mRNA_F-serratus_M_contig960.20931.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig960.20931.1 vs. uniprot
Match: D7G599_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G599_ECTSI) HSP 1 Score: 736 bits (1899), Expect = 2.850e-239 Identity = 446/914 (48.80%), Postives = 568/914 (62.14%), Query Frame = 2
Query: 1124 VFCPSDSFTGEKPGYVFKLGDQGLGFYINGYADTPKNAERIIVIRRPWNAGPGDKAIRRGPLGPVHKPFKNIKKLR---DRNVNEADDTRQFMARMVAQRNSRAFQNTLLGRQHELDMRILALLENIFDPAFFKKKHGYNVHGEMLGKDGKMIVKIKAMKTEEEKAKLSWYRKIYEDRLGEHLPTKRLGDSIEARREAYAYSRHFTTQLNDRQDDLNRSLTETLKGQTRLDFIMEDYHYPGAYDTDGLLIREKGTKRSNELDQNDEQKDRAYSYRFQALQRYRAAHDDIVEAISKKDKALQGMFRKTDPMILGEIADEAVQSSGIGIYRQKTRSGPGD-DAKRKISCVNVTAESTSQLRKKFAAVLEAEIKNKDKALMKEVAAMENEQAVQMIDEFAQGVQVLPSSWRQDPRNLKHMQRRRNELIAQIAADQNKAVSPWRPAGLHIAHEPWRTFIPRNRQLHVCSGSVEKS-----SVDPRDAGNEGQR---VMRQIDGK--LERQAHTVSTHRRDNFIGTIIARAERILAAHTPGTALHTAFSIYSNYPFSPDHRGRLYRNSGSTRRCLTARGCSQARVLGSCSGTIFQSPGNSCDEQNRRASAKLSESPTCGDILPAYRAKNTTRPHSAIDNKSSRMPPPERRPSTASGTNSPACANTFDSISKTEGMEYNSVLSAPRGKNHDRKNSSG--SRSFYVRSGPGVTVRWARCCGSSSDVVYKNSTWPSTPRAPSASRPTRRRARP----SASPVTDEHEHKKPGSTRWE---GFEKREVLKDRSGISSRKDARIASGNAEAETSLEDLEKSLLATTCRRVDQRKHVFSAYRKRSRRAKIWDPCSAFYAEDPCMPVAGR-SPTTGR---GKVGAPENALHQTRTSAELCSCEKRRGWSYTPLDADPPMDMDWKQV 3784
VF S FTG K GYVFK GD+GLGFY++GY D +R + RPWNAGPG++A +RGPLGP KPFK I R ++ E +DTR FMARMVAQRNSR FQ+ L R+ LD IL LLE DPAFFKKKHGYNVHG+MLGKDGKMIVK+ KTEEEKA+L WYRK+YEDRLG+HLP+KRLGDSIEARREAYAYSRHFT +++ RQD+LNR+LT+ LKGQT+L+FI EDYHYPGAY+TDG +I EKG SNEL + D Q +RA +YR++A++RYRAAH DI AI+KKDKALQ + +KTDP IL EI++EAV S+G+GIYRQ R+G + A + S V AE QLR+KFA L+A+IK KDKAL+KE+AA+E ++A QM+ +F +G +VLP+SWRQDP LK M+RRR ELIA+ AAD+ K V PWRP G HIA EPW+ FIPR+ + V S S K+ S+ A EG+R + + +GK ER+ T HRR F+ I RA RILAA PGT LH+ FS YSN PF + R R S R +A + T+FQ+ G +RA A++S SPT L R RP SA S + P RRP+TA GT P S + ++V SA + + H++ + S SR +V++GPGVTV WAR C SSD+VYK S WP A +ASR TR R +P + +PV E + G W+ G +G S ++ G + LED+E SL A++ +RV+ RK VF Y RSRR + WDP S FYAE R SP TGR ++G + + T+ +KR + D P+DMDW++V
Sbjct: 177 VFVSSSCFTGAKDGYVFKTGDKGLGFYVDGYVDRQARRKRSLS-HRPWNAGPGEQATKRGPLGPAPKPFKKIVPYRTQKEKRAAEENDTRPFMARMVAQRNSRGFQSNLFERERVLDKHILYLLEKFSDPAFFKKKHGYNVHGQMLGKDGKMIVKVTPEKTEEEKARLPWYRKVYEDRLGKHLPSKRLGDSIEARREAYAYSRHFTAEIDGRQDELNRALTKALKGQTKLEFITEDYHYPGAYNTDGKVILEKGAPVSNELHRTDAQNERACTYRYKAIRRYRAAHSDIASAIAKKDKALQKVLKKTDPAILVEISEEAVTSTGMGIYRQTKRAGGRNGSATGESSAVLQPAERPEQLRQKFAHSLKAQIKGKDKALLKEIAALEEDEAEQMMGDFGKGTEVLPNSWRQDPEGLKRMERRRKELIAENAADRRKVVCPWRPGGKHIAQEPWKPFIPRDHRPPVRSASEGKAETHGGSLGATSAAQEGRRGVPIHEKGNGKKGAERRPRTAPAHRRKGFMDAISPRARRILAAQAPGTPLHSVFSTYSNDPFPLETRQRPSAQSTPARTEYSANRPWPTPTTEPRTDTLFQTSGRVGLGTQQRAWAEISCSPTSSQTL---RGDFVARPRSAAAEISKNLQTPPRRPATACGTRVPR-------ESTANAVAASNVSSANQAREHEQGHRSDEQSRDLHVQNGPGVTVLWARLCSPSSDLVYKRSVWPE---ASAASRQTRPRGKPRKTSATAPVNATTEAE--GEHEWDATPGDPSTGPGPIDAGDSGGGKPKLPRGTTDTGGPLEDMENSLYASSSQRVNHRKRVFRGYSDRSRRERTWDPGSEFYAEGASKHSMVRPSPCTGRINGNRIGGKGDPRQEDDTTKRKHRRDKRHQSRISGDDV--PVDMDWEKV 1072
