mRNA_F-serratus_M_contig960.20928.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig960.20928.1
Unique NamemRNA_F-serratus_M_contig960.20928.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig960.20928.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 1.070e-108
Identity = 174/269 (64.68%), Postives = 203/269 (75.46%), Query Frame = 2
Query:    5 PGDLALGTTDSGSDIKWVGTVGLLDTYGVLWDWRPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKVNKSPTLKSKFDDLQLEMVRDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLKQPLSAITRDGQFAGVPMTAEIHMKFGFLKVHVLDPTKGLKVFDTPPIGEVVLDEPGAQKRKLPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPP 811
            P  LA GTTDSGSD+K V T  L   Y VLW W  CHL VKAAEQA+G+  DPAKSKNP AR++L+ V KVVE +NKSP  K+KF+DLQ++M+ ++FK+VKHAPQRWLSLTRT+ER IRLWHVLRKLYSDEG  FPL++G  KD ILQLYSL QPLS+ITRDGQ+   PM A+I MKFG L   VLDP+K LKVF  PPIGE  L + G QK+ LP  MV P+ LH   + TR E+ +ALVSRFYGRVWD  T DP FF  +A LLTPP
Sbjct:  328 PSHLASGTTDSGSDVKAVSTNCLWPMYAVLWCWCFCHLMVKAAEQAYGIHLDPAKSKNPQARDILKKVVKVVENLNKSPNFKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSITRDGQYGDAPMMADIFMKFGMLNTDVLDPSKDLKVFQVPPIGEDGLPDRGQQKKPLPFKMVPPEQLHAAVEKTRVEMRRALVSRFYGRVWDENTLDPPFFCHAACLLTPP 596          
BLAST of mRNA_F-serratus_M_contig960.20928.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 1.610e-105
Identity = 162/269 (60.22%), Postives = 198/269 (73.61%), Query Frame = 2
Query:    5 PGDLALGTTDSGSDIKWVGTVGLLDTYGVLWDWRPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKVNKSPTLKSKFDDLQLEMVRDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLKQPLSAITRDGQFAGVPMTAEIHMKFGFLKVHVLDPTKGLKVFDTPPIGEVVLDEPGAQKRKLPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPP 811
            P DLA GTTDSGSD+K     GL   YGVLW+W  CHL VKAAE  FG   DP KSKNP AR++L++V  +V  +N+S   K+KF+DLQ++++ DV KI   APQRWL+  RTLER+IRLWHVLRKLYSD G  FPL++G NK+ ILQL+SL Q LS++TRDGQ+   PM A++ MKFG LK+ VLDP+K LKVFD PP+G+  L +   QK+ LP  MV PD LHPVAK  R +L +ALVSR YGRVWD  T DPSFF D++ LLTPP
Sbjct:   44 PSDLASGTTDSGSDVKSASVNGLYPQYGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKNVISMVGTLNRSSNFKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSVTRDGQYGNAPMQADVFMKFGELKMEVLDPSKPLKVFDIPPLGQDGLPDREEQKKALPHKMVEPDDLHPVAKKARSKLGRALVSRLYGRVWDHNTLDPSFFCDASCLLTPP 312          
BLAST of mRNA_F-serratus_M_contig960.20928.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 1.320e-101
Identity = 159/269 (59.11%), Postives = 199/269 (73.98%), Query Frame = 2
Query:    5 PGDLALGTTDSGSDIKWVGTVGLLDTYGVLWDWRPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKVNKSPTLKSKFDDLQLEMVRDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLKQPLSAITRDGQFAGVPMTAEIHMKFGFLKVHVLDPTKGLKVFDTPPIGEVVLDEPGAQKRKLPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPP 811
