mRNA_F-serratus_M_contig960.20939.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig960.20939.1
Unique NamemRNA_F-serratus_M_contig960.20939.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig960.20939.1 vs. uniprot
Match: D7G589_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G589_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.790e-33
Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = 1 
Query:    4 DGPPHRFNNHLPYSDRIPEENKRLVGDITGALGAFNANKDDIQLLLRACSGLERLRELKYSLDDATCFEIAQSLHDIAFPPS-EPVPLPWRCGNKVISALGKLIGKKQYQLVLVGKLILPWRPM 372
            DG  HRFN  LPY +R+P EN+ L+ +I  AL +F A   D++ +L+ACSGL R+R LKY++DD +   IAQSL+ + FP   E  PLPW+C NKV+ ALG L+G+KQ +L L G+L+LPWRPM
Sbjct:    7 DGVVHRFNAELPYKERLPAENEHLLSEIKEALTSF-AVHGDVRRVLQACSGLTRMRRLKYAVDDTSRLLIAQSLYGLVFPAEGERKPLPWQCSNKVMYALGSLLGQKQGRLSLAGRLVLPWRPM 129
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig960.20939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G589_ECTSI1.790e-3353.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig960contigF-serratus_M_contig960:276671..277042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue6.1e-29
Seed eggNOG ortholog2880.D7G589
Preferred nameBLM3
KEGG koko:K06699
KEGG Pathwayko03050,map03050
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005839,GO:0006508,GO:0006807,GO:0006810,GO:0006913,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009987,GO:0010498,GO:0010499,GO:0010604,GO:0010952,GO:0016020,GO:0016021,GO:0016043,GO:0016504,GO:0019222,GO:0019538,GO:0022607,GO:0030162,GO:0030163,GO:0030234,GO:0031224,GO:0031323,GO:0031325,GO:0031329,GO:0031503,GO:0031597,GO:0032268,GO:0032270,GO:0032991,GO:0034515,GO:0034622,GO:0042176,GO:0042393,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044445,GO:0044464,GO:0044877,GO:0045862,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051235,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0052547,GO:0060255,GO:0061134,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070577,GO:0070628,GO:0071704,GO:0071840,GO:0080090,GO:0098544,GO:0098545,GO:0098772,GO:0140030,GO:0140033,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903050,GO:1903362,GO:1905368,GO:1905369,GO:1990236,GO:1990237
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsKOG1851@1,KOG1851@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051
Exons1
Model size373
Cds size372
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932732.5593584-CDS-F-serratus_M_contig960:276670..2770421622932732.5593584-CDS-F-serratus_M_contig960:276670..277042Fucus serratus maleCDSF-serratus_M_contig960 276671..277042 +
1690964446.3014953-CDS-F-serratus_M_contig960:276670..2770421690964446.3014953-CDS-F-serratus_M_contig960:276670..277042Fucus serratus maleCDSF-serratus_M_contig960 276671..277042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig960.20939.1prot_F-serratus_M_contig960.20939.1Fucus serratus malepolypeptideF-serratus_M_contig960 276671..277042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig960.20939.1

>prot_F-serratus_M_contig960.20939.1 ID=prot_F-serratus_M_contig960.20939.1|Name=mRNA_F-serratus_M_contig960.20939.1|organism=Fucus serratus male|type=polypeptide|length=124bp
MDGPPHRFNNHLPYSDRIPEENKRLVGDITGALGAFNANKDDIQLLLRAC
SGLERLRELKYSLDDATCFEIAQSLHDIAFPPSEPVPLPWRCGNKVISAL
GKLIGKKQYQLVLVGKLILPWRPM
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mRNA from alignment at F-serratus_M_contig960:276671..277042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig960.20939.1 ID=mRNA_F-serratus_M_contig960.20939.1|Name=mRNA_F-serratus_M_contig960.20939.1|organism=Fucus serratus male|type=mRNA|length=372bp|location=Sequence derived from alignment at F-serratus_M_contig960:276671..277042+ (Fucus serratus male)
ATGGACGGCCCCCCTCATCGCTTCAACAACCACCTCCCTTACAGCGACCG
CATACCAGAAGAGAACAAGCGACTTGTGGGTGACATTACCGGAGCACTTG
GTGCCTTCAACGCCAATAAGGATGACATTCAACTGTTGCTACGAGCTTGT
TCCGGTCTCGAACGTTTGCGAGAACTGAAGTACAGCCTCGATGACGCCAC
GTGCTTCGAGATCGCTCAGTCGCTGCATGATATCGCTTTTCCTCCTTCGG
AGCCTGTGCCACTGCCGTGGCGATGCGGCAACAAGGTTATATCCGCGCTC
GGAAAGCTCATCGGCAAGAAGCAATACCAGCTGGTGTTAGTAGGGAAGCT
AATTCTGCCGTGGCGTCCGATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig960:276671..277042+

>mRNA_F-serratus_M_contig960.20939.1 ID=mRNA_F-serratus_M_contig960.20939.1|Name=mRNA_F-serratus_M_contig960.20939.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig960:276671..277042+ (Fucus serratus male)
ATGGACGGCCCCCCTCATCGCTTCAACAACCACCTCCCTTACAGCGACCG
CATACCAGAAGAGAACAAGCGACTTGTGGGTGACATTACCGGAGCACTTG
GTGCCTTCAACGCCAATAAGGATGACATTCAACTGTTGCTACGAGCTTGT
TCCGGTCTCGAACGTTTGCGAGAACTGAAGTACAGCCTCGATGACGCCAC
GTGCTTCGAGATCGCTCAGTCGCTGCATGATATCGCTTTTCCTCCTTCGG
AGCCTGTGCCACTGCCGTGGCGATGCGGCAACAAGGTTATATCCGCGCTC
GGAAAGCTCATCGGCAAGAAGCAATACCAGCTGGTGTTAGTAGGGAAGCT
AATTCTGCCGTGGCGTCCGATGATGGACGGCCCCCCTCATCGCTTCAACA
ACCACCTCCCTTACAGCGACCGCATACCAGAAGAGAACAAGCGACTTGTG
GGTGACATTACCGGAGCACTTGGTGCCTTCAACGCCAATAAGGATGACAT
TCAACTGTTGCTACGAGCTTGTTCCGGTCTCGAACGTTTGCGAGAACTGA
AGTACAGCCTCGATGACGCCACGTGCTTCGAGATCGCTCAGTCGCTGCAT
GATATCGCTTTTCCTCCTTCGGAGCCTGTGCCACTGCCGTGGCGATGCGG
CAACAAGGTTATATCCGCGCTCGGAAAGCTCATCGGCAAGAAGCAATACC
AGCTGGTGTTAGTAGGGAAGCTAATTCTGCCGTGGCGTCCGATG
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