mRNA_F-serratus_M_contig962.20960.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig962.20960.1
Unique NamemRNA_F-serratus_M_contig962.20960.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig962.20960.1 vs. uniprot
Match: D8LDL2_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDL2_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 2.990e-70
Identity = 115/149 (77.18%), Postives = 125/149 (83.89%), Query Frame = 1 
Query:  196 VALMAGLRLGRGISTSARALHGHDDEGLEDAPTVEITWQTSKGEEKLTEAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVFDSLPEPSEDEEDMLDLAFGLTETSRLGCQVVVTEEMDGILVKLPPATRNFYVDGHVPQPH 642
            VA +  L   RGIS++ARA HG  +EG E A TV+ITW+   G +K T AKCGMNLMRVAH HGIDLEGACEGVCACSTCHVI+S EVFD LPE SEDEEDMLDLAFGLTETSRLGCQV+VT EMDGI+VKLP ATRNFYVDGHVPQPH
Sbjct:   52 VAALQHLERRRGISSTARACHGDHEEGFEHAQTVQITWENKDGLKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHVIMSNEVFDQLPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVVKLPAATRNFYVDGHVPQPH 199
[Close]
BLAST of mRNA_F-serratus_M_contig962.20960.1 vs. uniprot
Match: A0A836C6V2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6V2_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.240e-55
Identity = 95/139 (68.35%), Postives = 108/139 (77.70%), Query Frame = 1 
Query:  226 RGISTSARALHGHDDEGLEDAPTVEITWQTSKGEEKLTEAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVFDSLPEPSEDEEDMLDLAFGLTETSRLGCQVVVTEEMDGILVKLPPATRNFYVDGHVPQPH 642
            R IS++  A HG + E   +AP V I W+   GE +  +A  GMNLMRVAH H I+LEGACEGVCACSTCHVIL  +++ +LPEPSEDEEDMLD AFGLT TSRLGCQVVVT EMDGI V LP ATRNFYVDGHVP+PH
Sbjct:   47 RCISSTRTARHGDESE-FANAPNVTINWRNKHGEVRTVDAPVGMNLMRVAHKHDIELEGACEGVCACSTCHVILEDDIYAALPEPSEDEEDMLDQAFGLTATSRLGCQVVVTPEMDGITVTLPAATRNFYVDGHVPKPH 184
[Close]
BLAST of mRNA_F-serratus_M_contig962.20960.1 vs. uniprot
Match: A0A6U3SGD3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SGD3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.190e-48
Identity = 85/121 (70.25%), Postives = 99/121 (81.82%), Query Frame = 1 
Query:  289 PTVEITWQTSKGEE---KLTEAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVFDSLPEPSEDEEDMLDLAFGLTETSRLGCQVVVTEEMDGILVKLPPATRNFYVDGHVPQPH 642
            PTV IT+   K  +   K  +A+ G +L++ AH H IDLEGACEGVCACSTCHVILS +VFDSLPE SEDEEDMLD+AFGL+ TSRLGCQV+VT+EM+G+ V LP ATRNFYVDGHVPQPH
Sbjct:   52 PTVNITFHDPKLADTPTKTVKARVGESLLQTAHRHHIDLEGACEGVCACSTCHVILSDDVFDSLPEASEDEEDMLDMAFGLSATSRLGCQVIVTDEMEGMEVNLPAATRNFYVDGHVPQPH 172
[Close]
BLAST of mRNA_F-serratus_M_contig962.20960.1 vs. uniprot
Match: A0A6T5LJJ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5LJJ2_HETAK)

HSP 1 Score: 174 bits (440), Expect = 4.060e-48
Identity = 86/139 (61.87%), Postives = 105/139 (75.54%), Query Frame = 1 
Query:  226 RGISTSARALHGHDDEGLEDAPTVEITWQTSKGEEKLTEAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVFDSLPEPSEDEEDMLDLAFGLTETSRLGCQVVVTEEMDGILVKLPPATRNFYVDGHVPQPH 642
            RGIS+S    HGHDD  +   P V + +++ KG + + +A+ GMN+MRVAHA+ I+LEGACEGV ACSTCHV+L G +FD L   SE+EEDMLD A GLT TSRLGCQV VTE+M+G  + LP  TRNFYVDGHVPQPH
Sbjct:   32 RGISSSFPHFHGHDDHDVATNPLVSLHFKSKKGMQTV-KARVGMNVMRVAHANNIELEGACEGVIACSTCHVVLEGALFDRLAAASEEEEDMLDQAPGLTPTSRLGCQVEVTEDMEGATITLPAITRNFYVDGHVPQPH 169
[Close]