            P DLA GTTDSGSD+K V   GL   YGVLW+W  CHL VKAAE AFG   DP  SKNP AR +L+++  ++  ++KS  L +KF+DLQ++++ +V  I   APQRWL+L RT+ER+IRLW V+RKLYSD G  FPL++G NKD I QLYSL QPLS++TRDGQ+ G+PM A+I+MKFG LK+ VL+ +  LKVFD PP+GE  L +   QK+ LP  MV+ D LHPVA+  R+ELC+ALVSRFYGRVWD    DPS F D+A LLTPP
Sbjct:   76 PSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLKVFDIPPLGEDGLPDREEQKKPLPHKMVAHDELHPVAQKARNELCRALVSRFYGRVWDDSCLDPSMFCDAACLLTPP 343          
BLAST of mRNA_F-serratus_M_contig960.20928.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 2.130e-98
Identity = 157/269 (58.36%), Postives = 197/269 (73.23%), Query Frame = 2
Query:    5 PGDLALGTTDSGSDIKWVGTVGLLDTYGVLWDWRPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKVNKSPTLKSKFDDLQLEMVRDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLKQPLSAITRDGQFAGVPMTAEIHMKFGFLKVHVLDPTKGLKVFDTPPIGEVVLDEPGAQKRKLPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPP 811
            P DLA GTTDSGSD+K V   GL   YGVLW+W  CHL +KAAE AFG   DP KSKNP A  +L+++  +V  ++KS  L +KF+DLQ++++ +V KI   APQRWL+L RT+ER+IRLWHVLRKLYSD G  F L++G NKD I QLYSL Q LS++TRDGQ+ G+PM A+I++KFG LK+ VL+ +  LKVFD PP+GE  L +   QK+ L   MV+ D LHPVA+  RD+LC+ALVSRFYG VWD    DPS F D+A LLTPP
Sbjct:   84 PSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMIKAAEDAFGTHPDPQKSKNPEAHNMLKNLIGIVGTLHKSLNLTAKFEDLQVDLLGEVLKIPNQAPQRWLTLVRTMERVIRLWHVLRKLYSDAGKNFILEEGDNKDCIPQLYSLLQSLSSVTRDGQYGGLPMLADIYIKFGMLKMGVLNSSADLKVFDIPPLGEDGLPDRKEQKKPLRHKMVAHDELHPVAQKARDKLCRALVSRFYGHVWDDSCLDPSMFCDAACLLTPP 352          
BLAST of mRNA_F-serratus_M_contig960.20928.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 1.290e-93
Identity = 151/259 (58.30%), Postives = 191/259 (73.75%), Query Frame = 2
Query:   35 SGSDIKWVGTVGLLDTYGVLWDWRPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKVNKSPTLKSKFDDLQLEMVRDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLKQPLSAITRDGQFAGVPMTAEIHMKFGFLKVHVLDPTKGLKVFDTPPIGEVVLDEPGAQKRKLPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPP 811
            SGSD+K V   GL   YGVLW+W  CHL VKAAE AFG   DP  SKNP AR +L+++  ++  ++KS  L +KF+DLQ++++ +V  I   APQRWL+L RT+ER+IRLW V+RKLYSD G  FPL++G NKD I QLYSL QPLS++TRDGQ+ G+PM A+I+MKFG LK+ VL+ +  LKVFD PP+GE  L +   QK+ LP  MV+ D LHPVA+  R+ELC+ALVSRFYGRVWD    DPS F D+A LLTPP
Sbjct:  215 SGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLKVFDIPPLGEDGLPDREEQKKPLPHKMVAHDELHPVAQKARNELCRALVSRFYGRVWDDSCLDPSMFCDAACLLTPP 472          
