mRNA_F-serratus_M_contig97.21011.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig97.21011.1
Unique NamemRNA_F-serratus_M_contig97.21011.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig97.21011.1 vs. uniprot
Match: D7G6B3_ECTSI (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6B3_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 1.690e-115
Identity = 172/234 (73.50%), Postives = 193/234 (82.48%), Query Frame = 3 
Query:  366 MVFVSRPLVMFIASRAQG---RFLPFGIARRCKAISSTPDGGKSRHEYEVLGRDLVYSGWRKIVKKNVRFDGNKSFVFDVVHQENPSVAVFVWHTASKTLTLIKEFSPGREMVAHGVVAGVYEKNKHDSPLQAAKFELEEEAHLSGGTWHSLCEDAETTINADKYSSNEFFCWLVVDPYVTPTPRALDDEESIEIERGITMQRAMSMLDRGELSMVSSFVVLAGVRKLRQLGLV 1058
            MV VSRPL+ F A+RAQG   R   FG AR C   SS    GK +H+++VL RDL YSGWRKIVKK VR +  K +VFDVVHQE PSVAVFVWHT + TLTLIKEF+PGRE VAHGVVAG+YEKNKHDSPLQAAK+ELEEEAHL GGTWH+LCED ETTINADKYSSNEF+CWLVVDPYVTPTP+ +DDEE IEI RG++MQ  M M+ RGELS+VSSFVVL G RKLRQLGL+
Sbjct:    1 MVSVSRPLLAFAAARAQGTAGRLFSFGTARHCAGFSSPVGEGKPQHDFKVLNRDLAYSGWRKIVKKTVRVEDEKDYVFDVVHQEEPSVAVFVWHTQTNTLTLIKEFAPGREEVAHGVVAGMYEKNKHDSPLQAAKYELEEEAHLLGGTWHTLCEDDETTINADKYSSNEFYCWLVVDPYVTPTPKPMDDEEFIEIRRGVSMQECMRMVGRGELSIVSSFVVLMGARKLRQLGLL 234
[Close]
BLAST of mRNA_F-serratus_M_contig97.21011.1 vs. uniprot
Match: A0A7S3Y3W4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3W4_HETAK)

HSP 1 Score: 181 bits (458), Expect = 9.950e-49
Identity = 86/189 (45.50%), Postives = 124/189 (65.61%), Query Frame = 3 
Query:  498 YEVLGRDLVYSGWRKIVKKNVRFDGNKSFVFDVVHQE-NPSVAVFVWHTASKTLTLIKEFSPGREMVAHGVVAGVYEKNKHDSPLQAAKFELEEEAHLSGGTWHSLCEDAETTINADKYSSNEFFCWLVVDPYVTPTPRALDDEESIEIERGITMQRAMSMLDRGELSMVSSFVVLAGVRKLRQLGLVS 1061
            +++L   + YS WRKI++++V         FD+VH +   S+ VF W T ++T TL++EF PG   + HGV AG+YE NKH SPL+AA+ ELEEEAHL+GGTW ++ ++ +T I  DKY++N   C+LV+DP   P PRALD EE IEI  G T    M ++  G ++++SS+  L    KLR LGL++
Sbjct:   86 FKILAERVAYSRWRKIIERDVELPNGTQCSFDIVHNDLEGSIVVFAWDTRAQTATLVREFQPGPMRLLHGVAAGMYEPNKHGSPLEAARMELEEEAHLTGGTWINMMDEGQT-ITVDKYNTNRVHCFLVLDPTPAPNPRALDAEEHIEIRPGATRGDIMGLITSGNMNIMSSYTCLLAFEKLRTLGLLN 273
[Close]
BLAST of mRNA_F-serratus_M_contig97.21011.1 vs. uniprot
Match: A0A6U2S3A3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2S3A3_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.850e-37
Identity = 73/190 (38.42%), Postives = 114/190 (60.00%), Query Frame = 3 
Query:  489 RHEYEVLGRDLVYSGWRKIVKKNVRFDGNKSFVFDVVHQENP-SVAVFVWHTASKTLTLIKEFSPGREMVAHGVVAGVYEKNKHD-SPLQAAKFELEEEAHLSGGTWHSLCEDAETTINADKYSSNEFFCWLVVDPYVTPTPRALDDEESIEIERGITMQRAMSMLDRGELSMVSSFVVLAGVRKLRQLG 1052
            + ++ ++  ++VYS WRKI+++ V+F    +  FD+V Q+   +V +F W + +KT TL++E++PG     HGV AG+ E++KH   P  AA+ ELEEE HL GG W+ L  D   T+  DKY   E   +LV+DP     PR LD EE IEI  G+++     M+  G +++V  +  +  + KLR+LG
Sbjct:   36 QQQHRIISDEVVYSRWRKIIRRVVQFPAGNTVDFDIVDQKGTGAVTIFAWCSKTKTATLVREYNPGCHKSLHGVAAGLIEEDKHQCDPEIAARHELEEECHLQGGRWYRLTADG-ATVPMDKYVVTEIAAYLVIDPETVSNPRPLDAEEDIEIISGVSVPEIFDMIRSGGMNLVGGWACMLAIEKLRELG 224
[Close]
BLAST of mRNA_F-serratus_M_contig97.21011.1 vs. uniprot
Match: A0A0G4H3V0_VITBC (Nudix hydrolase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H3V0_VITBC)

