mRNA_F-serratus_M_contig967.20991.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig967.20991.1
Unique NamemRNA_F-serratus_M_contig967.20991.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig967.20991.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.070e-11
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:  121 VLKAVPADESSHGDLGVEIRIRLYPDGAMSKLLEEVASDPENATVQLQGPFPVE 282
             LK VPA +++ G L +E+RIRLY DGAMSKLLE +A D +N  VQLQGPF ++
Sbjct: 1508 TLKVVPASQTTEGVLCIEMRIRLYHDGAMSKLLERLAKDTDNPAVQLQGPFVIQ 1561
[Close]
BLAST of mRNA_F-serratus_M_contig967.20991.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 5.490e-11
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   91 GRNGGGNERTVLKAVPADESSHGDLGVEIRIRLYPDGAMSKLLEEVASDPENATVQLQGPF 273
            G++G G   T  + VPA E+S G L +E+RIRLY DGAMS+LLE+++ D +N  +QLQGPF
Sbjct: 1010 GKDGSGKGATPPRVVPAQETSEGVLCIEMRIRLYHDGAMSQLLEKLSKDTDNPAIQLQGPF 1070
[Close]
BLAST of mRNA_F-serratus_M_contig967.20991.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.030e-10
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:  127 KAVPADESSHGDLGVEIRIRLYPDGAMSKLLEEVASDPENATVQLQGPFPVEDVA 291
            K VPA+E++ G L +E+RIR+Y DGAMSKLLE+++ D +N  VQLQGPF V  +A
Sbjct: 1189 KVVPAEETTEGVLCIEMRIRMYHDGAMSKLLEKLSKDTDNVAVQLQGPFLVNKLA 1243
[Close]
BLAST of mRNA_F-serratus_M_contig967.20991.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.410e-10
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:  127 KAVPADESSHGDLGVEIRIRLYPDGAMSKLLEEVASDPENATVQLQGPFPVEDVA 291
            K VPA E++ G L +E+RIR+Y DGAMSKLLE+++ D +NA VQLQGPF +  +A
Sbjct: 1195 KIVPAGETTEGILCIEMRIRMYHDGAMSKLLEKLSQDTDNAAVQLQGPFLINKLA 1249
[Close]
BLAST of mRNA_F-serratus_M_contig967.20991.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.920e-10
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  121 VLKAVPADESSHGDLGVEIRIRLYPDGAMSKLLEEVASDPENATVQLQGPFPVE 282
             LK VPA E+  G L +E+RIRLY DGAMSKLLE +A D +N TV+LQ PF ++
Sbjct: 1269 TLKVVPAGETKAGVLCIEMRIRLYTDGAMSKLLENLAKDSDNPTVRLQAPFVIQ 1322
[Close]
BLAST of mRNA_F-serratus_M_contig967.20991.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.850e-10
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  121 VLKAVPADESSHGDLGVEIRIRLYPDGAMSKLLEEVASDPENATVQLQGPFPVE 282
             L  VPA +++ G L +E+RIRLY DGAMSKLLE +A D +N  VQLQGPF ++
Sbjct:  818 TLIVVPASQTTEGVLCIEMRIRLYHDGAMSKLLERLAKDTDNPAVQLQGPFVIQ 871
[Close]
BLAST of mRNA_F-serratus_M_contig967.20991.1 vs. uniprot
Match: A0A6H5K5R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R1_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 2.080e-5
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:  121 VLKAVPADESSHGDLGVEIRIRLYPDGAMSKLLEEVA 231
             LK VPA E+  G L +E+RIRLY DGAMSKLLE +A
Sbjct:   44 TLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLESLA 80
[Close]
BLAST of mRNA_F-serratus_M_contig967.20991.1 vs. uniprot
Match: D8LN38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN38_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 3.680e-5
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  175 IRIRLYPDGAMSKLLEEVASDPENATVQLQGPFPVEDVA 291
            + IR+Y DGAMSKLLE+++ D +N TVQLQ PF +E +A
Sbjct:    1 MHIRMYHDGAMSKLLEKLSEDADNPTVQLQVPFLIEKLA 39
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig967.20991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JBL8_9PHAE4.070e-1159.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQW8_ECTSI5.490e-1154.10Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J2_ECTSI1.030e-1058.18Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI1.410e-1058.18Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LFE6_ECTSI1.920e-1059.26Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7FX04_ECTSI4.850e-1057.41Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
A0A6H5K5R1_9PHAE2.080e-564.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN38_ECTSI3.680e-558.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig967contigF-serratus_M_contig967:68911..69411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog2880.D7FQW8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size292
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932742.4795249-CDS-F-serratus_M_contig967:68911..689681622932742.4795249-CDS-F-serratus_M_contig967:68911..68968Fucus serratus maleCDSF-serratus_M_contig967 68912..68968 -
1690964451.6761463-CDS-F-serratus_M_contig967:68911..689681690964451.6761463-CDS-F-serratus_M_contig967:68911..68968Fucus serratus maleCDSF-serratus_M_contig967 68912..68968 -
1622932742.4918232-CDS-F-serratus_M_contig967:69177..694111622932742.4918232-CDS-F-serratus_M_contig967:69177..69411Fucus serratus maleCDSF-serratus_M_contig967 69178..69411 -
1690964451.6867948-CDS-F-serratus_M_contig967:69177..694111690964451.6867948-CDS-F-serratus_M_contig967:69177..69411Fucus serratus maleCDSF-serratus_M_contig967 69178..69411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig967.20991.1prot_F-serratus_M_contig967.20991.1Fucus serratus malepolypeptideF-serratus_M_contig967 68912..69411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig967.20991.1