BLAST of mRNA_F-serratus_M_contig962.20960.1 vs. uniprot
Match: A0A4D9D0M2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0M2_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.200e-46
Identity = 79/134 (58.96%), Postives = 103/134 (76.87%), Query Frame = 1 
Query:  241 SARALHGHDDEGLEDAPTVEITWQTSKGEEKLTEAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVFDSLPEPSEDEEDMLDLAFGLTETSRLGCQVVVTEEMDGILVKLPPATRNFYVDGHVPQPH 642
            +AR  HG   + L++AP + + W   KGEE  T+   G +++  AH H ++LEGACEGVCACSTCHVIL   VF+SL +PSE+EEDMLD AFGLT TSRLGCQV ++++M+G+ +KLP ATRNFY+DGHVP+PH
Sbjct:   38 TARVAHGSGKD-LKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMNGLKIKLPSATRNFYIDGHVPKPH 170
[Close]
BLAST of mRNA_F-serratus_M_contig962.20960.1 vs. uniprot
Match: A0A1Z5K9M2_FISSO (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9M2_FISSO)

HSP 1 Score: 164 bits (416), Expect = 7.600e-45
Identity = 74/120 (61.67%), Postives = 97/120 (80.83%), Query Frame = 1 
Query:  283 DAPTVEITWQTSKGEEKLTEAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVFDSLPEPSEDEEDMLDLAFGLTETSRLGCQVVVTEEMDGILVKLPPATRNFYVDGHVPQPH 642
            DAPT+ +T+       K  +A+ G +L++ AH + IDLEGACEGVCACSTCH+I+  +++D LP+PSEDEEDMLD+AFGLT+TSRLGCQV+VT++M+G   K+P ATRNFYVDGH P+PH
Sbjct:   34 DAPTITVTFLQPDKTRKEVQARVGESLLQTAHRNEIDLEGACEGVCACSTCHLIMPQDLYDILPDPSEDEEDMLDMAFGLTDTSRLGCQVIVTKDMEGTEFKMPAATRNFYVDGHKPKPH 153
[Close]
BLAST of mRNA_F-serratus_M_contig962.20960.1 vs. uniprot
Match: W2JPT8_PHYPR (2Fe-2S ferredoxin-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2JPT8_PHYPR)

HSP 1 Score: 164 bits (416), Expect = 8.620e-45
Identity = 86/139 (61.87%), Postives = 98/139 (70.50%), Query Frame = 1 
Query:  226 RGISTSARALHGHDDEGLEDAPTVEITWQTSKGEEKLTEAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVFDSLPEPSEDEEDMLDLAFGLTETSRLGCQVVVTEEMDGILVKLPPATRNFYVDGHVPQPH 642
            R    SA ALHG D     + PTV I ++      K  EAK GM+++ VAHA+ IDLEGACE   ACSTCHVIL   VFD L E  EDEEDMLD+AFGLT+TSRLGCQV VTE+ +G  V LP ATRNFYVDGHVP+PH
Sbjct:   20 RFFHASAAALHG-DMSKFANNPTVHIKFKLRDDSIKEVEAKTGMSILDVAHANDIDLEGACESSMACSTCHVILEDPVFDELEEACEDEEDMLDMAFGLTDTSRLGCQVFVTEDFEGTTVSLPKATRNFYVDGHVPKPH 157
[Close]
BLAST of mRNA_F-serratus_M_contig962.20960.1 vs. uniprot
Match: A0A6G0WB78_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WB78_9STRA)

HSP 1 Score: 164 bits (415), Expect = 9.660e-45
Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 1 
Query:  226 RGISTSARALHGHDDEGLEDAPTVEITWQTSKGEEKLTEAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVFDSLPEPSEDEEDMLDLAFGLTETSRLGCQVVVTEEMDGILVKLPPATRNFYVDGHVPQPH 642
            R +  +A   HG+        P V + ++   G  K+ +A+ G +++ VAH H IDLEGACE   ACSTCHVIL G++FD LPEPSE+EEDMLD+AFGLT TSRLGCQV+VTE+M    V LP ATRNFYVDGHVP+PH
Sbjct:   15 RSVHATAFLQHGNRHAS---GPVVPLKFRLKDGSIKVVDAQIGTSILDVAHRHDIDLEGACESSLACSTCHVILEGDLFDELPEPSEEEEDMLDMAFGLTATSRLGCQVIVTEDMANTTVTLPAATRNFYVDGHVPKPH 150
[Close]
BLAST of mRNA_F-serratus_M_contig962.20960.1 vs. uniprot
Match: A0A7S1GWZ5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GWZ5_HEMAN)

HSP 1 Score: 166 bits (419), Expect = 1.030e-44
Identity = 79/141 (56.03%), Postives = 99/141 (70.21%), Query Frame = 1 
