mRNA_F-serratus_M_contig962.20956.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig962.20956.1 vs. uniprot
Match: D8LDJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ8_ECTSI) HSP 1 Score: 659 bits (1700), Expect = 1.500e-216 Identity = 382/754 (50.66%), Postives = 463/754 (61.41%), Query Frame = 3
Query: 330 IRKLSSDDKAKLKTNSIENDSVGWIRKSLFKKAMEWPRELYLNVLGCKALLPPARGSGRKTLTETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDQSTEQVPEEESDGVE-------LRVRSE---ESGGSYDSSLDSADGAGGLEE---------GNGDAGGM-----ECFVLVRNATTGRDLKTQGIRGGSNPVFRESLVVPCQGPRDAIVLGVYYKMAGDHPALLGETALPLDTRVIGASHPVVLSVKDANGHNRGFLRVETFWMDEAKPRKERGEFYYRVVHRSGVRLRNHPSMSAEKALHVMEYGEVFLASERQWLVGDEE-----STTFVKLCTSRDRWARSGWCFETLYHGSGEKKVVLERVSPPRREVGKFFYRVCHVDGTKLHSRPDLKSKLIDHLVPEGRVLEANEKVTPAGSSVTFVAVENKRGYIIHRCDEKGVVNTAVEPVLEQVECPEGVVVSSAGLPDVDLPQPTRPPGASAPKAKNPRAVGLISAAESKAAAQ------------------------------ALRRLYRVRGGVEGLGGVRTPDIDAPMVDDMKEGSFFYSKAEVVKRYDGIGDVAFVMRELDGLWVRANRPGGKVLLDCFTNRVEAGAFTYRVSHENGVLVRTAPGLEAPPVKPKRILPVSKLINVCERLTRAEDIMALSRPPTFLRLAGNDGWVFDRRGHTLVCEDVTVKSRNATVKAIAAEAAQLAL 2414
+R++S DDKAKLK SIENDS GW++K LFKK + WPRELYLNVLGCKAL+P + LT TA + + L SE ESG SS+ DGA +E+ N + G + ECFV +RNATTGRDL+T+ + GG+N F E+ VVPCQGPRDA+VL V++ G+ +G+ ALPLD RV+G SHPV+LSVKD G NRGFLRVETFW+DEAKPRKE GEFYY+VVH GV LRN P +++++HV+ GEVF+A ERQW VG E S FVKL TS+DRW RSGWCFETL + G VLER SPP RE G++F+RVC+ +G +LH + D KS+L L+PEG+VLEA K TPAGS VTFV V N RG++I R EK V+N E E+VECP+ V+SS G+P+ PT +S +A + + +A SK ++RRLYRVR V G+ +TPDI AP D ++ G FY KAEVVK Y+GIGDVAFVMRE DGLWVRANRPG ++LD FTN E GA+TYRV HENGV+VRTAPGL+APPVKP+RILPV+KL+NV ERLTRAEDIM LSRPP FLRLAGNDGWVFDRRGHTLVCEDVTVKSR AT AI +EAA+L+L
Sbjct: 2 VRRISMDDKAKLKAFSIENDSAGWLKKKLFKKEVTWPRELYLNVLGCKALVPQSAVGEGGPLTATASVTTDGENGDAAGTAAAGVILAGVGGDIDARVNPERATPPPGGALGAAGGVVVATPGTADGTVXXXXXXXXXXXXXXGLDTESEGGIESGDEATSSV--GDGAEPVEDVNELMSALSSNMEGGEVKEVKGECFVRIRNATTGRDLQTETVSGGANIGFHETFVVPCQGPRDAVVLEVFFG-EGEKAVAIGDAALPLDARVVGVSHPVLLSVKDKQGRNRGFLRVETFWLDEAKPRKEVGEFYYKVVHPCGVHLRNQPCTGSDRSVHVLGCGEVFVACERQWHVGGEPVDGDCSPVFVKLMTSKDRWNRSGWCFETLCNSGGVSVPVLERASPPLRESGRYFFRVCNPEGARLHRKGDTKSRLRKELLPEGQVLEAGNKWTPAGSPVTFVTVVNGRGFVIQRRGEKTVMNATGEAAFEEVECPKSTVLSSVGVPEHTAEPPT---SSSTVEAADATSADGTAATASKGXXXXXXXXXXXXXXXXDSKVDXXXXXXXXXXXXSVRRLYRVREEV-GVEATKTPDIVAPAADRIEVGVAFYGKAEVVKHYEGIGDVAFVMRETDGLWVRANRPGVALMLDVFTNVHEFGAYTYRVCHENGVVVRTAPGLDAPPVKPRRILPVTKLVNVSERLTRAEDIMNLSRPPIFLRLAGNDGWVFDRRGHTLVCEDVTVKSRIATANAITSEAARLSL 748
BLAST of mRNA_F-serratus_M_contig962.20956.1 vs. uniprot