BLAST of mRNA_F-serratus_M_contig960.20928.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 5.400e-88
Identity = 158/279 (56.63%), Postives = 189/279 (67.74%), Query Frame = 2
Query:   11 DLALGTTDSGSDIKWVGTVGLLDTYGVLWDWRPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKVNKSPTLKSKFDDLQLEMVRDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLKQPLSAITRDGQFAGVPMTAEIHMKFGFLKVHVLDPTKGLKVFDTPPIGEVVLDEPGAQ-------------KRKLPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTP 808
            DLA GTTDSGSD+K +    LL  +   WDW  CHLA +AAEQAFG SADP K KN  AR +++ V K   KVN+SP  K KFD+ QL+M  +V KI KHAPQRWLSL R +ERIIRLWHVLRK+Y+++G+ FPLD+G NKD ILQLYSL +PL+AITRDGQ+  VPM+AE+HM F  LK   LDPT  LKVFD PP      D P A              K+ LP   V P AL PVA  TR+ L KALV + Y R+WD  + DPS FR+++VLLTP
Sbjct:  313 DLAGGTTDSGSDVKAMCVNFLLAQHKGSWDWCVCHLADRAAEQAFGTSADPQKPKNKDARGVVQLVIKAAAKVNQSPIFKQKFDEAQLQMTGEVLKIRKHAPQRWLSLVRVMERIIRLWHVLRKVYANDGVEFPLDKGDNKDNILQLYSLLRPLAAITRDGQYGAVPMSAEMHMAFAELKQEGLDPTGPLKVFDIPPTP----DSPAALQSDEELPVTVNTGKKPLPHKTVEPAALRPVATKTRELLGKALVEKLYARLWDEESADPSPFRNASVLLTP 587          
BLAST of mRNA_F-serratus_M_contig960.20928.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 1.860e-86
Identity = 148/269 (55.02%), Postives = 183/269 (68.03%), Query Frame = 2
Query:    5 PGDLALGTTDSGSDIKWVGTVGLLDTYGVLWDWRPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKVNKSPTLKSKFDDLQLEMVRDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLKQPLSAITRDGQFAGVPMTAEIHMKFGFLKVHVLDPTKGLKVFDTPPIGEVVLDEPGAQKRKLPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPP 811
            P DLA GTTDSG D+K V   GL   +GVLW+    HL VKAAE  FG   DP KSKNP AR++L+ +  +V  +++S   K+KF DLQ+++  +VF     APQRWL+L  TLER+IRLWHVLRKLYSD G  FPL++G   D ILQL SL QPLS++TRDGQ+ G PM          LK+ VLDP++ LKVFD PP+GE  L +   QK+ LP  MV+ D L PVA+  R+ELC+AL +RFYGRVWD  T DPS   D+A LLTPP
Sbjct:   52 PSDLASGTTDSGLDVKSVSVNGLHPQFGVLWNCCFYHLMVKAAEDGFGTHVDPQKSKNPKARDMLKKLINLVGTLHRSSNFKAKFGDLQVDVWGEVFP--NQAPQRWLTLVPTLERVIRLWHVLRKLYSDTGKTFPLEEGDITDCILQLNSLLQPLSSVTRDGQYGGAPM----------LKMRVLDPSEELKVFDIPPLGEDGLPDRKEQKKALPHHMVAHDYLDPVAQKERNELCRALGTRFYGRVWDTSTLDPSVLCDAACLLTPP 308          
BLAST of mRNA_F-serratus_M_contig960.20928.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.190e-83
Identity = 132/228 (57.89%), Postives = 168/228 (73.68%), Query Frame = 2
Query:   11 DLALGTTDSGSDIKWVGTVGLLDTYGVLWDWRPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKVNKSPTLKSKFDDLQLEMVRDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLKQPLSAITRDGQFAGVPMTAEIHMKFGFLKVHVLDPTKGLKVFDTPPIGEVVLDEPGAQKRKLPTTMVSPDALHPVAK 694