Query:  223 GRGISTSARALHGHDDEGLEDAPTVEITWQTSK-GEEKLTEAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVFDSLPEPSEDEEDMLDLAFGLTETSRLGCQVVVTEEMDGILVKLPPATRNFYVDGHVPQPH 642
            GR   TS    HG         PTV++T+   K G  K  +   GM+++RVAHAH +DLEGACE   ACSTCHV+L  +++D L EP +DE DMLDLAFGLT+TSRLGCQV +TE+M+G + K+P ATRN YVDGHVP+PH
Sbjct:   55 GRSFGTSGVLRHGXXXXXXXXGPTVKVTFLYEKDGSTKTVDGAVGMSVLRVAHAHDVDLEGACEASLACSTCHVVLEQDLYDKLEEPCDDENDMLDLAFGLTDTSRLGCQVFLTEDMEGAVFKIPSATRNMYVDGHVPKPH 195
[Close]
BLAST of mRNA_F-serratus_M_contig962.20960.1 vs. uniprot
Match: A0A225WD15_9STRA (2Fe-2S ferredoxin n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WD15_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.180e-44
Identity = 87/145 (60.00%), Postives = 99/145 (68.28%), Query Frame = 1 
Query:  208 AGLRLGRGISTSARALHGHDDEGLEDAPTVEITWQTSKGEEKLTEAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVFDSLPEPSEDEEDMLDLAFGLTETSRLGCQVVVTEEMDGILVKLPPATRNFYVDGHVPQPH 642
            A +R  R    SA ALHG D       PTV I ++      K  EAK GM+++ VAHA+ IDLEGACE   ACSTCHVIL   VFD L E  EDEEDMLD+AFGLT+TSRLGCQV+V E  +G  V LP ATRNFYVDGHVP+PH
Sbjct:   13 ACIRTPRFFHASASALHG-DMSKFAANPTVHIKFKLRDDSIKEVEAKTGMSILEVAHANDIDLEGACESSMACSTCHVILEEPVFDELEEACEDEEDMLDMAFGLTDTSRLGCQVIVDEGFEGTTVTLPQATRNFYVDGHVPKPH 156
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig962.20960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDL2_ECTSI2.990e-7077.182Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A836C6V2_9STRA2.240e-5568.352Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A6U3SGD3_9STRA3.190e-4870.25Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6T5LJJ2_HETAK4.060e-4861.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D0M2_9STRA1.200e-4658.962Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A1Z5K9M2_FISSO7.600e-4561.672Fe-2S ferredoxin-type domain-containing protein n... [more]
W2JPT8_PHYPR8.620e-4561.872Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A6G0WB78_9STRA9.660e-4557.552Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S1GWZ5_HEMAN1.030e-4456.03Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A225WD15_9STRA3.180e-4460.002Fe-2S ferredoxin n=2 Tax=Phytophthora TaxID=4783 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig962contigF-serratus_M_contig962:249121..258623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.3
Seed ortholog evalue6.4e-60
Seed eggNOG ortholog2880.D8LDL2
Preferred nameFDX1L
KEGG koko:K22071
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006091,GO:0006629,GO:0006694,GO:0006700,GO:0006790,GO:0007553,GO:0007554,GO:0008150,GO:0008152,GO:0008202,GO:0008207,GO:0008610,GO:0009055,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0010566,GO:0010817,GO:0010893,GO:0016043,GO:0016125,GO:0016226,GO:0016491,GO:0019216,GO:0019218,GO:0019222,GO:0022607,GO:0022900,GO:0031163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0032350,GO:0032352,GO:0034754,GO:0042445,GO:0042446,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048037,GO:0048518,GO:0048522,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0051094,GO:0051186,GO:0051239,GO:0051240,GO:0051536,GO:0051537,GO:0051540,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090030,GO:0090031,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:2000026
