + SS DLGA + G+ NPV L++++ + L + C L SDG V + D+ ++ +NR+L E LD ++AA P A+ T +G L R E GV+ + SD+ Q A++ T ++ K + Q+ E E + P LS+ + ++ WH NLE + L+ L HW+QDD ++F G H+ ++ GY + ++ LDIRLNT +++R + + +R +T T+ +A V+VTLPLGVLK+ A VSF P L K AI+ +G G LNKVVL F +FWD A+ G VG R LF ++ + P+L+A+ G A +E +SD +V R +A+++ ++ P P S VTRW+ D ++RGS+SF+ VG S +YD+LA PV +PR+ FAGE T R +P+TVHGA+L+GLRE R+
Sbjct: 196 KVIVIGAGIAGLAAAQQMQQFGLEVIVLEARDRVGGRIATFR---KSSYIADLGAMVVTGLGGNPVTTLSKQINMELHKIRQKCPLYESDGQTVPKDKDEMVEREFNRLL-EATSYLSHHLD--------------------------FNYVNNAAGAP-------------AQPAPTRPVSLGQALEWVIRLQEQGVKQRQVTHLRQYLALQGRLISNQHRMIAIKERLVELDKQYKEMSDSKQ----ARDITQEFVLRSKLRDLHNVCKEWDQLAEQQKEIEAKLQELEASPPSDVYLSSKDRQILDWHFANLEFANATSLSNLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALSEGLDIRLNTAARVVRYTATGVEIWAAPSRSPQTNHTTYKADAVLVTLPLGVLKASAPPSAVSFNPPLPEWKTQAIQRLGFGNLNKVVLCFERIFWDPTANLFGHVGSTTASRGELFLFWNLYKA---PVLLALVAGEAACVMENVSDDVIVGRCIAVLKGIFGNQVVPQPRESVVTRWRADPWARGSYSFVAVGSSGSDYDLLAAPVLPSPPPNQXXXXXXPQPRLFFAGEHTIRNYPATVHGAFLSGLREGGRI 758
BLAST of mRNA_F-serratus_M_contig97.21012.1 vs. uniprot
Match: A0A6P8Z2B2_DROAB (possible lysine-specific histone demethylase 1 n=1 Tax=Drosophila albomicans TaxID=7291 RepID=A0A6P8Z2B2_DROAB) HSP 1 Score: 235 bits (599), Expect = 3.690e-62 Identity = 192/611 (31.42%), Postives = 285/611 (46.64%), Query Frame = 3
Query: 33 RVLVVGAGLAGLSAARELSHRGYHVTVLEARDRVGGRLCSKEIDGSSSSSVDLGAAFIHGVDQNPVAALAQELGLTLIPMDD-CKLSGSDGLPVAEGVDQRIQALWNRVLDECALRQQQELDDQDEAGERDSRGETTEESHGEGSSXXXXTDSDAAEEP--THAYESSPRMTSGAEHCATSTSHVGDGLGATRSDEGGVEANRDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDTTQGSFKAKNSTAGTGATTRSPKSFGQVLE------ETARPHLSKLSAAELELWGWHRGNLEISCGADLNELDHLHWNQDDVYDFDGEHVVIKEGYEALSSKVATTLDIRLNTEVKMIRLDDAQLNVEVVATRGGKTT---SLRAGYVIVTLPLGVLK-----------SRAVSFRPALSNAKLAAIRSMGMGTLNKVVLHFSSVFWD-QADFLGQVGE---DRRRWLLFMDMSRITNRPILVAMTGGPFAVFVERLSDAEVVRRAMAIVRTVYSRA--PDPIASQVTRWKGDRYSRGSFSFIPVGCSAREYDVLAEPVTDWRGR-----------PRVLFAGEATTRFHPSTVHGAWLTGLREATRL 1745
+V+V+GAG++GL+ ++L G V VLEARDRVGGR+ + +S DLGA + GV NP+ L++++G+ L+P+ C L G DG PV + D I+ +NR+L E A LD S G+ E A +E +H +E EH + + + +SD + R P S + +A+ GQ LE E +P LS+ + + WH NLE + L+ L HW+QDD ++F G H ++ GY + + +DIRLN+ VK I+ + VE+VA T + +A + TL LGVLK + V F P L + K AIR +G G LNKVVL F +FWD A+ G VG R LF +S + P+L+A+ G A VE ++D +V R M++++ +Y P P + VTRW+ D+++RGS+S++ VG S +YD+LA PV + + PR+ FAGE T R +P+TVHGA+L+GLREA R+