HSP 1 Score: 145 bits (366), Expect = 2.890e-36
Identity = 69/188 (36.70%), Postives = 106/188 (56.38%), Query Frame = 3 
Query:  489 RHEYEVLGRDLVYSGWRKIVKKNVRFDGNKSFVFDVVHQENPSVAVFVWHTASKTLTLIKEFSPGREMVAHGVVAGVYEKNKHDSPLQAAKFELEEEAHLSGGTWHSLCEDAETTINADKYSSNEFFCWLVVDPYVTPTPRALDDEESIEIERGITMQRAMSMLDRGELSMVSSFVVLAGVRKLRQLG 1052
            R  ++V+G  +VY GW+ ++ + +     K+  +D+ H + P+V V  W T  KT    +E+ PG      G VAG+YE+ KH+SPL AAK ELEEEAHL GG W +L  +    ++ +KYS   F+ +L +DP  T  PR LDD E I + R +  +  +     G  ++ +S   L  + KLR++G
Sbjct:   34 REPFKVIGEQMVYQGWKNVMHRTIELPNGKTTRYDINHSDCPAVFVVPWDTQKKTTIFAEEYYPGPNQWKKGFVAGLYERKKHESPLHAAKLELEEEAHLVGGKWINLINE-RGVMDYEKYSDQIFYAFLCLDPVHTDDPRPLDDSEVIYLHRDVPAKAVLEGALHGHFTVTTSLAALLAIEKLREIG 220
[Close]
BLAST of mRNA_F-serratus_M_contig97.21011.1 vs. uniprot
Match: A0A7S1ZSI2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZSI2_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.970e-36
Identity = 76/196 (38.78%), Postives = 114/196 (58.16%), Query Frame = 3 
Query:  495 EYEVLGRDLVYSGWRKIVKKNVRFDGNKSFVFDVVHQENP-SVAVFVWHTASKTLTLIKEFSPGREMVAHGVVAGVYE---KNKHDSPLQAAKFELEEEAHLSGGTWHSLCEDAE------TTINADKYSSNEFFCWLVVDPYVTPTPRALDDEESIEIERGITMQRAMSMLDRGELSMVSSFVVLAGVRKLRQLG 1052
            EYE+L  ++V+  WR I+ + VR        +DVV Q+   +V +FVW++ +KT TL++E++PG   + +GV AG+ E   K+ H  P QAA  ELEEE HLSGGTWH L   +       T++  DKY+      +LV+D      P+  DDEE IEI R +T+   + ++  GE+++V  +  L  + KLR LG
Sbjct:   97 EYELLKEEVVFQRWRSILSRVVRMPNGNVVDYDVVDQKGVGAVVIFVWNSQTKTATLVREYNPGCHRILYGVAAGLIEDDAKHSHGDPKQAAIMELEEECHLSGGTWHCLTTPSSSSSSLPTSVPMDKYAVTNITPYLVIDASHVTNPKPCDDEEDIEIVRNVTIDEVLRLIRSGEMNLVGGWACLLAIEKLRDLG 292
[Close]
BLAST of mRNA_F-serratus_M_contig97.21011.1 vs. uniprot
Match: A0A1E7ER69_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER69_9STRA)

HSP 1 Score: 142 bits (357), Expect = 5.680e-35
Identity = 76/194 (39.18%), Postives = 115/194 (59.28%), Query Frame = 3 
Query:  483 KSRHEYEVLGRDLVYSGWRKIVKKNVRFDGNKSFVFDVVHQE--NPSVAVFVWHTASKTLTLIKEFSPGREMVAHGVVAGVYEK--NKHDSPLQAAKFELEEEAHLSGGTWHSLCEDAETTINADKYSSNEFFCWLVVDPYVTPTPRALDDEESIEIERGITMQRAMSMLDRGELSMVSSFVVLAGVRKLRQLG 1052
            ++++ +E++    VYSGWR IV++ VR   NK   FD+V  +  + +V +F W T SKT TLI+E+ P    +  G+ AG+ E+  + H++ L AA+ ELEEE HL  G W  L          DKYS+    C+LV+DP     P+ALD+EE IEI  G+T+   +  ++ GE+++V  F  L  + KLR+LG
Sbjct:   43 ENKNNFEIIDEKTVYSGWRTIVQRKVRMRNNKVVDFDLVGVKTGDSAVLIFAWDTKSKTATLIREYMPASNRILWGLAAGLVEEKHDNHNTEL-AARHELEEECHLKNGKWIPLLHQPTAM---DKYSTTTIQCYLVLDPEKEDNPKALDEEEDIEIIPGVTIPEILRWVNNGEMNLVGGFGCLLAIEKLRELG 232
[Close]
BLAST of mRNA_F-serratus_M_contig97.21011.1 vs. uniprot
Match: A0A482S980_9ARCH (NUDIX hydrolase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S980_9ARCH)

HSP 1 Score: 134 bits (337), Expect = 5.020e-33
Identity = 68/156 (43.59%), Postives = 100/156 (64.10%), Query Frame = 3 
Query:  588 FDVVHQENPSVAVFVWHTASKTLTLIKEFSPGREMVAHGVVAGVYEKNKHDSPLQAAKFELEEEAHLSGGTWHSLCEDAETTINADKYSSNEFFCWLVVDPYVTPTPRALDDEESIEIERGITMQRAMSMLDRGELSMVSSFVVLAGVRKLRQLGL 1055