Match: A0A6H5LA98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA98_9PHAE) HSP 1 Score: 504 bits (1298), Expect = 2.880e-158 Identity = 316/698 (45.27%), Postives = 382/698 (54.73%), Query Frame = 3
Query: 348 DDKAKLKTNSIENDSVGWIRKSLFKKAMEWPRELYLNVLGCKALLPPARGSGRKTLTETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDQSTEQVPEEESDGVELRVRSEESGGSYDSSLDSA----DGAGGLEEGN-------GDAGGME-------CFVLVRNATTGRDL-----KTQGIRGGSNPVFRESLVVPCQGPRDAIVLGVYYKMAGDHPALLGETA----------------LPLDTRVIGASHPVVLSVKDANGHNRGFLRVETFWMDEAKPRKERGEFYYRVVHRSGVRLRNHPSMSAEKALHVMEYGEVFLASERQWLVGDEE-----STTFVKLCTSRDRWARSGWCFETLYHGSGEKKVVLERVSPPRREVGKFFYRVCHVDGTKLHSRPDLKSKLIDHLVPEGRVLEANEKVTPAGSSVTFVAVENKRGYIIHRCDEK------------GVVNTAVEPVLEQVECPEGVVVSSAGLPDVDLPQPT---------------------------RPPGASAPKAKNPRAVGLISAAESKAAAQALRRLYRVR--GGVEGLGGVRTPDIDAPMVDDMKEGSFFYSKAEVVKRYDGIGDVAFVMRELDGLWVRANRPGGKVLLDCFTNRVEAGAFTYRVSHENGVLVRTAPGLEAPPVK 2186
DDKAKLK SIENDS GW++K LFKK + WPRELYLNVLGCKAL+P + LT TA D + + +S G +S ++ DGA +E+ N + G E CFV VRNATTGRDL KT+ + GG+N F E+ VVPCQGPRDA+VL V++ G+ +G D RV+G SHPV+LSVKD G NRGFLRVETFW+DEAKPRKE GEFYY+VVH GV LRN P +++++HV+E GEVF+A ERQW VG E S FVKL TS+DRW RSGWCFETL +G G VLER SPP RE G++F+RV + +G +LH + D KS L L+PEG+VLEA K TPAGS VTFV V N RG+II R EK V N A E E+VECP+ +VSS G+P+ PT R G+S+P V + A ++RRLYRVR GVE +TPDI AP D ++ G+ FY KAEVVK Y+GIGDVAFVMRE DGLWVRANRPG ++LD FTN E GA+TYRVSHENGV+VRTAPGL+AP VK
Sbjct: 2 DDKAKLKAFSIENDSAGWLKKKLFKKEVTWPRELYLNVLGCKALVPQSAVGEDGPLTATASVTTDGENGDVAGTAAGAGVVLSGVGGDMDAKANPEPATPPPAGEVVVASPGT-ADGTVNRXXXXXXXXXXXXXXDTDSEGGMESGDEATSTLGDGAEPVEDVNELMSAVSSNVEGAEVKDVKGVCFVRVRNATTGRDLQRHVLKTETVSGGANIEFHETFVVPCQGPRDAVVLEVFFG-EGEKAVAIGMRGQSSNDYGMHDXXXXXXXXXDARVVGVSHPVLLSVKDKQGRNRGFLRVETFWLDEAKPRKEVGEFYYKVVHPCGVHLRNQPCTGSDRSVHVLECGEVFVACERQWHVGGEPVDGDCSPVFVKLMTSKDRWNRSGWCFETLCNGGGVSVPVLERASPPLRESGRYFFRVRNPEGARLHRKGDTKSTLRKELLPEGQVLEAGNKWTPAGSPVTFVTVVNGRGFIIQRRGEKVDVARRMTETAKTVTNAAGEAAFEEVECPKSTIVSSVGVPEHTAEPPTFSSTVEGADATAADGIAATASTGDGRCRRSGSSSPSKTRDSKVDKVKAXXXXXXXXSVRRLYRVREEAGVEAT---KTPDIVAPAADCIEAGTAFYGKAEVVKHYEGIGDVAFVMRETDGLWVRANRPGVALMLDVFTNVHEFGAYTYRVSHENGVVVRTAPGLDAPAVK 694
BLAST of mRNA_F-serratus_M_contig962.20956.1 vs. uniprot
Match: A0A6V1NIE9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NIE9_HETAK) HSP 1 Score: 169 bits (427), Expect = 2.480e-39 Identity = 149/528 (28.22%), Postives = 225/528 (42.61%), Query Frame = 3
