mRNA_F-serratus_M_contig97.21008.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig97.21008.1 vs. uniprot
Match: A0A7S2K0F2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K0F2_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.170e-28 Identity = 91/296 (30.74%), Postives = 147/296 (49.66%), Query Frame = 1 Query: 967 AVAGGIPSAS-STMIRFQGKPGDLNAP-AHAWGEGDHTIFRLR-GKRYIQDKVKAKPADSLYYMVGMDTFATEARVGNLASEVDLGPISQNLPKISVPGVR--------PLLILNVQLPSASPALMSSAEDGPGYQCVFYFRMKESTVRALENLETASEAVKLWVAYCQHMGVNDEYHGRFKCVAVIGNHERLGLPGFVTKYNGRPVLINKSGKWVRGE--------------TYIENTINVHRFSFIAKKSLHSLKSIFKDMVLHLGFTVEGRSPDELPESILACSTLYYPRLDS 1779 A+ +P AS +T Q + NA + W E D T F +R G Y +K+KA SLY V + + + R ++A + P+ ++L +S V +LI++ Q P +P++M S DG G + V Y + + L+N +S V+L+ + + N+ RFKC+ + + +R L G++ YNG+PVLI SG RG +Y+E + NVH + ++AK+ +L FK M + +GFT+EGR DELPE IL + + Y +D+ Sbjct: 21 ALQSTLPKASPNTQNTSQRTNTNKNANISSCWEEIDGTSFHVRKGPNYKSNKLKAPSNTSLYDTVSIRRYNSHKRTQHIAMKF---PLPEDLLSLSAEEVELCKLHDVPHVLIIHFQFPYETPSMMKSRTDGAGGEVVLYLKPSARLLMELKNSTQSSADVRLFQKWQKECTKNEAMRRRFKCMGSVCDLKRHNL-GWIAPYNGKPVLITDSGDVYRGSVQLQHGGRVRTTEVSYLELSANVHAWCYLAKRGFVTLIPKFKVMQIEVGFTIEGREDDELPECILGAARVNYLSVDA 312
BLAST of mRNA_F-serratus_M_contig97.21008.1 vs. uniprot
Match: A0A3B6JHN3_WHEAT (EDR2_C domain-containing protein n=12 Tax=Triticinae TaxID=1648030 RepID=A0A3B6JHN3_WHEAT) HSP 1 Score: 130 bits (327), Expect = 1.590e-28 Identity = 82/252 (32.54%), Postives = 127/252 (50.40%), Query Frame = 1 Query: 1054 WGEGDHTIFRLRGKRYIQDKVKAK-PADSLYYMVGMDTFATEARVGNLASEVDLGPISQNLPKISVPGVRPLLILNVQLPSASPALMSSAEDGPGYQCVFYFRM------------KESTVRALENLETASEAVKLWVAYCQHMGVNDEYHGRFKCVAVIGNHERLGLPG----FVTKYNGRPVLINKSGKWVRGETYIENTINVHRFSFIAKKSLHSLKSIFKDMVLHLGFTVEGRSPDELPESILACSTL 1758 W + D ++F+LR + +++DK K P + YY +G+D FA+ +V ++A +DL + P +P LLI+N+Q+P+ A+ DG G+ YFR+ KES VR LEN E VK + + Y R K +A + N + L L V YN +PVL + GE Y E +++HRFS+IA++ L S + K +L LG T++ + +ELPE +L C L Sbjct: 285 WSQIDPSVFKLRSETFLRDKKKCPAPNYAAYYPIGVDLFASPKKVSHIAEHIDLPQVK---PHHKLPS---LLIINIQMPTYPAAMFLGDSDGEGFSLCLYFRLSEYFDKEVSEHFKESIVRFLEN---ECEKVKGFASESTMA-----YRDRLKIMAGLVNPDDLQLSSTEKKLVQAYNEKPVLSRPQHSFYEGENYFEVDLDIHRFSYIARRGLDSFRERLKSGILDLGLTIQAQKQEELPEQVLCCVRL 522
BLAST of mRNA_F-serratus_M_contig97.21008.1 vs. uniprot
Match: K4AMU6_SETIT (EDR2_C domain-containing protein n=13 Tax=Panicoideae TaxID=147369 RepID=K4AMU6_SETIT) HSP 1 Score: 130 bits (326), Expect = 2.200e-28 Identity = 82/252 (32.54%), Postives = 129/252 (51.19%), Query Frame = 1 Query: 1054 WGEGDHTIFRLRGKRYIQDKVK-AKPADSLYYMVGMDTFATEARVGNLASEVDLGPISQNLPKISVPGVRPLLILNVQLPSASPALMSSAEDGPGYQCVFYFRM------------KESTVRALENLETASEAVKLWVAYCQHMGVNDEYHGRFKCVAVIGNHERLGLPG----FVTKYNGRPVLINKSGKWVRGETYIENTINVHRFSFIAKKSLHSLKSIFKDMVLHLGFTVEGRSPDELPESILACSTL 1758 W D ++F+LR + +++DK K A P + YY +G+D FA +V ++A ++L I + P + LLI+N+Q+P+ ++ DG G+ V YFR+ K+S +R EN SE VK + + M Y R K +A + N + L L V YN +PVL + GE Y E +++HRFS+IA+K L S + K+ +L LG T++ + +ELPE +L C L Sbjct: 288 WSRIDPSLFKLRSETFLKDKKKCAAPNYAAYYPIGVDLFACPKKVHHIAQHIELPQIRTH------PKLPSLLIVNIQMPTYPASMFLGDSDGEGFSLVLYFRISEYYDKEVSEHFKDSIMRFFEN---ESEKVKGFTSESTIM-----YRDRLKIMAGLVNPDDLQLGSTERKLVQAYNEKPVLSRPQHNFYEGENYFEVDLDIHRFSYIARKGLDSFRERLKNGILDLGLTIQAQKQEELPEQVLCCVRL 525