EggNOG free text desc.2 iron, 2 sulfur cluster binding
EggNOG OGsCOG0633@1,KOG3309@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons7
Model size1617
Cds size609
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932736.2532363-UTR-F-serratus_M_contig962:249120..2500151622932736.2532363-UTR-F-serratus_M_contig962:249120..250015Fucus serratus maleUTRF-serratus_M_contig962 249121..250015 -
1690964448.2132132-UTR-F-serratus_M_contig962:249120..2500151690964448.2132132-UTR-F-serratus_M_contig962:249120..250015Fucus serratus maleUTRF-serratus_M_contig962 249121..250015 -
1622932736.2698448-UTR-F-serratus_M_contig962:250027..2501041622932736.2698448-UTR-F-serratus_M_contig962:250027..250104Fucus serratus maleUTRF-serratus_M_contig962 250028..250104 -
1690964448.2272758-UTR-F-serratus_M_contig962:250027..2501041690964448.2272758-UTR-F-serratus_M_contig962:250027..250104Fucus serratus maleUTRF-serratus_M_contig962 250028..250104 -
1622932736.4894366-UTR-F-serratus_M_contig962:258587..2586231622932736.4894366-UTR-F-serratus_M_contig962:258587..258623Fucus serratus maleUTRF-serratus_M_contig962 258588..258623 -
1690964448.3016417-UTR-F-serratus_M_contig962:258587..2586231690964448.3016417-UTR-F-serratus_M_contig962:258587..258623Fucus serratus maleUTRF-serratus_M_contig962 258588..258623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932736.2837026-CDS-F-serratus_M_contig962:250104..2501671622932736.2837026-CDS-F-serratus_M_contig962:250104..250167Fucus serratus maleCDSF-serratus_M_contig962 250105..250167 -
1690964448.2377865-CDS-F-serratus_M_contig962:250104..2501671690964448.2377865-CDS-F-serratus_M_contig962:250104..250167Fucus serratus maleCDSF-serratus_M_contig962 250105..250167 -
1622932736.299417-CDS-F-serratus_M_contig962:250474..2505261622932736.299417-CDS-F-serratus_M_contig962:250474..250526Fucus serratus maleCDSF-serratus_M_contig962 250475..250526 -
1690964448.247742-CDS-F-serratus_M_contig962:250474..2505261690964448.247742-CDS-F-serratus_M_contig962:250474..250526Fucus serratus maleCDSF-serratus_M_contig962 250475..250526 -
1622932736.3221781-CDS-F-serratus_M_contig962:250833..2509631622932736.3221781-CDS-F-serratus_M_contig962:250833..250963Fucus serratus maleCDSF-serratus_M_contig962 250834..250963 -
1690964448.2665324-CDS-F-serratus_M_contig962:250833..2509631690964448.2665324-CDS-F-serratus_M_contig962:250833..250963Fucus serratus maleCDSF-serratus_M_contig962 250834..250963 -
1622932736.3374753-CDS-F-serratus_M_contig962:251358..2514651622932736.3374753-CDS-F-serratus_M_contig962:251358..251465Fucus serratus maleCDSF-serratus_M_contig962 251359..251465 -
1690964448.2755158-CDS-F-serratus_M_contig962:251358..2514651690964448.2755158-CDS-F-serratus_M_contig962:251358..251465Fucus serratus maleCDSF-serratus_M_contig962 251359..251465 -
1622932736.3565705-CDS-F-serratus_M_contig962:251810..2518531622932736.3565705-CDS-F-serratus_M_contig962:251810..251853Fucus serratus maleCDSF-serratus_M_contig962 251811..251853 -
1690964448.2841918-CDS-F-serratus_M_contig962:251810..2518531690964448.2841918-CDS-F-serratus_M_contig962:251810..251853Fucus serratus maleCDSF-serratus_M_contig962 251811..251853 -