Sbjct: 282 KVIVIGAGISGLAVGQQLQQFGMEVVVLEARDRVGGRIATFR---KNSYIADLGAMVVTGVYGNPMTILSKQIGMDLVPIQQTCPLYGPDGKPVPKEKDDVIEREFNRLL-ESASYLSHRLDFNYAGNNPVSLGDALE--------WIINMQDKAVQEKRASHMHEIIAAQNKIIEHRKRLKAII-QSIAKLKSDYQALVKQRLP-----------KSGQNESSYAQQEYNLRINQIKLEDSQKVEDELRAQ----------------GQKLELQLQEIEQNQPSQVYLSSRDRLILDWHFANLEFANATRLDNLSLKHWDQDDDFEFIGHHTTVRNGYSCVPVALTENIDIRLNSAVKEIKYSNK--GVEIVAENLKTCTPEVTYKADLAVCTLTLGVLKVAISNEESQPHANTVKFDPPLPDWKQQAIRRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSIS---STPVLLALVAGMAANIVESVTDDIIVGRCMSVLKNIYGNTSVPQPKETVVTRWRSDQWARGSYSYVSVGSSGSDYDLLAAPVIPPKSQEPHSSKEPEELPRLFFAGEHTIRNYPATVHGAYLSGLREAGRI 847
BLAST of mRNA_F-serratus_M_contig97.21012.1 vs. uniprot
Match: A0A6P7FL69_DIAVI (Probable lysine-specific histone demethylase 1 n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FL69_DIAVI) HSP 1 Score: 233 bits (593), Expect = 3.790e-62 Identity = 186/600 (31.00%), Postives = 292/600 (48.67%), Query Frame = 3
Query: 33 RVLVVGAGLAGLSAARELSHRGYHVTVLEARDRVGGRLCSKEIDGSSSSSVDLGAAFIHGVDQNPVAALAQELGLTLIPM-DDCKLSGSDGLPVAEGVDQRIQALWNRVLDECALRQQQELDDQDEAGERDSRGETTEESHGEGSSXXXXTDSDAAEEPTHAYESSPRMTSGAEHCATSTSHVGDGLGA--TRSDEGGVEANRDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDTTQGSFKAKNSTAGTGATTRSPKSFGQVLEE--TARPHLSKLSAAELELWGWHRGNLEISCGADLNELDHLHWNQDDVYDFDGEHVVIKEGYEALSSKVATTLDIRLNTEVKMIRLDDAQLNVEVVATRGGKTTSL-RAGYVIVTLPLGVLKSRAV---------SFRPALSNAKLAAIRSMGMGTLNKVVLHFSSVFWD-QADFLGQVGE---DRRRWLLFMDMSRITNRPILVAMTGGPFAVFVERLSDAEVVRRAMAIVRTVYSRA--PDPIASQVTRWKGDRYSRGSFSFIPVGCSAREYDVLAEPVTD--------WRGRPRVLFAGEATTRFHPSTVHGAWLTGLREATRL 1745
+V+V+GAG+AGL+AA++L G V VLE+RDRVGGR+ + + D+GA + G+ NP+ L++++ + L + C L S+G+ V + D+ ++ +NR+L+ + Q LD + S G+ E + + E+ +S + + + +V + + T+ DE V R+ D G K+ K LEE +++P LS+ + ++ WH NLE + L+ L HW+QDD ++F G H+ ++ GY + +A LDI+LN VK + + + V V R TT+ A V+ TLPLGVLK AV F P L + K +AI+ +G G LNKVVL F +FW+ QA+ G VG R LF ++ + P+L+A+ G A +E ++D +V R +A++R ++ ++ P P + VTRW+ D +SRGS+SF+ VG S +YD+LA PV G RV FAGE T R +P+TVHGA+L+GLREA+R+
Sbjct: 192 KVIVIGAGIAGLAAAQQLQQFGLEVIVLESRDRVGGRIATFR---KGNYIADIGAMVVTGLGGNPITTLSKQIDMELHRIRQKCPLYQSNGVTVDKDKDEMVEREFNRLLEATSYLSHQ-LDFNYAGNKPVSLGQALE-------WVIKLQEKNVKEKQIQHLKSVIALQEKLKGNQQTMMNVKEKMKEIKTKVDEMAVIEKRNTDEQFAYA---------------------------------SGIKDLKDLGTQWDQLKEQAKEIETKLEELDSSKPSDVYLSSKDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGNHLTVRNGYSCVPVALAEGLDIKLNAAVKKVEYNSRGVEVTVYNPRNPSTTNTYHAEAVLCTLPLGVLKLSAVPSSTQLNTVQFSPPLPDWKTSAIQRLGFGNLNKVVLCFERIFWNPQANLFGHVGSTTASRGELFLFWNLYKA---PVLLALVAGEAAAIMENVTDDVIVGRCIAVLRGIFGQSGVPQPKETVVTRWRADPWSRGSYSFVAVGSSGSDYDLLASPVIPPNDQGVSVTSGPARVFFAGEHTIRNYPATVHGAFLSGLREASRI 744
