mRNA_F-serratus_M_contig965.20975.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig965.20975.1
Unique NamemRNA_F-serratus_M_contig965.20975.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig965.20975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig965contigF-serratus_M_contig965:272816..273848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig965.20975.1prot_F-serratus_M_contig965.20975.1Fucus serratus malepolypeptideF-serratus_M_contig965 272919..273830 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932737.8879106-UTR-F-serratus_M_contig965:272815..2729181622932737.8879106-UTR-F-serratus_M_contig965:272815..272918Fucus serratus maleUTRF-serratus_M_contig965 272816..272918 +
1690964449.1031141-UTR-F-serratus_M_contig965:272815..2729181690964449.1031141-UTR-F-serratus_M_contig965:272815..272918Fucus serratus maleUTRF-serratus_M_contig965 272816..272918 +
1622932737.9305086-UTR-F-serratus_M_contig965:273830..2738481622932737.9305086-UTR-F-serratus_M_contig965:273830..273848Fucus serratus maleUTRF-serratus_M_contig965 273831..273848 +
1690964449.1467946-UTR-F-serratus_M_contig965:273830..2738481690964449.1467946-UTR-F-serratus_M_contig965:273830..273848Fucus serratus maleUTRF-serratus_M_contig965 273831..273848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932737.900289-CDS-F-serratus_M_contig965:272918..2730811622932737.900289-CDS-F-serratus_M_contig965:272918..273081Fucus serratus maleCDSF-serratus_M_contig965 272919..273081 +
1690964449.1168978-CDS-F-serratus_M_contig965:272918..2730811690964449.1168978-CDS-F-serratus_M_contig965:272918..273081Fucus serratus maleCDSF-serratus_M_contig965 272919..273081 +
1622932737.9145784-CDS-F-serratus_M_contig965:273810..2738301622932737.9145784-CDS-F-serratus_M_contig965:273810..273830Fucus serratus maleCDSF-serratus_M_contig965 273811..273830 +
1690964449.1352737-CDS-F-serratus_M_contig965:273810..2738301690964449.1352737-CDS-F-serratus_M_contig965:273810..273830Fucus serratus maleCDSF-serratus_M_contig965 273811..273830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig965.20975.1

>prot_F-serratus_M_contig965.20975.1 ID=prot_F-serratus_M_contig965.20975.1|Name=mRNA_F-serratus_M_contig965.20975.1|organism=Fucus serratus male|type=polypeptide|length=61bp
MILYDKESPTIALQKDTVVRSDFERALTEQYNGCTRMYEQHKFCAVSAVS
ILHTVSSCTE*
back to top

mRNA from alignment at F-serratus_M_contig965:272816..273848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig965.20975.1 ID=mRNA_F-serratus_M_contig965.20975.1|Name=mRNA_F-serratus_M_contig965.20975.1|organism=Fucus serratus male|type=mRNA|length=1033bp|location=Sequence derived from alignment at F-serratus_M_contig965:272816..273848+ (Fucus serratus male)
GGAACATCCACAGGCAATACTGCAAGTCTGCTACATGTTTCGAGTACTAT
TAACACCGTTGTGCTCTATTAGTGAGTACAGTCAGTGGTGAAGCAATACC
ACCATGATATTGTATGACAAAGAGAGCCCTACGATAGCTCTGCAAAAAGA
TACCGTGGTACGTAGTGACTTCGAGCGGGCACTCACAGAGCAGTACAACG
GTTGTACTCGTATGTACGAGCAGCATAAGTTTTGTGCAGTGTCCGCGGTA
AGCATTCTTCATACAGGCTGGGCTGGCCAAGACGCTGTACACATGGCGGA
ATGGGATTTACCACGCGGTTTTTACGAATTTTTACCAGAAATTTTGACAC
GTGATTTAGACCGCTCTTGCGAAGAGGACCACTTCTACACATTTTGGTTT
TAGTTTTTTTTCGTAAGTTATGGTATGATAGCCGGATATAAGTAGATGTG
GGAATAtTTTTTTTAAAGAAAAACATTGTTTCGCGACGAAATTATGGGaA
AAAAAATAAAAATAAAAATGTGCAGGGGTGGTCCTCTCCGCAAGAGCGGT
CTTAATCACACGTGTCACAATTTCAGGTGAAAAATCGTAAAATCCGCGTG
GCAAATCGCGATATCCCCAAACTTCCTCAGTTCACTTGTGTTTTGTATCG
GAATCTTTACGAGGCCGCAACTCTTGATAGAAAACGAGGCGAGCCTTGTA
ACTACCACCTACGCTCTTGCGGTGCTCCTGGGTACGTGTACACCAAATTT
CAGCTTGATCCGTGACACTTTTTTTCATACTGATTTTAGTATAGGAAGTA
TCCTTTACTACGCCGCCAATTGGTCAGTTTACCAAAATCAACTCGGATTC
GAAAAATTCCGGCGCATGCGCTTCCCTTTTTGCCGTATAGGAGCAGCCTC
CAAATTTCAAGCTTTAACTCGTACAAACGGCAGAGCGAGACATGAACGAA
CAGAAGTCAGTTTCTTGGCCAGCCCAGCTTGTAGGAGTACAGTAGTCAGT
AGTTGTACCGAATGATCATGTTCAGAGACGGAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig965:272816..273848+

>mRNA_F-serratus_M_contig965.20975.1 ID=mRNA_F-serratus_M_contig965.20975.1|Name=mRNA_F-serratus_M_contig965.20975.1|organism=Fucus serratus male|type=CDS|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig965:272816..273848+ (Fucus serratus male)
ATGATATTGTATGACAAAGAGAGCCCTACGATAGCTCTGCAAAAAGATAC
CGTGGTACGTAGTGACTTCGAGCGGGCACTCACAGAGCAGTACAACGGTT
GTACTCGTATGTACGAGCAGCATAAGTTTTGTGCAGTGTCCGCGGTAAGC
ATTCTTCATACAGATGATATTGTATGACAAAGAGAGCCCTACGATAGCTC
TGCAAAAAGATACCGTGGTACGTAGTGACTTCGAGCGGGCACTCACAGAG
CAGTACAACGGTTGTACTCGTATGTACGAGCAGCATAAGTTTTGTGCAGT
GTCCGCGGTAAGCATTCTTCATACAGTCAGTAGTTGTACCGAATGATCAG
TAGTTGTACCGAATGA
back to top