1622932736.3730512-CDS-F-serratus_M_contig962:258373..2585871622932736.3730512-CDS-F-serratus_M_contig962:258373..258587Fucus serratus maleCDSF-serratus_M_contig962 258374..258587 -
1690964448.29246-CDS-F-serratus_M_contig962:258373..2585871690964448.29246-CDS-F-serratus_M_contig962:258373..258587Fucus serratus maleCDSF-serratus_M_contig962 258374..258587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig962.20960.1prot_F-serratus_M_contig962.20960.1Fucus serratus malepolypeptideF-serratus_M_contig962 250105..258587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig962.20960.1

>prot_F-serratus_M_contig962.20960.1 ID=prot_F-serratus_M_contig962.20960.1|Name=mRNA_F-serratus_M_contig962.20960.1|organism=Fucus serratus male|type=polypeptide|length=203bp
MILPLIRTATSYARTSGRRLVGPALRRRRRDASVVPLFADAPEVIASEPN
TMIVALMAGLRLGRGISTSARALHGHDDEGLEDAPTVEITWQTSKGEEKL
TEAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVFDSLPEPSE
DEEDMLDLAFGLTETSRLGCQVVVTEEMDGILVKLPPATRNFYVDGHVPQ
PH*
back to top

mRNA from alignment at F-serratus_M_contig962:249121..258623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig962.20960.1 ID=mRNA_F-serratus_M_contig962.20960.1|Name=mRNA_F-serratus_M_contig962.20960.1|organism=Fucus serratus male|type=mRNA|length=9503bp|location=Sequence derived from alignment at F-serratus_M_contig962:249121..258623- (Fucus serratus male)
CCTACAGCTCGGCGACAGAACGCAAGCAGTGCAACCATGATTCTACCTCT
CATACGAACAGCTACGTCTTACGCTCGAACTTCTGGAAGAAGATTAGTTG
GCCCAGCACTTCGTCGCCGTCGACGAGATGCGTCGGTTGTGCCGCTCTTT
GCTGACGCACCAGAGGTTATTGCATCAGAACCCAACACAATGATCGTTGC
TCTCATGGCGGGATTGCGGCTGGGGCGGGGTATTTCTACTTCTGCAAGAG
GTACCGGACAACATAAGTATGCACATCGAACCGACGCAGTAGCGATTTGT
GCCTCTCGTGCTATCTGATGCTGCCAAACTCTTGCTGTGCCTCGATGGCC
TTATTGAGAATTGAACTCACGCGAACTTACTCTTTTGCGTCATGCGCAAC
TTCAGCTACTGTTGTGTGTACTTCATGTCCAAACCGTAGTGCAACAGTAG
TCACTCTGAGTGACTAATAATAGTAACTGTCACCATGGCAAGATTGAAGC
ACTTCTGTACTGAACTGTTGAAACGAAAAATCTGAACGCATGCACGGTAG
ACCTTCTGCGCATCCCTCAGTCAGGGGGGGGGATGTCAAAACGTTTAGGT
GGGATCATAGGCTGCAAAGACAAAACCTCTTCACATGGCATTTAACCCTT
GGCCTGGACAACTCGCCTTCCGCCAGACTGGACTGTCAGAAAACTCGTTC
CGTTTCGCCATTTTTTTTTACAAAAAAACATCTGATAAGAGAAAAAAAGA
GAGACGAAAAAGTTCACAGAAAAGCAAGTGCAAAGCTAGTCGGTGGCTTT
ACGATCTAGACCCAGGGGGCGTGGCGTCTCTTAGGGTACCAGAAGGGTTG
TGGAGTGGCAAAAAAAACTGGAACGCGCCTAGACCTTCTGAGCATCCCCG
AGTCAGGGGGGCAAAATGTCAAAACGTTCAGGTGGGAACATAGGCTGCAA
ACACAAAACCTCATGGCATTTAAACGTGTTCCCCGATGGTATTAATAGTA
ACATTGGGTCAACAGACAGTATAATATCGGGGAGAAACCCACCGTTATAT
TGTACACTTACATTAATCGTCATGCAGGGACACCAGAAAAACTTCAACAA
ACAGAACCATTTCCGGTGTGCTGTCTGATTATATGGTGGTGGTGGTGCTG
TGTTGAGTGTGTGTGCATGCCACAGGGCTTTCGGAAGGTGCAAGTTATGG
CGACCGCCCTCGACCCACGGTGCAAGATGCTGTACGGCGTTCTACCCAAC
GAGCACGAGGGGGTGTGGCAGGCGGTGGCCATGGCGGCCGCGGACATTGC
CAAGAGCACACAGGCATCCGTCCGGATGACGGCATTGTCAGCGGCTGGAT
CAACGCCAGCGGCTGGATCAACGCCAGCGGCTGGATCAACGCCAGCTGGA
TCTGGGTCTGGGGCATCTGCCTGTCCCGCTAGCAAACGATTTTGCGGCGG
CTTCATGGCGGCTTACCAGGCGCAGGCAGCGTCAGCTTCCACGGTCACCG
CCGCGCCGTCGCTGCCGGTTGAGCACTTCCTGAATGAAGCAGGGAGGGAG
GTTACAAGGTATCGGGTGGCTAGCGGGTTGGCGATGGAAGAGGCACAGGA
GAGCGGCAAGATCCTCTACCCCGACCCGCTGGATTGGTGGCGGATAAACG
CCGTCAAATTCCCGCTGCTAGCGGCGCTTGCCCGGCGCCTTTTGGCCATA
CCGGCATCGCAGGCGCAGTCGGAGCGCGTGTTCTCGAGCGCTGGGCAGAT