BLAST of mRNA_F-serratus_M_contig97.21012.1 vs. uniprot
Match: A0A023F516_TRIIF (Probable lysine-specific histone demethylase 1 n=5 Tax=Triatominae TaxID=70999 RepID=A0A023F516_TRIIF) HSP 1 Score: 233 bits (593), Expect = 5.090e-62 Identity = 190/602 (31.56%), Postives = 285/602 (47.34%), Query Frame = 3
Query: 27 ESRVLVVGAGLAGLSAARELSHRGYHVTVLEARDRVGGRLCSKEIDGSSSSSVDLGAAFIHGVDQNPVAALAQELGLTLIPM-DDCKLSGSDGLPVAEGVDQRIQALWNRVLDECALRQQQELDDQDEAGERDSRGETTEESHGEGSSXXXXTDSDAAEEPTHAYESSPRMTSGAEHCATSTSHVGDGLGATRSDEGGVEANRDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDTTQGSFKAKNSTAGTGATTRSPKSFGQVLE-ETARPHLSKLSAAELELWGWHRGNLEISCGADLNELDHLHWNQDDVYDFDGEHVVIKEGYEALSSKVATTLDIRLNTEVKMIRLDDAQLNVEVVATRG---GKTTSLRAGYVIVTLPLGVLKSRA----------VSFRPALSNAKLAAIRSMGMGTLNKVVLHFSSVFWDQADFL-GQVGE---DRRRWLLFMDMSRITNRPILVAMTGGPFAVFVERLSDAEVVRRAMAIVRTVY--SRAPDPIASQVTRWKGDRYSRGSFSFIPVGCSAREYDVLAEPVTDWRGRP--------RVLFAGEATTRFHPSTVHGAWLTGLREATRL 1745
+ RV+V+GAG+AGL+AA+++ G V VLEAR+RVGGR+ + + DLGA + G+ NPV L++++ + L + C L S G V + D+ ++ +NR+L+ + LD G+ S G+ A E E + + A H A ++ D L ++ +E + D Q + + G++ + E + P LS + ++ WH NLE + LN L HW+QDD ++F G H+ ++ GY + ++ L+I+LNT VK IR D+ VEVVA +G G + V+ TLPLGVLK A V F P L + K++AI+ +G G LNKVVL F FWD A L G VG R LF + I P+L+A+ G A +E +SD +V R +A+++ ++ + P P + VTRW+ D++SRGS+SF+ VG S +YDVLA PV P R+ FAGE T R +P+TVHGA+L+GLRE R+
Sbjct: 196 QGRVIVIGAGIAGLAAAQQMQQFGMDVVVLEARERVGGRIATFR---KGNFIADLGAMVVTGLGGNPVNVLSKQINMELHKIRQKCPLYDSSGKTVPKEKDEMVEREFNRLLEATSYLSHM-LDFNYSGGKPVSLGQ-------------------ALEWVIKLQEKNVKEKQIAHHKAVV--NLQDRLKTNQNQM--IELKENIAELSRQYKSMQENKAPRNIASEFSVRYKLRDLHNACKDWDQ-------------LVEQQNEIEGKLRDLENSPPSDVYLSCQDRQILDWHFANLEFANATPLNNLSLKHWDQDDDFEFTGSHLTVRNGYSCVPLALSDGLNIKLNTAVKQIRYDNK--GVEVVAAKGRNNGSLVTYTGDVVLCTLPLGVLKQSASSSNQPVPNMVQFMPPLPDWKISAIQRLGFGNLNKVVLCFDKQFWDPASNLFGHVGSTTASRGELFLFWN---IYKAPVLLALVAGEAAAIMENVSDDVIVGRCLAVLKGIFGNNNVPQPKETVVTRWRVDQWSRGSYSFVAVGASGSDYDVLAAPVHPQTPSPQDNPPVLPRLFFAGEHTIRNYPATVHGAFLSGLREGGRI 752
BLAST of mRNA_F-serratus_M_contig97.21012.1 vs. uniprot
Match: A0A1W4W6H8_DROFC (Probable lysine-specific histone demethylase 1 n=7 Tax=melanogaster group TaxID=32346 RepID=A0A1W4W6H8_DROFC) HSP 1 Score: 234 bits (596), Expect = 7.400e-62 Identity = 195/610 (31.97%), Postives = 284/610 (46.56%), Query Frame = 3