            +D++ Q++ SV VFVW TAS T TL+KE+ PG   V  G VAG+ E  KH S LQAA+ ELEEEAHL    W+SL  +    +  DKYS+N F  +L +D     + + LDDEE I I R +T    M ++  G++++VS++ ++ G++KL+ LG+
Sbjct:   10 YDIITQKHLSVVVFVWDTASATTTLVKEYHPGPNKVMLGAVAGMCENEKHTSILQAAQHELEEEAHLRTDHWYSLLNEG-AIMPFDKYSNNRFIPYLALDCEPVKSAKPLDDEEYITIHRNVTYNEMMELMASGQINVVSTYTIMLGLKKLKDLGI 164
[Close]
BLAST of mRNA_F-serratus_M_contig97.21011.1 vs. uniprot
Match: A0A4D9D3K8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3K8_9STRA)

HSP 1 Score: 138 bits (347), Expect = 5.970e-32
Identity = 79/203 (38.92%), Postives = 118/203 (58.13%), Query Frame = 3 
Query:  462 SSTPDGGKSRHEYEVLGRDLVYSG-WRKIVKKNVRFDGNKSFVFDVVHQENPSVAVFVWHTASKTLTLIKEFSPGREMVAHGVVAGVYEKNKHDSPLQAAKFELEEEAHLSGGTWHSLCE-DAETTINADKYSSNEFFCWLVVDPY--VTPTPRALDDEESIEIERGITMQRAMSMLDRGELSMVSSFVVLAGVRKLRQLGLV 1058
            S TP  G +  ++ +L    +Y G WR +++++V++   +   FDV+ Q   SV VF+W++ S T TLI+E++PG   V    VAG  E  KH+ P  AA  ELEEEAHL GGTW +L E + E  + ADKYS+  F  +LVVDP   V    R  DDEE + + R +T+     ++ RG++++  +   L  + KLR L L+
Sbjct:   69 SITP--GLAPQDFTLLKEKDLYRGKWRSLLQRDVQYPDGRQVTFDVMDQPGSSVLVFIWNSTSHTTTLIEEYAPGSLQVIFTPVAGGCEDEKHEDPQHAAVLELEEEAHLKGGTWFNLLEGEGEEGVAADKYSTCPFHFYLVVDPVREVEKNARKRDDEELLVVHREVTLVEVRRLIRRGKMTVPGACASLLAMEKLRALKLL 269
[Close]
BLAST of mRNA_F-serratus_M_contig97.21011.1 vs. uniprot
Match: A0A5J4YLI7_PORPP (Nudix hydrolase domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YLI7_PORPP)

HSP 1 Score: 110 bits (274), Expect = 1.910e-23
Identity = 70/223 (31.39%), Postives = 114/223 (51.12%), Query Frame = 3 
Query:  399 IASRAQGRFLPFGIARRCKAISSTPDGGKSRHEYEVLGRDLVYSGWRKIVKKNVRFDGNKSFVFDVVHQENP---SVAVFVWHTASKTLTLIKEFSPGREMVAHGVVAGVYEKNKHDSPLQAAKFELEEEAHLSGGTWHSLCEDAETTINADKYSSNEFFCWLVVDPYVTPTPRALDDEESIEIERGITMQRAMSMLDRGELSMVSSFVVLAGVRKLRQLGLV 1058
            +  RAQ    P   +  C A S+    G  +  + +    + Y  ++ I ++ V +     + FDV         SV VF +++A+KT  LI+E+ PG   + +G VAG ++   H     AA+ EL EEAHL+GGT   L   A   +  DKYS + F  +L +D ++   PR  D+EE I+I R + +  A+ M+ RGE ++ S+ + L    +LR+  L+
Sbjct:   35 VCDRAQLTLNPLRASWMCSAASA----GSEQDGFTLKSEAVRYERYKTIYERVVTYPDGAEYSFDVEGSPRANFSSVLVFPFNSAAKTTVLIREYHPGLHALRYGFVAGFFDAKVHADEEAAARAELSEEAHLTGGTMQLLNSGAP--VPRDKYSLDYFHMFLALDAHLDLRPRERDEEERIDIVRDVPVTEAIDMVFRGEFNLSSATLCLMAAERLRKDSLL 251
[Close]
BLAST of mRNA_F-serratus_M_contig97.21011.1 vs. uniprot
Match: A0A7S2ZFG6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZFG6_9RHOD)

HSP 1 Score: 106 bits (265), Expect = 2.130e-22
Identity = 63/193 (32.64%), Postives = 105/193 (54.40%), Query Frame = 3 
Query:  495 EYEVLGRDLVYSGWRKIVKKNVRFDGNKSFVFDVV---HQENPSVAVFVWHTASKTLTLIKEFSPGREMVAHGVVAGVYEKNKHDSPLQAAKFELEEEAHLSGGTWHSLCEDAETTINADKYSSNEFFCWLVVDPYVTPTPRALDDEESIEIERGITMQRAMSMLDRGELSMVSSFVVLAGVRKLRQLGLVSP 1064
            ++ +L   + +  ++ + ++ +R+   K   FDV      +  SV VF + T +KT+TL++E+ PG   V  G  AG ++  KH S   AA+ EL EEA L+GG++  + E     ++ DKYS N F  +LV++P     P   D+EE I+I +G+T+ R   +L +G +++ S F    G R L  L   +P
Sbjct:   39 KFSILDEKVSFQRYQTVYERLIRYPNGKRVSFDVFGNPRSDFKSVFVFPYDTRTKTVTLLREYIPGINEVMWGFPAGGFDPKKHKSLEDAARSELSEEAFLTGGSYFPMLESGG--VSQDKYSKNMFHMFLVLNPVEDENPLPRDEEEYIQIVKGVTLPRLQKILAQGGMNLPSGF---CGYRALDALSNPTP 226