BLAST of mRNA_F-serratus_M_contig97.21008.1 vs. uniprot
Match: A0A2R6WIW5_MARPO (EDR2_C domain-containing protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WIW5_MARPO) HSP 1 Score: 130 bits (327), Expect = 2.920e-28 Identity = 84/250 (33.60%), Postives = 126/250 (50.40%), Query Frame = 1 Query: 1054 WGEGDHTIFRLRGKRYIQDKVK-AKPADSLYYMVGMDTFATEARVGNLASEVDLGPISQNLPKISVPGVRPLLILNVQLPSASPALMSSAEDGPGYQCVFYFRMKESTVRA--------LENLETAS-EAVKLWVAYCQHMGVNDEYHGRFKCVAVIGNHERLGLPG----FVTKYNGRPVLINKSGKWVRGETYIENTINVHRFSFIAKKSLHSLKSIFKDMVLHLGFTVEGRSPDELPESILACSTLY 1761 W E + ++F+LRGK Y +DK K A P SL+ +G+D F + ++ ++A V+L L ++PGV I+NVQLP PA+ +G G V YF++ E +V+ L T E VK +V H + R K VA + N E + G + YN +PVL + RG Y+E ++VHRFS+IA+K + + K VL +G T++ DELPE +LA L+ Sbjct: 353 WSEVEPSVFKLRGKHYSKDKKKFAAPNYSLFVPIGVDLFMSSQKLDHIAQYVELPSQDVALGADTLPGV---FIVNVQLPLYPPAIFMGDGNGDGLSLVLYFKLSEESVKQAPTFVKDMLRKFVTDEVEKVKAFVGESHH-----PFRDRLKVVARLVNPEEIHFSGAEKKLLVNYNEKPVLSRPQHFFYRGANYLEVDLDVHRFSYIARKGFDTFRERLKHCVLDIGLTLQATKQDELPEQVLAAVRLH 594
BLAST of mRNA_F-serratus_M_contig97.21008.1 vs. uniprot
Match: A0A803MNJ8_CHEQI (EDR2_C domain-containing protein n=5 Tax=Chenopodioideae TaxID=1307796 RepID=A0A803MNJ8_CHEQI) HSP 1 Score: 127 bits (319), Expect = 3.650e-28 Identity = 74/243 (30.45%), Postives = 128/243 (52.67%), Query Frame = 1 Query: 1051 AWGEGDHTIFRLRGKRYIQDKVK-AKPADSLYYMVGMDTFATEARVGNLASEVDLGPISQN--LPKISVPGVRPLLILNVQLPSASPALMSSAEDGPGYQCVFYFRMKESTVRALENLETASEAVKLWVAYCQHMGVNDEYHGRFKCVAVIGNHERLGLPG----FVTKYNGRPVLINKSGKWVRGETYIENTINVHRFSFIAKKSLHSLKSIFKDMVLHLGFTVEGRSPDELPESILACSTL 1758 +W ++FR+RG+ Y +DK+K P Y +G+D FA ++ ++A ++L + N LP PLLI+N+Q+P+ +P++ DG G V YFR+ ++ + + + + KL + + Y R K ++ + N E L L + Y +PVL ++ +G Y E I+VHRFS++++K+L SL+ K+ +L LG T++ + P+ELPE +L C L Sbjct: 159 SWSAISPSVFRVRGENYFKDKMKNVAPGYCPYTPIGVDLFACSEKISHIAQHLELPSVQGNSKLP--------PLLIVNIQMPTYAPSMFLGDIDGEGISLVLYFRLSDNFDQDVPS-DFIDSVKKLVDNDTEKLKSVVPYRERLKILSGVVNPEDLQLSSTEKRLLNAYKDKPVLSRPQHEFFKGPDYFEIDIDVHRFSYVSRKALESLRERLKEGILDLGLTIQAQKPEELPEKVLCCMRL 392 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig97.21008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig97.21008.1 >prot_F-serratus_M_contig97.21008.1 ID=prot_F-serratus_M_contig97.21008.1|Name=mRNA_F-serratus_M_contig97.21008.1|organism=Fucus serratus male|type=polypeptide|length=600bp LTHTGKTFICWRGSSPETMSDSLSRRRPCWLTDYADIPVPPTEEDFVMVGback to top mRNA from alignment at F-serratus_M_contig97:104044..128357+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig97.21008.1 ID=mRNA_F-serratus_M_contig97.21008.1|Name=mRNA_F-serratus_M_contig97.21008.1|organism=Fucus serratus male|type=mRNA|length=24314bp|location=Sequence derived from alignment at F-serratus_M_contig97:104044..128357+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig97:104044..128357+ >mRNA_F-serratus_M_contig97.21008.1 ID=mRNA_F-serratus_M_contig97.21008.1|Name=mRNA_F-serratus_M_contig97.21008.1|organism=Fucus serratus male|type=CDS|length=3600bp|location=Sequence derived from alignment at F-serratus_M_contig97:104044..128357+ (Fucus serratus male)back to top |