Query: 837 GGMECFVLVRNATTGRDLKTQGIRGGSNPVFRESLVVPCQGPRDAIVLGVY-YKMAGDHPALLGETALPLDTRVIGASHPVVLSVKDANGHNRGFLRVETFWMDEAKPRKERGEFYYRVVHRSGVRLRNHPSMSAEKALHVMEYGEVFLASERQWLVGDEESTTFVKLCTSRDRWARSGWCFETLYH-----GSGEKKVVLERVSPPRREVGKFFYRVCHVDGTKLHSRPDLKSKLIDHLVPEGRVLEANEKVTPAGSSVTFVAVENKR----------GYIIHRCDEKGVVNTAVEPVLEQVEC--PEGVVVSSAGLPDVDLPQPTRPPGASAPKAKNPRAVGLISAAESKAAAQALRRLYRVRGGVEGLGGVRTPDIDAPMVDDMKEGSFFYSKAEVVKRYDGIG---DVAFVMRELDGL--WVRANRPGGKVLLDCFTNRVEAGAFTYRVSHENGVLVRTAPGLEAPPVKPKRILPVSKLINVCERLTRAEDIMALSRPPTFLRLAGNDGWVFDRRGHTLVCEDV 2351
G + +V++ N +T + KT+ I P + E++ V RD IVL V+ Y G +G + LPLD R I ++ V L + D NRG LRV W DEA P +E G F+Y+VV GV +R+ P + ++ GE+F A+ER L +E+TT+V+L RD+W R GW FE L G E+ VLERV+PP+ +VG FFY+V ++ +L P+L G+VLE K P GS F V+ + G+II V + E ++ C P+G + A L + Q PG RL RG T ++DA + G FF V Y + +V ++ R G WVR + G + + + + G + Y++ E GV VR + R+L + + + R+ A+D S+ GW+FD H + +V
Sbjct: 185 GWCDPYVIMTNISTRQKEKTEIIYDNPEPTWEENMAVTIASARDTIVLEVFDYDRVGQDD-YIGASILPLDARFI-SNREVALEITDKKKKNRGTLRVSAMWADEATPTREHGRFFYKVVFAHGVHIRSKPDAHSRNTGQTLQPGEIFEAAER--LKPLDENTTYVRLNMLRDKWMRKGWVFENLLMRDDRTGEIEEVRVLERVNPPKSDVGPFFYQV--LEDVQLPVYPELNCTTKTAPYRAGQVLECMAKTMPLGSEYQFARVDVVQHGTATNAEGGGWIIEDAQGGLVPLSNFETTIKVQHCQPPKGQRRAGAELQRTQVYQVVAEPGV-------------------------YTRLASGRGD--------TVELDAGKGPMLATGDFFECDRSVTMFYPNLAGEPEVTWLHRLEQGADDWVRLEK-NGITICEPVDDEIHGGQWIYKIVFEGGVTVRRYAKEHGE--RTDRVLQCGEEVPIKMRIQHAKDKKKKSKTWYLEIDDAEGGWIFDHNNHHEIAVEV 670 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig962.20956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig962.20956.1 >prot_F-serratus_M_contig962.20956.1 ID=prot_F-serratus_M_contig962.20956.1|Name=mRNA_F-serratus_M_contig962.20956.1|organism=Fucus serratus male|type=polypeptide|length=745bp MLLHQAQETDLKGLPDCGDGNGVVPGFPTEGPREFGTSSSSANSPVRIRKback to top mRNA from alignment at F-serratus_M_contig962:146182..175839- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig962.20956.1 ID=mRNA_F-serratus_M_contig962.20956.1|Name=mRNA_F-serratus_M_contig962.20956.1|organism=Fucus serratus male|type=mRNA|length=29658bp|location=Sequence derived from alignment at F-serratus_M_contig962:146182..175839- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig962:146182..175839- >mRNA_F-serratus_M_contig962.20956.1 ID=mRNA_F-serratus_M_contig962.20956.1|Name=mRNA_F-serratus_M_contig962.20956.1|organism=Fucus serratus male|type=CDS|length=4470bp|location=Sequence derived from alignment at F-serratus_M_contig962:146182..175839- (Fucus serratus male)back to top |