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig97.21011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G6B3_ECTSI1.690e-11573.50Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A7S3Y3W4_HETAK9.950e-4945.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U2S3A3_9STRA1.850e-3738.42Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0G4H3V0_VITBC2.890e-3636.70Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S1ZSI2_9STRA2.970e-3638.78Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1E7ER69_9STRA5.680e-3539.18Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A482S980_9ARCH5.020e-3343.59NUDIX hydrolase n=1 Tax=archaeon TaxID=1906665 Rep... [more]
A0A4D9D3K8_9STRA5.970e-3238.92Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A5J4YLI7_PORPP1.910e-2331.39Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S2ZFG6_9RHOD2.130e-2232.64Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig97contigF-serratus_M_contig97:223130..232237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.2
Seed ortholog evalue9.3e-95
Seed eggNOG ortholog2880.D7G6B3
Hectar predicted targeting categorysignal peptide
EggNOG OGs2CFIT@1,2S4K6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1841
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig97.21011.1prot_F-serratus_M_contig97.21011.1Fucus serratus malepolypeptideF-serratus_M_contig97 223898..231872 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932746.8927011-UTR-F-serratus_M_contig97:223129..2238971622932746.8927011-UTR-F-serratus_M_contig97:223129..223897Fucus serratus maleUTRF-serratus_M_contig97 223130..223897 -
1690964453.8083177-UTR-F-serratus_M_contig97:223129..2238971690964453.8083177-UTR-F-serratus_M_contig97:223129..223897Fucus serratus maleUTRF-serratus_M_contig97 223130..223897 -
1622932746.9789531-UTR-F-serratus_M_contig97:231872..2322371622932746.9789531-UTR-F-serratus_M_contig97:231872..232237Fucus serratus maleUTRF-serratus_M_contig97 231873..232237 -
1690964453.8661754-UTR-F-serratus_M_contig97:231872..2322371690964453.8661754-UTR-F-serratus_M_contig97:231872..232237Fucus serratus maleUTRF-serratus_M_contig97 231873..232237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932746.911043-CDS-F-serratus_M_contig97:223897..2242031622932746.911043-CDS-F-serratus_M_contig97:223897..224203Fucus serratus maleCDSF-serratus_M_contig97 223898..224203 -
1690964453.8244195-CDS-F-serratus_M_contig97:223897..2242031690964453.8244195-CDS-F-serratus_M_contig97:223897..224203Fucus serratus maleCDSF-serratus_M_contig97 223898..224203 -
1622932746.9259326-CDS-F-serratus_M_contig97:224607..2247691622932746.9259326-CDS-F-serratus_M_contig97:224607..224769Fucus serratus maleCDSF-serratus_M_contig97 224608..224769 -
1690964453.834973-CDS-F-serratus_M_contig97:224607..2247691690964453.834973-CDS-F-serratus_M_contig97:224607..224769Fucus serratus maleCDSF-serratus_M_contig97 224608..224769 -
1622932746.946376-CDS-F-serratus_M_contig97:225419..2256071622932746.946376-CDS-F-serratus_M_contig97:225419..225607Fucus serratus maleCDSF-serratus_M_contig97 225420..225607 -