TGTCACCCAAACGCGCAACCGCCTGTCATCGGAAAAGGTCGAGCTTCTGG
TGGCATTGAAGAACATTTGGAGTGTGGTGGAGGAATGGCAGCAGTCGAAG
GCGACCCCTGTGTGATGCGTGATTGATTGCTGCAGACTAGGGGGAGAATT
TGTATGTTGTGTTAGCTTCATTTGCTGCCGTGTGTGTTGCTGTTGCTGCA
AGTGCAGGACCGTACGTGAACGTAAGAGTACTTTTAATCTAATGAAGAGG
CCCACATATATTGCTCATTGTTACTTCTGTTGGTGGTTTCGTCAACGGAA
ACACGCAGTAGCATTTCATCGTCTGTTGGCATTGTCTAAAGGCAATATTT
TCCGATCAATATTAACTAACCAATCGAATAAGAAATTAACACCGGTGTTG
CTGTCGATGGAACCCCTATTCCACTATTCGGTAGTCAATATTGTTGCCCG
ATTTTGAAGGGAAATGAAGCCAAATGGCGTGATTTTTTGCCTCCGGCGGC
GCCTCCAGCGAGGCCCCTCACCAGCCGGGGGCCGTTTTTTGCTCCGCCGC
CTCGCTTCGCTCGGCTGCCGATATATCGAGGAAATATCGGCATATCGGCT
GCGCCGAATTGACGATATATATAGTATCGATGCTGAGCACCGATACACAA
CCCTAAAAATCATTGTATTATAGTACATACCACAACCAAAAGCATCCAAA
AATAATGTAGCACGTAATTATATAGATTGTTATACTATGTTATCTACATG
TATTCAGTACGTGTTTGTATTTCACTCTCATGTTAGATTTGTAACAACCA
GATGATTGTCATAGTGTTGGACAGTTATTAGTAGTGGTACATATGATTTG
GTTTAAAGATTGACAAGAGGACACGGGACTGTGATGTAGATATCTTCAAA
TCCAGAAAGTGCAATACCCCGTTATTCACCCAAAAGTAGACGAAGAGCAG
TGGAAGATCACACAAGGAAGTCAGAGGCAAGCCCAGTGGATATGGTCCCC
ACGTGCGATATCAGGTCTACGGCTCCCAGATACTCCTCATGCACAAAAAG
CAAGCCACGGTCCACGCGTTTAGACCGGAAACAAAATACTGTAACGGACG
AGTATCTGCTATTAATAGCCAACGAATGACACGCATGCGCTATGCCTCGA
ACGAGCTTACATGAAATCCTCCATAAAGATTCAGCTTCAAAGAAGCCATT
CGCCACTCGATAAACTTCATCCAGACAAGTAGACCGGATGTTCTTCGTAT
ACAGCAGTATATTCTCAGCCAAACGGAGTCCTTGTTGATGAGTCGTTGTC
GGTGTCGTGTCGTAGTTGTCTTGAGGAAGTTGCCCGGATGCCGTAGGCAA
GAAATTAATGTGCCTTGTTTCTAAACTTGTTTCTAAATGTTTTATTTCGT
GCTGTCGGCGACAGAGATTGTTAGGTGTTCAGTCTTGATCTCCCATGCAT
GCCATTACTCTATTTTCAACATATTCCCAAATGATCGGTCCAGCTGGTTC
AAACGATCAGTGAGCGCGCTTTGAAGGCCCAAAGGGACAGATATCACTTC
TGTACTCACTCCTCTGTCCCCGCCCAACGTGAGTCCTTCAGGCTCGCTAG
CGCGTCTTCTCTCATGCACAATATATTTAAACACGAACACGGACTTGCCA
ACACCCGACGTCGAGGGTTACAAGGGTGACGACACCTCGACTTGCTACCA
GCGGCTGCTGCAGGTCACCCGGGTCTGTGTGGTCTGTACCATGTACAGTT
ACACATAAAGCCAAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGT
TCGTGGTTAGCTGGACAAGAAAAATGAAAATTCCCCTGTCCCCGTGCGAT
CCTGAGAATTTGGTTTCGCGAGACGGAATCAGCCGTCCCGTCCCGCGTCA
GCCTGCTCATGTCCATACTCAGGGTGAATCTGGTGCTTACTTACAGGATT
CCTCCCGAGTTCCGCAGCGGCGTCCATTTATTTATTTAAAACCGGCATAA
GCCATCAGGCCAGCCCCGAGTTTATCGGGTCAAGCAATTGCGTACCGATG
GTGTTCGCTACCGAGAGTCCGCCGGCACGGGGCCAGTAAATTTCAAGGTA
GTTCCAGTAACGGGGGCTACCTTGGCAGGTCACCATGGACCGATTAATAT
GCGCCCCTCTTTCCTACACCCACGATTGGTATGAAGTGGGCACGTTGAAA
GTACATGCATATGCTTGTGTGATTCCTGTGTCAAGACTCTAGGGTGTTGA
ATCATTTTGGGGTCTTACTTCATGGCAACAAGTCAACAAATTTCGCAACC
AAGTACGGTTATATTTATGTCTGCATCGCATTCGAGCCGCATCCAAACGA
GAAGCTTCGGTTGTTCTCTATGCAAGCAGGCAAAGGCACCAGGTCATGTA
TCGTATAGACTGCTGTAGAGCGAGCGCTGCGCCCCACGCTTCCGGTAGCA
TAGCGCAAATAAATCTGATTGGTTCCTCTCCCACAAGGTGCTGCACGGGT
CCAATATTTACACGTTACTACCACAGGTTCAAGTACAACAACACGAGTTT
GCCACGCATGTGTTTAGAGCAAGTATCTGCTGTGTGATTCAGTTTGGCAC
GCCAGACGATTTTGGGGGGAACATAACCGTGTTATAGCAGTCGGATTATT
TACACGTAGTCGTAGGATCGTTGGATGGGGTCAGCACGTGTTCGTTTTTC
GAATACTGGTAGCACCCGTAAATTACTGATGTGTGTGCCTCTTCGCGCTA
CGGTGCTATACTATAAGCTATATAATATAAGAAAGTGATCTATGGTGCTG
TACAACTCCTTGCAGGTGGAGTTCGGGTTCTTTTCTTATCATCCCCTACA
CGACTAGACGGAACTGGACGGAAAAAAAACAAACGATCAGTCGAAATTAT
CAGTGAAACCCACCCGTAGTCGCATAAGGGTTAATCGGGTTCCCCGATGA
TAGTAACATTGGGTCGACAAGACAGTATCATGTCGGGGAGAAACCCATCG
TTATAGACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCAGGA
CGGGACTGTCGAACCTGTTTTGCGAGACCAAATTCTCAGGCGCGAACAGA
GACAGGGAAAAATTCGTTTAGGAGGATTGGCAACCTTACTCGATTGATCG
TTACCCTTGCTATATTTCGATGACCATACATACATATATAAATACATACA
TACTGTACACTTACATTAATTGTCATATAACATATATAACATGCAGGGAC
ACCAAACAAAACAAAGATAGGGCACACCGTGAGCTTGGACCACAGCTCAA
TTTGTTACATTGAGGCTAGGGTCGGATGGGTATTGATGAAGATAATGGAA
AATTATCCAATAAATATTCCTACGGCTGTTGACATCTCTCAAGGAAGGCT
GAACTCCCATCCTTCGCGATAGAAACTGCGGGACTTACCCCTTACTCAAA
TCGGTGGACACACTGCCGCTCATTCTCCACAATCAGGTTCAATCTTGTGC
TTACTCACAGGTTCGTCAGGGTAGTGCAGGAAGCGAATCGACCTGACAGA
ACAGCTTTTTGCAACGTTGACTAATAGATGCGCACATTATTTTACTATTA
GTTTGGTCCATGGTGGTCCATGGTAATTAATACCTGAAAAGGCAACACTC
GTTCGAAACTACCTTGAGGACTACTGGCCCTGTGCCGGCGTACTCTCGGC
AGTGAACGCCATCGGTACGGAATTGGGTGACCTGAGAAACTCGGGACTGA
CCCGATGGCGGATGGTGACATAAATAAATGGATGCCGCCGCGGAAACCGG
GAGGAATCCCGTGAGTAAGCACCAGATGCAGCCTGAGTGTGGAGAATGAG
CAGGCTGGCGCGGGACGGGACAGGCGAAGCCGTCTCACGAAACCAACTTC
TCAGGCACGAACAGGGACGATATCCATGATCCCTGTTCAGCTGACCACGA
GCAAGATTGGCAACCTTACCCGGTCGATCCATACTCTGCTATAAGTGATG
ACCATACATACACACATACACACATAATAACTATCACACCACCAAGCTGC
GACGGGCGATTCCCCACTTAAGAATACACCTCAAGTCGTCAACTCTGATG
CCCTGTGTTGTTTTTCATGCACTCGCTCTAAGTGGTTCTTGTTGAGTTGT
GGCTCATGGTGAAGTTACGAGGGTGAGGTTTATAGATCGGACGCACAAAC
CGTATAACCGTCGTAAATAGATAGGGAAACCGATGCGAGAGCGTTCAGCT
GATTGAAAAATTCTGAACTCTTTCACACCATCAGAGGAAATTGTGTCCAA
GCATTTGGTTGGGAACATCGGCTGTTATAGTTAGCACAGAAACCCTACCT
GGATTCAGCAGGGTTAGTTTTCCGATGATAGTCTCACAAGATCAACAGAC
AGTATATAACGTCGGAGAGAAACCCACCGTTACACTGTACACTTACACTT
ACCGTCATGTAGGAATACTTACACTTACCGCCATGTAGGAACACTTACAC
TTACCGCCATGTAGGAACACCAAAACACCAACACAAGGAAAAACACAAGC
TGTATCGGCCCCATCTGTGATAAAGATACTAATAATATTAAGTTGGACGA
CCTGTACGATACGAGCTATCAACAGTTTAATACTCTAATAGACTAAAGTA
TGAAGAATTATTTCTGGATCATATACTCGTAGCAGATCCAGCTTGCCGGT
CAAGCCTGAAACTCGCGATCTCCTCCCAAAAGACTGGGTCCCGATTCCGG
ACAATGACGTCTTGATCTAGGGGGAGCTTCAAGCCAACGTACGCGACCCT
TGAAAAGAACCGCTGTTTCATCCATTCTTGAGTAACGCAGCTAGCACTGT
AGCAAATCGTATCACTCGTTGACATGAGCTCGATGCGAACTTTGACACTT
GCTGGGGTTGCATTGACCGCCCCCCCCGTGCACCGATTCCACCCTGCATT
CTCCCGCCTCGACACATGGAAAACTGGCGTTCGTGCGACTGCTCGGCGTG
ACGCAACCCTTGTCCTTCAGCTCTGCACGGACATGATGACGAGGGCCTGG
AGGACGCGCCGACGTGCGTAAGCTTGGGTGACGTTTAACCCCTCAGAAGT
AAGAGCGCGATAATGCTCCGCTCTGCTGCAACCGGCTCTCTGGTATCGCT
TCGATCTACTGCTGTAGTAACACGCACACACGTGTCTCATGGGGAAGGCA
CTTGGCCTATTTTACCTATCGCCTGCCGTCCCGAACCATCGCACCCAACG
ATGTCGGCGCGAAGCGCAGAATGTTCAGCCTTGCCGCAGTCTTGCCGTCG
CGACGGACGGATCTAACCCAACCTTACACCCCTCTCCGCAATGTGTTGCT
ACTCTCCTGGGCATGCGTCGTTGTTCGGGAAACTGGGTTTGCCTTTCACC
ATAATCAGGGTGGAGATTACTTGGCAAACATCCAAAGGCGAGGAGAAACT
GACCGAGGCGAAGTGCGGCATGAATCTCATGCGGGTGGCGCATGCGCACG
GGATCGACTTGGAGGGTGAGCCGTCGCCTCTACGCCCTTCTCCTCTGTGC
AACTAATGTACAATATAGACTTGCGTTTGTTTCTTTCATATACATAATCT
ACCGTGCTTCCTATGCACTGGACGAGCGCTCCAGGGGTTGTCTTCAAAGG
AGCACTGTATATTTCGATGGCCGAGTTTTTTTATCCTCAAACTGAAATGT
AGGGAGAGCACCGACACGCCCTACCGCGAGCAAATGTCGGCGCTCGGGGA
ACAAATTTCTGGCCAGTGAAATGTCTTACCCATAGACTAGAGAGCGCGAA
AACGTAGCCTTGTCTGAATGTTGGACACCGGTAGCACGCGGTGAAATTTT
CGAACGATTCTTGACGTGGGACGCGACGTGCTTGTGTGGGATCTTCGACA
ACACCCCCAGGTGCCTGCGAAGGCGTTTGCGCGTGTTCGACATGCCACGT
GATTTTGTCTGGGGAGGTGTTCGACAGCCTGCCGGAGCCAAGCGAGGACG
AGGAGGACATGCTCGACCTTGCCTTCGGCTTGACCGAAACGTGAGCAGGC
CAGGGGCTCTGGTTACAATAGTAAACATATGATATAGTAGAACCTGATGA
AGGGCGAGCGAATCAATTGCATGTACAGTACAAAAACTGTGAGATCTGTC
CTTCCGGGACGCCCCTTCTGCTCCGCTTTCATTATCCGCTAGACGATTTC