            DLA GT DSGSD+K V   GL   +GVLW+W  CHL VKAAE  FG   DP KSKNP AR++L+ +  +V  +++S   K+KFDDLQ++++ +V KI   AP+RWL+L RTLER+IRLWHVLRKLYSD G  FPL++G NKD ILQLYSL QP S++TRDGQ+ G PM A+I+MK G LK+ VLDP++ LKVFD PP+GE  L +   QK+ LP  +V+ D L PVA+
Sbjct:   97 DLASGTADSGSDVKSVSFNGLHPQFGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKKLINLVGTLHRSSNFKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSVTRDGQYGGAPMLADIYMKCGMLKMRVLDPSEELKVFDIPPLGEDSLPDREEQKKALPHKVVAHDDLRPVAQ 324          
BLAST of mRNA_F-serratus_M_contig960.20928.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 4.100e-83
Identity = 147/269 (54.65%), Postives = 178/269 (66.17%), Query Frame = 2
Query:    5 PGDLALGTTDSGSDIKWVGTVGLLDTYGVLWDWRPCHLAVKAAEQAFGVSADPAKSKNPAARELLRHVTKVVEKVNKSPTLKSKFDDLQLEMVRDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLKQPLSAITRDGQFAGVPMTAEIHMKFGFLKVHVLDPTKGLKVFDTPPIGEVVLDEPGAQKRKLPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPP 811
            P  LA GTTDSGSD+K V   GL   +GVLW+W  CHL +KAAEQ F  S D  KSKNPAAR+LL+ V KVVE +NKS  L +KF+DLQ++++ +VFK+VKHAPQRWL LTRTLERIIRLWH                                PLS+ITRD Q+ G PMTAEI MKF  LK +VLD ++ L+VFD P +GE  L   G QK+ LP+ MVS D LHP     R+ELC+AL+SR Y RVW+  +P+PSFF D+A LLTPP
Sbjct:   39 PSYLASGTTDSGSDVKAVSINGLWKHFGVLWNWCFCHL-MKAAEQPFCTSLDTVKSKNPAARDLLKTVIKVVETLNKSSNLGAKFEDLQVDLLGEVFKVVKHAPQRWLGLTRTLERIIRLWH--------------------------------PLSSITRDVQYGGAPMTAEIFMKFATLKTNVLDMSEPLRVFDIPALGEDGLPNRGEQKKALPSKMVSADQLHPTTTLAREELCRALMSRLYERVWNEQSPNPSFFCDAACLLTPP 274          
BLAST of mRNA_F-serratus_M_contig960.20928.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 1.060e-80
Identity = 132/224 (58.93%), Postives = 169/224 (75.45%), Query Frame = 2
Query:  140 AFGVSADPAKSKNPAARELLRHVTKVVEKVNKSPTLKSKFDDLQLEMVRDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGSNKDGILQLYSLKQPLSAITRDGQFAGVPMTAEIHMKFGFLKVHVLDPTKGLKVFDTPPIGEVVLDEPGAQKRKLPTTMVSPDALHPVAKTTRDELCKALVSRFYGRVWDPLTPDPSFFRDSAVLLTPP 811
            AFGV  DP KSKNP AR++++ V KVVE +NKS  L++KF+DL+ E++ +V K+VKHAPQRWLS+ RT+ERIIRLWH LRKLYSDEG VFPL++G NK+G+LQLYSL +PL  ITRDGQ+ G PM A+I+MK G LK+ +L+  K LKV++TP +GE  L +   Q + LP  MV+   LHP AK  R+ELC+ALV+R +GR W     DPSF  DS+ LLTPP
Sbjct:   28 AFGVHPDPTKSKNPGARDVIKVVIKVVENLNKSSNLRAKFEDLETELLGEVLKVVKHAPQRWLSMVRTMERIIRLWHALRKLYSDEGKVFPLEEGDNKNGVLQLYSLLEPLCMITRDGQYGGAPMMADIYMKMGILKMGMLNLEKELKVYETPRVGENGLPDREEQNKPLPHKMVAHGNLHPAAKKAREELCRALVARLFGRYWAGCV-DPSFV-DSSCLLTPP 249          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig960.20928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE1.070e-10864.68Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEE6_9PHAE1.610e-10560.