1690964453.8456242-CDS-F-serratus_M_contig97:225419..2256071690964453.8456242-CDS-F-serratus_M_contig97:225419..225607Fucus serratus maleCDSF-serratus_M_contig97 225420..225607 -
1622932746.9657764-CDS-F-serratus_M_contig97:231820..2318721622932746.9657764-CDS-F-serratus_M_contig97:231820..231872Fucus serratus maleCDSF-serratus_M_contig97 231821..231872 -
1690964453.8558779-CDS-F-serratus_M_contig97:231820..2318721690964453.8558779-CDS-F-serratus_M_contig97:231820..231872Fucus serratus maleCDSF-serratus_M_contig97 231821..231872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig97.21011.1

>prot_F-serratus_M_contig97.21011.1 ID=prot_F-serratus_M_contig97.21011.1|Name=mRNA_F-serratus_M_contig97.21011.1|organism=Fucus serratus male|type=polypeptide|length=236bp
MVFVSRPLVMFIASRAQGRFLPFGIARRCKAISSTPDGGKSRHEYEVLGR
DLVYSGWRKIVKKNVRFDGNKSFVFDVVHQENPSVAVFVWHTASKTLTLI
KEFSPGREMVAHGVVAGVYEKNKHDSPLQAAKFELEEEAHLSGGTWHSLC
EDAETTINADKYSSNEFFCWLVVDPYVTPTPRALDDEESIEIERGITMQR
AMSMLDRGELSMVSSFVVLAGVRKLRQLGLVSPGC*
back to top

mRNA from alignment at F-serratus_M_contig97:223130..232237-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig97.21011.1 ID=mRNA_F-serratus_M_contig97.21011.1|Name=mRNA_F-serratus_M_contig97.21011.1|organism=Fucus serratus male|type=mRNA|length=9108bp|location=Sequence derived from alignment at F-serratus_M_contig97:223130..232237- (Fucus serratus male)
GAACTACTGTGTGTGTCAAGCTTTCACTCCGCTGGCACCCATACTCGCAA
GAGACGTGAGCGCAGCCTTTGCTTACCGTGATATCGTGACTCGCACGTTA
TTTCTGGTGTACTCTGGGTGATAGAAAACTCGTGGCAAGCTGGAAAGACG
TAATCCAGATTCCTACAGCTACAACATCTAAAAAGTACTTCCTGTGGTGG
TATTATTCTGGCTCATGACATGACTCCGTGACTGATAACCACGATTTTGC
CATCGAAGGGGAAAATCTCTTTCAACTGCGTCGGGCTGAGCTCTGAACCC
AAGGGAAACGTGTATCCAACGGAGCTAAAGGCCTCTCCATAGCTTGTTGT
CTTCGAGGATTATCTATGGTGTTTGTTTCGCGTCCTTTGGTGATGTTCAT
CGCTTCCAGGGCTCAAGGTACGGAACGAGACTCAACTTCAGGACTTATCA
TATACTGTACACGTACTACAGGTACAGCCAGTGTTCAGAGTAGTATTTGA
TTACTTGTAGACCCACCCTATAGATTGATCAATCCCAAATTTCCAATTTC
AGAGCCAGATTCCGGGGCCATCTTAAACCAAAAATTTATTCTTGAAATGG
TAAAATTAGGATTGGTTTAAACGCAAAAATTTGGCTTCCAAAATTTGGAA
ACGAAAGTTCTAAAGATTGGAAATTGCTTTGAACGGTTCTTCAGCGTTTT
GGACATTCTCAAAACAGAGGACAGCAGTACTTTGGCCCTCGAAAACTTCT
TTCGCAATTGAGTCAGTTTCAACTCAAATACAGATTACCGGGTACTACTT
CAGCTACAGAGAGTACATACAAGAGAAGCGTATGTTAATTGGTCCATGGT
GACCTGCTAAGGCAGCACTCGTTCGGAACTACCTCGAGGTTTACTGGCCC
TGTGCCGGCGAACTTTCGGTAGCGAACGCCATCGGTACGCAAATGCGTGA
CCCGATAAACTCGGGACTGACCCGATGGCGTATGGCGGTTTCATAAATGG
ACGCCCCCGTGGAACTCGGGAGGGATCCCGTAAGTAAGCACCAGATTCAG
ACATACGCACATATAAGGCTCATACTCTTGGACCATCACACCTCAAAGGC
AATGGGCGTGCCATGTTTGAGGCAAAGAAGTAGATAATGGCCATCACAGT
GAGAATCGGTGTGGGAGGGACCACCGAAAAACTGGGACTGCTGAGGTGTC
CTAACTCTTGTTTGGAAATCGGTAACCTCCGTGTGTTTCGGAAATAACGC
CTCCTATAAACCTTCCAAAATTTGGAATGTTGCTAAATATTCGAAATTCC
CGGCTTCGTTTAAACCGACCCTTACAAGGCCACTTCACAATAGTCAAGAC
CAAAAAATCGTGTTTCCTGTGCCCCGAAAATCTGTCATTTTTTCTACTGG
GAAACTTTCGTATACCTAAAATGGTGCTACAAAAGGTAGTACCACTATCA
TAGCGAAATCGGAGTTTTTTTTATTTATTGAAATGAAATGATCGAATTAT
CACATAAGCTGATGTCAAAAATCCAGCCCGTGGTCACAAGGGAGACAAAC
ACCATTCGGAAGGAAAGAACGTACGACGTACTCTCCATACAAAGAGAAAG
CGGAAATGGTACAAAAATACTCGGAAAAAGCGACATCTCCAAAATAAACA
AAAAATAAACAGAAAGAAACACGTGTGGCTATCGAGGCGCCTGCATATCG
AAGGACGATTGAACGAAAGGTCGCGGCTTCAACGAAAGAAAGCATAGAGG
