mRNA_F-serratus_M_contig966.20989.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig966.20989.1
Unique NamemRNA_F-serratus_M_contig966.20989.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig966.20989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig966contigF-serratus_M_contig966:255849..256326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size478
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig966.20989.1prot_F-serratus_M_contig966.20989.1Fucus serratus malepolypeptideF-serratus_M_contig966 255946..256266 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932739.2810655-UTR-F-serratus_M_contig966:255848..2559451622932739.2810655-UTR-F-serratus_M_contig966:255848..255945Fucus serratus maleUTRF-serratus_M_contig966 255849..255945 +
1690964449.9632382-UTR-F-serratus_M_contig966:255848..2559451690964449.9632382-UTR-F-serratus_M_contig966:255848..255945Fucus serratus maleUTRF-serratus_M_contig966 255849..255945 +
1622932739.3084602-UTR-F-serratus_M_contig966:256266..2563261622932739.3084602-UTR-F-serratus_M_contig966:256266..256326Fucus serratus maleUTRF-serratus_M_contig966 256267..256326 +
1690964449.9850123-UTR-F-serratus_M_contig966:256266..2563261690964449.9850123-UTR-F-serratus_M_contig966:256266..256326Fucus serratus maleUTRF-serratus_M_contig966 256267..256326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932739.2947571-CDS-F-serratus_M_contig966:255945..2562661622932739.2947571-CDS-F-serratus_M_contig966:255945..256266Fucus serratus maleCDSF-serratus_M_contig966 255946..256266 +
1690964449.9744978-CDS-F-serratus_M_contig966:255945..2562661690964449.9744978-CDS-F-serratus_M_contig966:255945..256266Fucus serratus maleCDSF-serratus_M_contig966 255946..256266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig966.20989.1

>prot_F-serratus_M_contig966.20989.1 ID=prot_F-serratus_M_contig966.20989.1|Name=mRNA_F-serratus_M_contig966.20989.1|organism=Fucus serratus male|type=polypeptide|length=107bp
MNGGEMHTHNIDISYSILGGYQLIVTGNGRVHTLFFLPRNVACGSPFLFK
KVTRGGFSFLPTGKKERKYNFNNIIHLLIAIILSILIIQYVLVQHLKSST
DRLTIV*
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mRNA from alignment at F-serratus_M_contig966:255849..256326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig966.20989.1 ID=mRNA_F-serratus_M_contig966.20989.1|Name=mRNA_F-serratus_M_contig966.20989.1|organism=Fucus serratus male|type=mRNA|length=478bp|location=Sequence derived from alignment at F-serratus_M_contig966:255849..256326+ (Fucus serratus male)
CCTCTGGAGTCACTTGTCGACGAAACAGCATACGCAATAGAATATCAATA
CAATAGACTAGACTAGACTAGACGGGGATCAGGAACGGTTATCAAGCATG
AACGGTGGAGAGATGCACACACACAACATAGATATCTCCTACTCAATACT
GGGGGGTTACCAGCTCATCGTAACGGGAAATGGAAGAGTACATACCCTAT
TTTTTTTACCACGAAATGTTGCTTGTGGGAGTCCATTCCTGTTTAAAAAG
GTCACGAGAGGAGGTTTCTCATTTCTCCCGACTGGAAAAAAAGAGAGAAA
ATATAACTTTAACAATATTATACATCTATTAATAGCTATTATACTATCGA
TACTAATAATACAGTATGTATTGGTACAACATCTCAAGTCTTCCACCGAC
CGTTTGACAATTGTGTGAAATTCGATTCTTCTGTCGTTGTCACCTTCCGT
GGAACGGGTGCGACCAGGACACCATGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig966:255849..256326+

>mRNA_F-serratus_M_contig966.20989.1 ID=mRNA_F-serratus_M_contig966.20989.1|Name=mRNA_F-serratus_M_contig966.20989.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig966:255849..256326+ (Fucus serratus male)
ATGAACGGTGGAGAGATGCACACACACAACATAGATATCTCCTACTCAAT
ACTGGGGGGTTACCAGCTCATCGTAACGGGAAATGGAAGAGTACATACCC
TATTTTTTTTACCACGAAATGTTGCTTGTGGGAGTCCATTCCTGTTTAAA
AAGGTCACGAGAGGAGGTTTCTCATTTCTCCCGACTGGAAAAAAAGAGAG
AAAATATAACTTTAACAATATTATACATCTATTAATAGCTATTATACTAT
CGATACTAATAATACAGTATGTATTGGTACAACATCTCAAGTCTTCCACC
GACCGTTTGACAATTGTGTGAATGAACGGTGGAGAGATGCACACACACAA
CATAGATATCTCCTACTCAATACTGGGGGGTTACCAGCTCATCGTAACGG
GAAATGGAAGAGTACATACCCTATTTTTTTTACCACGAAATGTTGCTTGT
GGGAGTCCATTCCTGTTTAAAAAGGTCACGAGAGGAGGTTTCTCATTTCT
CCCGACTGGAAAAAAAGAGAGAAAATATAACTTTAACAATATTATACATC
TATTAATAGCTATTATACTATCGATACTAATAATACAGTATGTATTGGTA
CAACATCTCAAGTCTTCCACCGACCGTTTGACAATTGTGTGA
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