>prot_F-serratus_M_contig967.20991.1 ID=prot_F-serratus_M_contig967.20991.1|Name=mRNA_F-serratus_M_contig967.20991.1|organism=Fucus serratus male|type=polypeptide|length=97bp
PKANKGTGLSLHTGTNQKSLVGKGTGSGRGGRNGGGNERTVLKAVPADES
SHGDLGVEIRIRLYPDGAMSKLLEEVASDPENATVQLQGPFPVEDVA
back to top

mRNA from alignment at F-serratus_M_contig967:68911..69411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig967.20991.1 ID=mRNA_F-serratus_M_contig967.20991.1|Name=mRNA_F-serratus_M_contig967.20991.1|organism=Fucus serratus male|type=mRNA|length=501bp|location=Sequence derived from alignment at F-serratus_M_contig967:68911..69411- (Fucus serratus male)
CCGAAAGCCAACAAGGGCACCGGCCTCTCTTTGCACACCGGCACAAACCA
AAAGTCGCTCGTTGGCAAAGGCACTGGAAGTGGCAGAGGGGGTAGAAACG
GCGGAGGTAACGAGCGCACGGTGCTGAAGGCTGTCCCTGCTGATGAGTCC
TCGCACGGAGATTTGGGCGTGGAGATACGAATCAGACTGTACCCGGACGG
CGCGATGAGCAAGCTCCTGGAGGAAGTGGCCAGCGTGAGGATCCCCGTCG
ATCCGCAGCGTTTTTGGTTCAGTACCAAAAAACATACAAATATATTTAGA
TATGCTTATCTTGTGGGCTACCGAGCTGAACGTCACTTCGCTGCCCCCGG
ATGGGGTGACGATTTATCTTACCAACCTCCGTTACCCTCTCGCCCTCTGC
CCCCCTCCCCTCCTCAACCCAATCACGCCCTCGTCTTTTTTAGGACCCGG
AAAACGCTACGGTCCAGCTGCAAGGGCCGTTCCCTGTCGAGGACGTCGCA
C
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig967:68911..69411-

>mRNA_F-serratus_M_contig967.20991.1 ID=mRNA_F-serratus_M_contig967.20991.1|Name=mRNA_F-serratus_M_contig967.20991.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig967:68911..69411- (Fucus serratus male)
CCGAAAGCCAACAAGGGCACCGGCCTCTCTTTGCACACCGGCACAAACCA
AAAGTCGCTCGTTGGCAAAGGCACTGGAAGTGGCAGAGGGGGTAGAAACG
GCGGAGGTAACGAGCGCACGGTGCTGAAGGCTGTCCCTGCTGATGAGTCC
TCGCACGGAGATTTGGGCGTGGAGATACGAATCAGACTGTACCCGGACGG
CGCGATGAGCAAGCTCCTGGAGGAAGTGGCCAGCCCGAAAGCCAACAAGG
GCACCGGCCTCTCTTTGCACACCGGCACAAACCAAAAGTCGCTCGTTGGC
AAAGGCACTGGAAGTGGCAGAGGGGGTAGAAACGGCGGAGGTAACGAGCG
CACGGTGCTGAAGGCTGTCCCTGCTGATGAGTCCTCGCACGGAGATTTGG
GCGTGGAGATACGAATCAGACTGTACCCGGACGGCGCGATGAGCAAGCTC
CTGGAGGAAGTGGCCAGCGACCCGGAAAACGCTACGGTCCAGCTGCAAGG
GCCGTTCCCTGTCGAGGACGTCGCAGACCCGGAAAACGCTACGGTCCAGC
TGCAAGGGCCGTTCCCTGTCGAGGACGTCGCA
back to top