ATTGGTCGCGGGGTCACGCAGGGGTGGCATCGACTGTGGAGAGCCCACGC
TTGTTGAGACCCAAGCACCGAAGCATCGATATTTTGCATGATCCCCCCCT
GAAGCACGTTTTCATCACCTCACCACCATCATTTTCTCGTGCGCCAGATC
GCGACTGGGCTGTCAAGTCGTTGTCACCGAGGAAATGGACGGCATCTTGG
TGAGTCATTTCTAGAGTCAGAATGACCTGGTGTATGTGTCCGTGGGCGAT
GGTCCGGCTTCGAATAATTACCCTGCTGTGGTCTTAAAGCTCCTTTTGAG
CGATCGAGTGTCCGATGAGGCCGTGAACCTACCCGCGTAACCTCGGTGGT
GCCGACCTTGACTTATCTCCTGTAACATAAGGCCCTCAACGGCGACAAAC
GCGCAAACTGATAATTGAAAGCAAACCGAACTCTGGACCGTTCCTCTGGG
GATCTCGAGGAGTTTATAACTATTTTTTTTCCCTTGGGCGCTTCCCTGTC
GTGCAGGTGAAACTACCTCCCGCGACCAGAAACTTTTATGTGGACGGCCA
CGTGCCACAACCACACTGAGCAAATCCTGCTCGAGACTGGTTTTAATAGC
AACAAGGAAGGCATTTCTGTGGCGATGGTTTAAGATGTAGACGGGGGTAG
ACGGGTAGGCGCTTTAGTGCTATTATAGTGCTTCTTGAGAGGATACGTGG
AAGATATTTGAAGCGCGTGTATTCGTGCAGGTCCTTCGCGCTTCATAGAT
CGGAACGAAGCCGTCGACTTCAGCGTTTTGGTGGTGGGAAACCGGGCGGG
AATGTAAATCAACCCCTATCTTGATGACCACCCATCTTCCTCTCGACAGT
TCAGGAAGCACCGCCACCGAAAATATCTCGACATCCAAATCCTCAGCGGT
CGATGTTGCTGCGGGCTTTACGTGACTGAACTGAAACCCCATCGCCGGCG
GTCGTAGACAGTAAGGCAATGGTCTACCACACGAGGTCAACGATTGGATA
ACGGGTGATGGGTTCACCCCTTCATGACTCGGGTACAGGTTTATCTAGAT
TCTGAGAGATTTTAGGTGGCGAAGCGAGCGATAAAGTTATTGTCGTCATT
GCGCAGAGGGCGCAAAGCGTGTTTTTCTGCGCGAAGAACCGGACAGCTTC
GGACGAAAACCCCATTTCAAACGGTGTTTGCTTGATCTCTGGTAAATTGA
ACTTGCCGAACGATGGAAGCTTTGAAACATAGTATTGCGCGACGTTGCAC
TACCTAGACGATATTCTATTATCCCCCACTTGGCAATTCTGCGGTTGGCG
TGTCAAGCCATTCAAGACACGCCCTACTTGCGCGAAGTGGCATCGCACCG
ATTCACGCGTGAGTGGGAACACAGAGCGTGGTTTTTAGTTCCCGGGTTCA
CCACGCCATCCGTGACACAGACTGCATTTCGTCAGCATACCGTGAAATGA
TCCACCTTGGTTGAGCTACGGTGTTCCAACAGGATGCGCCATGGGACACC
GATTCTCATTTTTATTTTCTATTCGCTCCAATGCCACGCGCATTTCCGAG
AGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig962:249121..258623-

>mRNA_F-serratus_M_contig962.20960.1 ID=mRNA_F-serratus_M_contig962.20960.1|Name=mRNA_F-serratus_M_contig962.20960.1|organism=Fucus serratus male|type=CDS|length=1218bp|location=Sequence derived from alignment at F-serratus_M_contig962:249121..258623- (Fucus serratus male)
ATGATTCTACCTCTCATACGAACAGCTACGTCTTACGCTCGAACTTCTGG
AAGAAGATTAGTTGGCCCAGCACTTCGTCGCCGTCGACGAGATGCGTCGG
TTGTGCCGCTCTTTGCTGACGCACCAGAGGTTATTGCATCAGAACCCAAC
ACAATGATCGTTGCTCTCATGGCGGGATTGCGGCTGGGGCGGGGTATTTC
TACTTCTGCAAGAGATGATTCTACCTCTCATACGAACAGCTACGTCTTAC
GCTCGAACTTCTGGAAGAAGATTAGTTGGCCCAGCACTTCGTCGCCGTCG
ACGAGATGCGTCGGTTGTGCCGCTCTTTGCTGACGCACCAGAGGTTATTG
CATCAGAACCCAACACAATGATCGTTGCTCTCATGGCGGGATTGCGGCTG
GGGCGGGGTATTTCTACTTCTGCAAGAGCTCTGCACGGACATGATGACGA
GGGCCTGGAGGACGCGCCGACCTCTGCACGGACATGATGACGAGGGCCTG
GAGGACGCGCCGACGGTGGAGATTACTTGGCAAACATCCAAAGGCGAGGA
GAAACTGACCGAGGCGAAGTGCGGCATGAATCTCATGCGGGTGGCGCATG
CGCACGGGATCGACTTGGAGGGGTGGAGATTACTTGGCAAACATCCAAAG
GCGAGGAGAAACTGACCGAGGCGAAGTGCGGCATGAATCTCATGCGGGTG
GCGCATGCGCACGGGATCGACTTGGAGGGTGCCTGCGAAGGCGTTTGCGC
GTGTTCGACATGCCACGTGATTTTGTCTGGGGAGGTGTTCGACAGCCTGC
CGGAGCCAAGCGAGGACGAGGAGGACATGCTCGACCTTGCCTTCGGCTTG
ACCGAAACGTGCCTGCGAAGGCGTTTGCGCGTGTTCGACATGCCACGTGA
TTTTGTCTGGGGAGGTGTTCGACAGCCTGCCGGAGCCAAGCGAGGACGAG
GAGGACATGCTCGACCTTGCCTTCGGCTTGACCGAAACATCGCGACTGGG
CTGTCAAGTCGTTGTCACCGAGGAAATGGACGGCATCTTGATCGCGACTG
GGCTGTCAAGTCGTTGTCACCGAGGAAATGGACGGCATCTTGGTGAAACT
ACCTCCCGCGACCAGAAACTTTTATGTGGACGGCCACGTGCCACAACCAC
ACTGAGTGAAACTACCTCCCGCGACCAGAAACTTTTATGTGGACGGCCAC
GTGCCACAACCACACTGA
back to top