BLAST of mRNA_F-serratus_M_contig960.20931.1 vs. uniprot
Match: A0A6H5JWU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU4_9PHAE) HSP 1 Score: 639 bits (1648), Expect = 1.160e-201 Identity = 418/978 (42.74%), Postives = 545/978 (55.73%), Query Frame = 2
Query: 1121 DVFCPSDSFTGEKPGYVFKLGDQGLGFYINGYADTPKNAERIIVIRRPWNAGPGDKAIRRGPLGPVHKPFKNIKKLR---DRNVNEADDTRQFMARMVAQRNSRAFQNTLLGRQHELDMRILALLENIFDPAFFKKKHGYNVHGEMLGKDGKMIVKIKAMKTEEEKAKLSWYRKIYEDRLGEHLPTKRLGDSIEARREAYAYSRHFTTQLNDRQDDLNRSLTETLKGQTRLDFIMEDYHYPGAYDTDGLLIREKGTKRSNELDQNDEQKDRAYSYRFQALQRYRAAHDDIVEAISKKDKALQGMFRKTDPMILGEIADEAVQSSGIGIYRQKTRSGPGD-DAKRKISCVNVTAESTSQLRKKFAAVLEAEIKNKDKALMKEVAAMENEQAVQMIDEFAQGVQVLPSSWRQDPRNLKHMQRRRNELIAQIAADQNKAVSPWRPAGLHIAHEPWRTFIPRNRQLHVCSGSVEKS-----SVDPRDAGNEGQR---VMRQIDGK--LERQAHTVSTHRRDNFIGTIIARAERILAAHTPGTALHTAFSIYSNYPFSPDHRGRLYRNSGSTRRCLTARGCSQARVLGSCSGTIFQSPGNSCDEQNRRASAKLSESPTCGDILPAYRAKNTTRPHSAIDNKSSRMPPPERRPSTASGTNSPACANTFDSISKTEGMEYNSVLSAPRGKNH--DRKNSSGSRSFYVRSGPGVTVRWARCCGSSSDVVYKNSTWPSTPRAPSASRPTRRRARP----SASPVTD----EHEHKKPGSTRWEGFEKREVLKDRSGISSRKDARIASGNAEAETSLEDLEKSLLATTCRRVDQRKHVFSAYRKRSRRAKIWDPCSAFYAEDPCMPVAGR-SPTTGR---GKVGAPENALHQTRTSAELCSCEKRRGWSYTPLDADPPMDMDWKQVDTDRFSQAAQEMKAALEERLFPAVTSDRSSDGELEECLREAQQIVKSGKRLFQYPGDTRETF 3970
+VF S FTG K GYVFK GD+GLGFY++GY D +R + RPWNAGPG++A +RGPLGP KPFK I R ++ E +DTR FMARMVAQRNSR FQ+ L R+ LD IL LLE DPAFFKKKHGYNVHG+MLGKDGKMIVK+ YE+ E S +A+ GQT+L+FI EDYHYPGAY+TDG +I EKG SNEL + D Q +RA +YR++A++RYRAAH DI AI+KKDKALQ + +KTDP IL EI++EAV S+G+GIYRQ R+G + A S V E QLR+KFA L++++K+KDKAL+KE+AA+E ++ Q++ F +G VLP+SWRQDP L M+RRR ELIA+ AAD+ K V PWRP G HIA EPW+ FIPR+ + V S S K+ S+ A EG+R + + +GK ER+ T HRR F+ I RA RILAA PGT LH+ FS YSN PF + R R S R + S C+ T+FQ+ G +RA ++S SPT L R RPHSA S ++ P RRP+TA GT P S + ++V S + + H D ++ SR +V+SGPGVTV WAR C SSD+VYK S WP AP+ASRPTRRR +P + +PV E EH+ + ++ SG K + G + LED+E SL A++ +RV+ RK +F Y RSRR + WDP S FYAE R SP TGR + G N + T+ +KR + D P+DMDW++VD R ++E++ L+ + F VT D S L EC +EAQ++V+S L P + RE +
Sbjct: 175 EVFISSSCFTGAKDGYVFKTGDKGLGFYVDGYVDRQVRRKRSLS-HRPWNAGPGEEATKRGPLGPAPKPFKKIVPYRTQKEKRAAEENDTRPFMARMVAQRNSRGFQSNLFERERVLDKHILYLLEKFSDPAFFKKKHGYNVHGQMLGKDGKMIVKVS-----------------YEEESME--------PSFPGGAKAW--------------------------GQTKLEFITEDYHYPGAYNTDGKVILEKGAPVSNELHRTDAQNERACTYRYKAIRRYRAAHSDIASAIAKKDKALQKVLKKTDPAILVEISEEAVTSTGLGIYRQTKRAGGRNGSATGASSAVLQPGERPEQLRQKFAHSLKSQMKSKDKALLKEIAALEEDETEQIMGNFGKGAGVLPNSWRQDPEGLNRMERRRKELIAENAADRRKVVCPWRPGGKHIAQEPWKPFIPRDHRPPVRSASEGKAETHGGSLGVSSAAQEGRRSVPIHEKGNGKKEAERRPRTAPAHRRKGFMDAISPRARRILAAQAPGTPLHSVFSTYSNDPFPLETRQRPSAQSTPARTEYSGNRPSPTLTTEPCTDTLFQTSGRIGLGTQQRAWVEISCSPTSSQTL---RGGFVARPHSAAAKISKKLRTPPRRPATACGTRVPR-------ESTDNAVAASNVSSTNQAREHEQDHRSDEQSRDLHVQSGPGVTVLWARLCSPSSDLVYKRSVWPE---APAASRPTRRRGKPRKTSATAPVNGTTVAEGEHEWDATPGDPSTGPGPIVAGSSGGGKPK---LPRGTTDTGGPLEDMENSLYASSSQRVNHRKRIFRGYSDRSRRERTWDPGSEFYAEGASKHSMVRPSPCTGRINWNRRGGRGNPRQEDDTTKRKHRRDKRHQSRISGND--DPVDMDWEKVDIARLINGSKEIEKVLDGKFFAVVTDDESPV-HLGECFQEAQELVESASVLLGCPENERERY 1081
BLAST of mRNA_F-serratus_M_contig960.20931.1 vs. uniprot
Match: A0A835YZN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN9_9STRA) HSP 1 Score: 144 bits (362), Expect = 1.560e-30 Identity = 92/263 (34.98%), Postives = 145/263 (55.13%), Query Frame = 2
Query: 1337 IKKLRDRNVNEADDTRQFMARMVAQRNSRAFQNTLLGRQHELDMRILALLENIFDPAFFK--KKHGYNVHGEMLGKDGKMIVKIKAMKTEEEKAKLSWYRKIYEDRLGEHLPTKRLGDSIEARREAYAYSRHFTTQLNDRQDDLNRSLTETLKGQTRLDFIMEDYHYPGAYDTDGLLIREKGTKRSNELDQNDEQKDRAYSYRFQALQRYRAAHDDIVEAISKKDKALQGMFRKTDPMILGEIADEAVQSSGIGIYRQKTRSG 2119
++K + V+E T F++RMVAQRN+R F TL GR+ +LD ++A L+ + D + + ++ GYN+HG +R+I+E+R+G+ +P LGD+IEARRE + +R FT L+ R+ +L L E L+ R+D + G Y DG +I +G +R L +D+ RA Y ++A QR++AAH+DI AIS K + + RKT+ +L IA++AV SS + +RQK +G
Sbjct: 111 LRKRGETPVDEEASTELFLSRMVAQRNARLFSGTLDGREQQLDSAVIAALDGMTDQEYKRLLQRRGYNIHG---------------------------HRRIFEERVGKLVPRVTLGDAIEARREGLSCARQFTESLDGREAELQAHLEEGLRDVWRMDVVRP--RNVGGYGIDGKIILPEGEERDKRLHLDDKALARATPYVYKATQRFKAAHEDIANAISAKSLEVSKLLRKTNWKLLQSIAEQAVSSS-LAQHRQKRLTG 343 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig960.20931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig960.20931.1 >prot_F-serratus_M_contig960.20931.1 ID=prot_F-serratus_M_contig960.20931.1|Name=mRNA_F-serratus_M_contig960.20931.1|organism=Fucus serratus male|type=polypeptide|length=1487bp MPEEDKNLVLPEIEGEYGPSVLGVGESSSSTGVGSHEIPLASEVEFGTSSback to top mRNA from alignment at F-serratus_M_contig960:72198..84067+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig960.20931.1 ID=mRNA_F-serratus_M_contig960.20931.1|Name=mRNA_F-serratus_M_contig960.20931.1|organism=Fucus serratus male|type=mRNA|length=11870bp|location=Sequence derived from alignment at F-serratus_M_contig960:72198..84067+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig960:72198..84067+ >mRNA_F-serratus_M_contig960.20931.1 ID=mRNA_F-serratus_M_contig960.20931.1|Name=mRNA_F-serratus_M_contig960.20931.1|organism=Fucus serratus male|type=CDS|length=8922bp|location=Sequence derived from alignment at F-serratus_M_contig960:72198..84067+ (Fucus serratus male)back to top |