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ66_9PHAE1.320e-10159.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB08_9PHAE2.130e-9858.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE1.290e-9358.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE5.400e-8856.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT2_9PHAE1.860e-8655.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D8_9PHAE1.190e-8357.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8W6_9PHAE4.100e-8354.65Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KFQ8_9PHAE1.060e-8058.93Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig960contigF-serratus_M_contig960:6255..7185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size931
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig960.20928.1prot_F-serratus_M_contig960.20928.1Fucus serratus malepolypeptideF-serratus_M_contig960 6532..7101 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932729.3990288-UTR-F-serratus_M_contig960:6254..65311622932729.3990288-UTR-F-serratus_M_contig960:6254..6531Fucus serratus maleUTRF-serratus_M_contig960 6255..6531 +
1690964444.636524-UTR-F-serratus_M_contig960:6254..65311690964444.636524-UTR-F-serratus_M_contig960:6254..6531Fucus serratus maleUTRF-serratus_M_contig960 6255..6531 +
1622932729.4247167-UTR-F-serratus_M_contig960:7101..71851622932729.4247167-UTR-F-serratus_M_contig960:7101..7185Fucus serratus maleUTRF-serratus_M_contig960 7102..7185 +
1690964444.6560998-UTR-F-serratus_M_contig960:7101..71851690964444.6560998-UTR-F-serratus_M_contig960:7101..7185Fucus serratus maleUTRF-serratus_M_contig960 7102..7185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932729.411605-CDS-F-serratus_M_contig960:6531..71011622932729.411605-CDS-F-serratus_M_contig960:6531..7101Fucus serratus maleCDSF-serratus_M_contig960 6532..7101 +
1690964444.6466868-CDS-F-serratus_M_contig960:6531..71011690964444.6466868-CDS-F-serratus_M_contig960:6531..7101Fucus serratus maleCDSF-serratus_M_contig960 6532..7101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig960.20928.1

>prot_F-serratus_M_contig960.20928.1 ID=prot_F-serratus_M_contig960.20928.1|Name=mRNA_F-serratus_M_contig960.20928.1|organism=Fucus serratus male|type=polypeptide|length=190bp
MVRDVFKIVKHAPQRWLSLTRTLERIIRLWHVLRKLYSDEGMVFPLDQGS
NKDGILQLYSLKQPLSAITRDGQFAGVPMTAEIHMKFGFLKVHVLDPTKG
LKVFDTPPIGEVVLDEPGAQKRKLPTTMVSPDALHPVAKTTRDELCKALV
SRFYGRVWDPLTPDPSFFRDSAVLLTPPSTGASTSTRSN*