Query: 33 RVLVVGAGLAGLSAARELSHRGYHVTVLEARDRVGGRLCSKEIDGSSSSSVDLGAAFIHGVDQNPVAALAQELGLTLIPMDD-CKLSGSDGLPVAEGVDQRIQALWNRVLDECALRQQQELDDQDEAGERDSRGETTEESHGEGSSXXXXTDSDAAEEPTHAYESSPRMTSGAEHCATSTSHVGDGLGATRSDEGGVEANRDPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDTTQG--SFKAKNSTAGTGATTRSPKSFGQVLEETA------------RPHLSKLSAAELELWGWHRGNLEISCGADLNELDHLHWNQDDVYDFDGEHVVIKEGYEALSSKVATTLDIRLNTEVKMIRLDDAQLNVEVVATR---GGKTTSLRAGYVIVTLPLGVLK----------SRAVSFRPALSNAKLAAIRSMGMGTLNKVVLHFSSVFWD-QADFLGQVGE---DRRRWLLFMDMSRITNRPILVAMTGGPFAVFVERLSDAEVVRRAMAIVRTVYSRA--PDPIASQVTRWKGDRYSRGSFSFIPVGCSAREYDVLAEPVT-----DWRGRPRVLFAGEATTRFHPSTVHGAWLTGLREATRL 1745
+V+V+GAG++GL+ A++L G V VLEARDRVGGR+ + +S DLGA + GV NP+ L++++G+ L+P+ C L G DG PV + D I+ +NR+L E A LD S G+ E ++ H E T EH + + + +S+ + R P SD G F +N+ K F ++ EE RP LS+ + + WH NLE + LN L HW+QDD ++F G H ++ GY + + LDIR+N+ VK I+ VEVVA + +A + TL LGVLK S V F P L + K AIR +G G LNKVVL F +FWD A+ G VG R LF +S + P+L+A+ G A VE ++D ++ R M++++ ++ P P + VTRW+ D ++RGS+S++ VG S +YD+LA PV + G PR+ FAGE T R +P+TVHGA+L+GLREA R+
Sbjct: 260 KVIVIGAGISGLAVAQQLQQFGMDVIVLEARDRVGGRIATFR---KNSYIADLGAMVVTGVYGNPMTILSKQIGMDLVPIQQTCPLYGPDGKPVPKEKDDVIEREFNRLL-ESASYLSHRLDFNYAGNCPVSLGDALEWIISMQEMQVMH------KKAQHMQEIIAAQTKIIEH-RRRLKTLKESIATLKSERQTMVKQRIP--------------------------------KGTESDVNYGRQEFNIRNTQI---KLEEQAKLFSELHEEDKQMEAKLRELEQNRPSDVYLSSRDRLILDWHFANLEFANATRLNNLSLKHWDQDDDFEFIGHHTTVRNGYSCVPVALTENLDIRVNSAVKEIKYGTN--GVEVVAENLKTSNSQMTYKADLAVCTLTLGVLKVAVAHEESQQSNTVKFDPPLPDWKQQAIRRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTSSRGEMFLFWSIS---SSPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSYSYVSVGSSGSDYDLLAAPVIPPSSKEAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREAGRI 818 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig97.21012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig97.21012.1 >prot_F-serratus_M_contig97.21012.1 ID=prot_F-serratus_M_contig97.21012.1|Name=mRNA_F-serratus_M_contig97.21012.1|organism=Fucus serratus male|type=polypeptide|length=727bp MESRVLVVGAGLAGLSAARELSHRGYHVTVLEARDRVGGRLCSKEIDGSSback to top mRNA from alignment at F-serratus_M_contig97:232339..235694+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig97.21012.1 ID=mRNA_F-serratus_M_contig97.21012.1|Name=mRNA_F-serratus_M_contig97.21012.1|organism=Fucus serratus male|type=mRNA|length=3356bp|location=Sequence derived from alignment at F-serratus_M_contig97:232339..235694+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig97:232339..235694+ >mRNA_F-serratus_M_contig97.21012.1 ID=mRNA_F-serratus_M_contig97.21012.1|Name=mRNA_F-serratus_M_contig97.21012.1|organism=Fucus serratus male|type=CDS|length=4362bp|location=Sequence derived from alignment at F-serratus_M_contig97:232339..235694+ (Fucus serratus male)back to top |