AGACGAAAATAAAGCAAAACAATTTTGTCCCTATCATACAGTCAATGTTC
CCACCTAAACCTATAACCTTTTGACTGATAAGAAGGTTTAGATGCGTTCA
GATTTTCTTTAAAAACAAACATAACACCAGGGAAAAACGTCATGGCATCT
GCAAACAGAACGCCCGGAGGATACAAGTTCGTGCCACTTGTGGCTAGTCA
ACAAGAGCGAGCGAACCAGCACGAGCCCGCTTGCTTTAGGCTACTGTATC
ATCTTCTTGGTCCTTCCCGTGGCAAATAACCCTACAAATACCCGTACTTA
TTCGTCAAGTGATACTGGGGTCTTTTATAGTTGCAACAAGCTGGGATGGT
GTTTGAATGTCAGCGAACAGCTGCTCGGTCTCGACTAAAATGGTCCTATG
TCCGCTTATGTGCCTCTACGAATTTCTAATGGTTGTTATATCTGACTGTC
GATACCGTAGTAGCATGGCTATCGAGAGCTGCTTTGACCCCCGTGTTTAC
AGTAGGAGCTGGCTGATTTCTGTGTTCGGGCATCTACAACTGCTGCTGTA
CTACACTACAAAAGTACGAAGAACTACTAAATATTAATACTTGATTGGTG
TGGTACTATTATTCAAGTTCTATAAACAAGTTAAAATAGTTCGCATCTTT
GTACCTGAGGAGAAAACGAACAACACGCCAACACAGGTCCACCTCGACAG
AGGTGATGATGCTGCACTCACATATTATGTACTATGTACTATGTACTGCG
ACGTCTCTTCGAACATCAATTCATATCTCATATTAATACTAAAGACCATT
GGCTGTATAGCCGTTTGTCGCGATGCTCATTGTCAGCTGCTTCACCGTCT
CGTGCAGGATCTACGCCTTCGATACTTACCGTATCACACAACATGCCTAC
TACATAAAAAGTGAGTGTGGAAAAGAGAGGCGGACATTAATTGGTCATAG
TCCATGGTGAAGCCTGCAAAGGCAGCACCCGTTACTGGAACTATCTTGAG
GACTATGACTACTGGCCCTGTAACGGCGGACTCTCGGCAGTGAACGCCAT
CGGTACGCAATTGCGTGACCCGATTAACTCGGAACTGACCCCATTAGCTC
GGGACTGACCCGATGGCGTATGGCGTTATAAATAGATTGGCGCCGCCGCG
GAAGTCGGGAGAAATCCCGTGAGTAAGCACCAGATTCAGCCTGAGTGTGG
AGAATGAGCAGGCTGGCGCGGGACGGGACGGCCGAACCCGTCTCGCGAGA
CCAAGTTCTCAGGCGCGATCGGGGACAGGGAAATATTCATTTTCCCTGTT
CAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCCATACTCT
GTCTGCTACATGTGATCACCGTACATACATACTGTACAACACATACTCTC
AGTAGAATGGTCAACCGTCGTGCGGGAAAGTCGCACAAGGAGGTAGGTAA
TCCTGGTACGGCGTACAACCATCCGCATGCATGTGTCGTTTGTCTCGAGA
CTTTGTGCGCACTCTCGAGAGGGTTTAAGGTATTCCTTTGCCGTCCGTGT
AGCAGAGCGACAGCGGCCTACACGGCGCTCAAGGCATGCCTTATTTGGCA
ATAAATGAACACCACATCAAAGAAAGGCGTGTCACCTGGGCTGGGGTTGG
CAAATCTGTGCGAGAAAGAAATGATAGAGCCAGCACTACAGAAATCCGTG
CTCCCAGAAATTCGAACACAGAAATCACGTATTTATGGAAACGTATCAAT
GCTCCACAGCTCCCAGAAACCCGTACTTTTGGGGTCCCGTAAGAAGTGGT
CTACTATAAGAGATAAAATATTGTTTCGTGGAATCTGACTCGGGATTGTA
CCTCAATGGTTTTCAAATCTCTTCTTACATCATAGCCTTGTATCGGCCCG
AAAAATATAGTTTAAAGAAAAATCTGAACGCATGTAGACCTTCTATAATA
GTCGGGGGAAAATATCAAAACGTTTAGGTGGGATCATAGGCTGCAAATAC
AAAACCTCTTGTTGAAAGATGAAATCGCCAACCAGGTGCACGATTTTGGG
GACTGCAGAAAAAGCCATCTAATGAGTGACTTAAAGTTGACGCTTGTGTT
GTAGTGAAGCTATGGCGGGTTTGAGTCGTCCACACTGCTGCCTCCGATAT
TTTCTCGACTGTATCGCACATGTCAACTGTACCAATAAATAGCGGGTATG
GGAACGAGAGGCACATATTAATTGGTCCATGGTGACCTGCCAAGGCAGCA
CTCGTTCGGAACTACGTTGAGGTTTACCGGCCCTGTACCGGCGAACTCTC
GGCAGTGGACACCATCGGTGCGCAAATGCGTGACCCGATAAACTCGGGAC
TGGCCCGATGGCGTGTTGCTGTTTTTAGTAATGAAATGGACGCCGCTGCG
GAAACCGGGAGGAATCCCGTAAGTAAGCACCAGATTCACCCTGAGTGTGG
AGATTGAGCGAACTCACGCGGGATGGGACGGCCGAACCTGTCTTGCGAGA
CCAAATTATCAGGAGCGAACGCAGACAAGGAAAATAATATTTTGGAGATT
GAGCGGACTGGCGCGGGATGGGACGGCCGAACCTCTCTTGCGAGACCAAA
TTCTCAGGAGCGAAAGAAGACAGGGAAAATAATATTTTCCCTATTCCGTC
GCTCGAATAACCTTGAGGACTGGGCTACTGGCCTTGTGCTGGCGGACTCT
CGGCAGTGAACGCCATCGGTACGCTGTTGCATAAACCGATAACTCGGGAC
TGGCCCGATGGCGGTTCACGGTATATGTGGACGACGTCGCGGAAATCGGG
AGGAATCCAGTTACTGAGCACCAGATTCAGCCTGAGTGTGAAGATTGATC
AGACGGCTGAACCCGTCTTGCGAAAATAAATTCTCAGGCGCGATCGGAGG
CAGGGAAAAATTAGCCGACCACGAGCAGGATTGGCAACCATACCCTGCTG
AAGTGCTGACCATACTGCGACGGATATAACGTGCCAACATCCGCGAACTA
GTGCATCCAACAGTCTGTGGTGTGTTCACCTTGGCGTACACACGAGCTAT
GCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGT
GCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTTGTGAGCGGCGCTTG
ATTTTGTTCTTGTTGGTCCAAATCACCATGTTTGATCTGATCTTATATTT
CGTGTCCAACGTACAGCAGGATGATGGAAGGCATTTAAAAGTCTATTTGT
ATTATGTTTGTTGTGACGTTAGTCAAAACTGGATGAAAAACGATAGATCG
TCGACTATGGGAATGCCTGAGAACATAGCAACGCTTGCTTCAGCGCGGAG
CATTCGGCATCACACGCTTTGCCTAGGGGTGGGGCGATCATGAATAGAAC
TCGCGAGTGGGTCGGTGTCTGCCTCGTCGCGGTGGCTTTTGTAGTGATTA
AAAGCAGCTATGTAATAGGGCTACAGGAATGCCTGACCTCTCGTATACCT
CGCTCGGGCGTTGTTTGCTGCTGGAAAAAAAAACTGAAAAAAGCAGCAGC
AGTTGGCCCTACTCAATTTTCTGCGGCTTGCTCTTGATCATTTATGATGA
TCATTGATTATGTTATAATAGCCAGCCATCGCAGGGTGACGCTGTGGCAC
TCTTCTGAAGCATTGCCTACGAGCAACACTATTAATATAAATACTGCGTA
CCACCCTGGATCCGAGAATATTTTGAAAACTAATAGCTCTATAATAGTTA
CCTCTGTGAATGCTTCGCTGGTTACGCAATTCCATTTTTCAGCGCCCGAA
TCCAGATAGGGAATCACTGAAAAAGGGGAATCACTTTTCAGCCGGCGAGC
AACCTCGACCGATCGATTAAAAATGGGCTGGTAAAGCATGACCATTTTTC
GCCCCATACAAAGTTCTCCAGAAAAAGGGCCGCTGTAAAAGTGGTGGTTT
CAATTTTCATGGACCCTAATTTTTTAGCCCATACAAGATGGTCTTACTGG
CTATTTGTCAGTTGTCCGTCCTATTGGACTCTTTTGGTGGAGGGAGAGGC
GACCCTTAATTTTTTCAGTTTTGAGACCTTCGCTCGATAGTCTCATTCGG
GCCTTACCTGCTAACTTTGAAAAAAGACAGCACGGTAAATATTCAAATAT
CCATCGCAACCCCATCGTTTGTAATTATTAATATTACAGTAGTAATTCTA
CTTCTGCTTGTACTTCTATATGTAACTCACTGACGTGTCATCAGTACCCT
GGAACCTATTAAACAGTACCAGTACAAAGCAGATTTGTAGGTCTTCTAGT
GTTACTATTAATATACTGAGTACTAGTTGTACCACAGTAGTGGTAGTGTG
TATGTCCCTGCGTCGTGATGCCGTTCCTTCCAAGCAACCAATTTTCCCAT
GCCATGCCACCTACGTGACGTTCGAAGTGCGATGCGGACACTCTGTAATG
ATTGAAGCCCAAGTTGTCTTGCCCAATCATGTGGAAAGCCTCCGGCGGTT
CTTGTGTACGTTGAATCGTGCCTTGTACCCTGAGTGCAAGTACAGTAGCT
TCTTCGTGGAGGATCGGCGATCAAACAATTTAAAGTATTCTATTCGGAAG
ACATTCTTGGCAATTTTGCAGTCAGTCCCCTGAGGCCATGCCATCTCCTG
TGTACGGTTCGACAGTTTCGACAGGTTCGAGAGCCTACTTTACTAGTAGA
GCATTTTGAAAACCTATTATTATTAGAGCCTAGTCTCATTGCCTTGCGGG
TGTGCGCGAGTACGCTTATTTCTCGTCGAAATCGTGACAATCGCTCCTGA
ACCGTCCACGAGTTCCACCCAAATTATATATTAATAGTTGTAATATGTTC
ACGACCGATCCTGTTGCGCCTACGATATAGGACGTTTTTTGCCCTTTGGA
ATTGCAAGACGATGCAAGGCAATCAGCTCCACTCCTGATGGTGGGAAATC
GAGGCATGAGTACGAGGTACTTGGCCGCGACTTGGTATATTCTGGATGGC
GCAAAATCGTGAAGAAAAATGTTCGGTTTGATGGTAACAAGAGCTTCGTG
TTCGACGTTGTTCACCAGGTACCATACTGTACCATCATTAGGCTCCTTTG
CTGCTTCATTGCTTTTCCGAGCTGCATTTCGCTCACGATTAATCAGGATG
AATCAAATCATGATGAATCAAATGATGACGAATTAGATGATGATACGAAG
CACTGCGTCATGTATTCACGTAATCTCGGTGCGACTGACTTGGGTTCCAA
AGTGGAGTACATCACCAATATCAAATATCAAGCGAAAACTCTTGTGCGCG
GTAAGAGTGGTTGTAGTTTTCGGTGGTGCCTGTAGCGCATAGGGGGACCC
GCCCCTACTGCGGGATCCCACCCTACACCGCGGGATCCCTCCCCCCCCTG
CACTGCGGCATCCCCCACCCTAAGCATCTAAAATAAAAAGTGCATTGGGG
CGTCTTTGTTTTTTTGTGAGTTAGTCTCGTTGGTTCGCCCCAACAAAATG
AACACACTCCTAGCTAGCACTGTATGTTTTACTTTTGTGTTTTTGTGTTT
TTTGCTGTTACCTTTCTCCTAGCCAATGCACTACAGGTGCCACCGCGTTA
TGTGTTGTGGTGTTGCCCCTGTTCCATATTAAAATACTATATTGATGGTG
CGTCAGTCACAACATGCTTGTAAACGCCTCCCGTCATCTGCGCTGTTGTT
TTTTCTTTTTTAACACAGGAAAACCCTTCGGTGGCTGTGTTCGTGTGGCA
TACGGCGAGCAAGACCTTAACTCTCATTAAAGAGTTCTCACCGGGGCGAG
AGATGGTTGCGCATGGTGTGGTGGCCGGTGTCTACGAGAAGAACAAGCAC
GATTCTCCACTGCAAGCGGCGAAGTTTGAAGTAAGTGGGAACCAGTAAAT
ACGCTGCTCCCTACAACGCTGACATGACACGCTGGCACTCTCGATTCTTA
TCCCTCAAGATAGCGGACAGCTGAAACGTCACTTCACTATTAAAGTAACA
GCCGTAACGCATTTCACTAATGCATTTCACTTTCCTTCTACGTGTAGTCA
TAATGCATACATGTAGCTAATACACACATGTAGCTAATGCATATATGTAG
CCAATGCGTACATGTAGCCAATACATACATGTAGCCGAAACATACATGTA
GCTAATCGTGCTGCCTCTTCGCATACCAATCTCGAACTCCAGCGAACTAA
GGTATCTCCTCAGATGGCCAACCATGCAATATCACGTTGACGTCTCCAAA
ACGCGCGTGTTACCCCCGCCGCCCATGCGAGCAGCTTGAGGAAGAGGCTC
ACCTGTCCGGAGGAACCTGGCATTCGCTGTGCGAGGACGCCGAAACAACG
ATCAACGCAGACAAGTATAGCTCGAACGAGTTTTTCTGCTGGTTGGTCGT
AGATCCGTACGTCACTCCGACGCCGAGAGCTCTCGACGACGAAGAGTCCA
TCGAAATAGAAAGGGGTATCACCATGCAGCGAGCTATGAGCATGCTGGAT
CGTGGCGAACTTTCGATGGTTTCGAGCTTCGTGGTCCTTGCCGGAGTACG
AAAGCTTCGACAGCTAGGCCTTGTAAGTCCGGGATGCTAACGATTCGGTC
AGGGGGGGACTTGATCGCTGTACAAACTGTTGTTACAGGTCAGAGGTCAT
AGGTAATGATAACATCTCATGTGGTGGATGGTGGATGGCGACCGCAAGTG
CCCGCTTTTTGTTTTTTTGCTGAAGGGAGGTGTTATATATATGGTCACAC
ATATAGCGGGGGTATGGATCAACCGGTTAAGGTTGCCAATCCTGCACGTG
GTCAGCGGAACACGAAAAATGGATATTTCCCTGTCCGCGTTCGTGCCTGA
GAATTTGGTCTCGCGAGCGGGTTCGGCAGTCCCGTCCCGCGTCAGCCTGC
TCATCTCCGTACTCAGGCTGAATCTGGTGCTTACTTACAGGATTCCCCCC
GAGTTCCGCGGCGGCGTCCATTTATGAAACCGCCATACGCCATCGGGTTA
GTCCCGAGTTTATCGGGTCACGCAAATATGTACCGATGGCGTTCAATGCC
GAGAGTCTGCCGGCACGAGGCCAGTAAACCTCAAGGTAGTTCCGAACGAG
TGCTGCCTTTGCAAGTTACCATGGACTAATTAATATTCGCCTCTCTTTCC
CATACCCACTATTGGTATATGAAATGGATTAAATAAGCAAAACATTTCAT
TGCGATTCTTCATGTTGTACTTTAAGCAATGGATGCACTGTACTGTATAA
GAACTTGCAGGTAAAAAGTTTAGTAGAAGTAGGGTTTTTATAGATTTAAT
TTGGAGTACTTAACTGAAATACACACGAAGAATGCTAAAAGTTAGAATTT
GAAACGAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig97:223130..232237-

>mRNA_F-serratus_M_contig97.21011.1 ID=mRNA_F-serratus_M_contig97.21011.1|Name=mRNA_F-serratus_M_contig97.21011.1|organism=Fucus serratus male|type=CDS|length=1416bp|location=Sequence derived from alignment at F-serratus_M_contig97:223130..232237- (Fucus serratus male)
ATGGTGTTTGTTTCGCGTCCTTTGGTGATGTTCATCGCTTCCAGGGCTCA
AGATGGTGTTTGTTTCGCGTCCTTTGGTGATGTTCATCGCTTCCAGGGCT
CAAGGACGTTTTTTGCCCTTTGGAATTGCAAGACGATGCAAGGCAATCAG
CTCCACTCCTGATGGTGGGAAATCGAGGCATGAGTACGAGGTACTTGGCC
GCGACTTGGTATATTCTGGATGGCGCAAAATCGTGAAGAAAAATGTTCGG
TTTGATGGTAACAAGAGCTTCGTGTTCGACGTTGTTCACCAGGACGTTTT
TTGCCCTTTGGAATTGCAAGACGATGCAAGGCAATCAGCTCCACTCCTGA
TGGTGGGAAATCGAGGCATGAGTACGAGGTACTTGGCCGCGACTTGGTAT
ATTCTGGATGGCGCAAAATCGTGAAGAAAAATGTTCGGTTTGATGGTAAC
AAGAGCTTCGTGTTCGACGTTGTTCACCAGGAAAACCCTTCGGTGGCTGT
GTTCGTGTGGCATACGGCGAGCAAGACCTTAACTCTCATTAAAGAGTTCT
CACCGGGGCGAGAGATGGTTGCGCATGGTGTGGTGGCCGGTGTCTACGAG
AAGAACAAGCACGATTCTCCACTGCAAGCGGCGAAGTTTGAAGAAAACCC
TTCGGTGGCTGTGTTCGTGTGGCATACGGCGAGCAAGACCTTAACTCTCA
TTAAAGAGTTCTCACCGGGGCGAGAGATGGTTGCGCATGGTGTGGTGGCC
GGTGTCTACGAGAAGAACAAGCACGATTCTCCACTGCAAGCGGCGAAGTT
TGAACTTGAGGAAGAGGCTCACCTGTCCGGAGGAACCTGGCATTCGCTGT
GCGAGGACGCCGAAACAACGATCAACGCAGACAAGTATAGCTCGAACGAG
TTTTTCTGCTGGTTGGTCGTAGATCCGTACGTCACTCCGACGCCGAGAGC
TCTCGACGACGAAGAGTCCATCGAAATAGAAAGGGGTATCACCATGCAGC
GAGCTATGAGCATGCTGGATCGTGGCGAACTTTCGATGGTTTCGAGCTTC
GTGGTCCTTGCCGGAGTACGAAAGCTTCGACAGCTAGGCCTTGTAAGTCC
GGGATGCTAACTTGAGGAAGAGGCTCACCTGTCCGGAGGAACCTGGCATT
CGCTGTGCGAGGACGCCGAAACAACGATCAACGCAGACAAGTATAGCTCG
AACGAGTTTTTCTGCTGGTTGGTCGTAGATCCGTACGTCACTCCGACGCC
GAGAGCTCTCGACGACGAAGAGTCCATCGAAATAGAAAGGGGTATCACCA
TGCAGCGAGCTATGAGCATGCTGGATCGTGGCGAACTTTCGATGGTTTCG
AGCTTCGTGGTCCTTGCCGGAGTACGAAAGCTTCGACAGCTAGGCCTTGT
AAGTCCGGGATGCTAA
back to top