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mRNA from alignment at F-serratus_M_contig960:6255..7185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig960.20928.1 ID=mRNA_F-serratus_M_contig960.20928.1|Name=mRNA_F-serratus_M_contig960.20928.1|organism=Fucus serratus male|type=mRNA|length=931bp|location=Sequence derived from alignment at F-serratus_M_contig960:6255..7185+ (Fucus serratus male)
GACTCCGGGAGACCTCGCCTTGGGCACGACGGACAGCGGATCCGACATCA AGTGGGTCGGCACCGTCGGCCTCTTGGACACCTACGGGGTCTTGTGGGAT TGGCGCCCTTGCCACTTGGCGGTGAAAGCCGCCGAGCAAGCGTTTGGTGT GAGCGCAGACCCTGCCAAGTCTAAAAACCCCGCGGCACGCGAGCTTCTCC GGCATGTCACCAAGGTCGTGGAGAAGGTCAACAAGTCTCCCACCTTGAAA AGCAAGTTCGACGACTTGCAGCTGGAGATGGTGCGCGACGTGTTCAAGAT CGTCAAGCACGCTCCCCAACGGTGGCTCAGCCTGACTCGCACGCTGGAGC GGATCATCCGCTTGTGGCACGTGCTGAGGAAGCTTTACTCGGATGAGGGG ATGGTGTTTCCCCTCGACCAGGGCAGCAACAAGGACGGCATCCTCCAGCT CTACTCGTTGAAGCAGCCCCTTTCTGCGATTACGCGTGATGGCCAATTCG CCGGGGTGCCGATGACGGCGGAGATCCACATGAAGTTTGGATTTCTCAAG GTGCACGTGCTCGACCCGACCAAGGGCCTCAAGGTGTTCGACACCCCCCC CATTGGAGAGGTCGTCCTCGACGAGCCCGGGGCGCAGAAGCGTAAGCTGC CGACCACGATGGTGTCACCAGATGCGCTGCACCCCGTGGCGAAAACCACG CGAGACGAGCTCTGCAAGGCTCTGGTTTCGAGGTTCTACGGGCGTGTGTG GGACCCGTTGACACCTGATCCCTCCTTTTTCCGCGACTCTGCTGTCCTGC TCACGCCCCCTTCAACGGGGGCCAGTACCTCGACGCGCTCAAACTGAGAG AGGAGGATTCCGGATCCCTGCCAGCAAGCTCGCTGGCGTCGGCCCCAACT TCGGAGGCTGACGTGGCCGCGAAGCTCGAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig960:6255..7185+

>mRNA_F-serratus_M_contig960.20928.1 ID=mRNA_F-serratus_M_contig960.20928.1|Name=mRNA_F-serratus_M_contig960.20928.1|organism=Fucus serratus male|type=CDS|length=1140bp|location=Sequence derived from alignment at F-serratus_M_contig960:6255..7185+ (Fucus serratus male)
ATGGTGCGCGACGTGTTCAAGATCGTCAAGCACGCTCCCCAACGGTGGCT
CAGCCTGACTCGCACGCTGGAGCGGATCATCCGCTTGTGGCACGTGCTGA
GGAAGCTTTACTCGGATGAGGGGATGGTGTTTCCCCTCGACCAGGGCAGC
AACAAGGACGGCATCCTCCAGCTCTACTCGTTGAAGCAGCCCCTTTCTGC
GATTACGCGTGATGGCCAATTCGCCGGGGTGCCGATGACGGCGGAGATCC
ACATGAAGTTTGGATTTCTCAAGGTGCACGTGCTCGACCCGACCAAGGGC
CTCAAGGTGTTCGACACCCCCCCCATTGGAGAGGTCGTCCTCGACGAGCC
CGGGGCGCAGAAGCGTAAGCTGCCGACCACGATGGTGTCACCAGATGCGC
TGCACCCCGTGGCGAAAACCACGCGAGACGAGCTCTGCAAGGCTCTGGTT
TCGAGGTTCTACGGGCGTGTGTGGGACCCGTTGACACCTGATCCCTCCTT
TTTCCGCGACTCTGCTGTCCTGCTCACGCCCCCTTCAACGGGGGCCAGTA
CCTCGACGCGCTCAAACTGAATGGTGCGCGACGTGTTCAAGATCGTCAAG
CACGCTCCCCAACGGTGGCTCAGCCTGACTCGCACGCTGGAGCGGATCAT
CCGCTTGTGGCACGTGCTGAGGAAGCTTTACTCGGATGAGGGGATGGTGT
TTCCCCTCGACCAGGGCAGCAACAAGGACGGCATCCTCCAGCTCTACTCG
TTGAAGCAGCCCCTTTCTGCGATTACGCGTGATGGCCAATTCGCCGGGGT
GCCGATGACGGCGGAGATCCACATGAAGTTTGGATTTCTCAAGGTGCACG
TGCTCGACCCGACCAAGGGCCTCAAGGTGTTCGACACCCCCCCCATTGGA
GAGGTCGTCCTCGACGAGCCCGGGGCGCAGAAGCGTAAGCTGCCGACCAC
GATGGTGTCACCAGATGCGCTGCACCCCGTGGCGAAAACCACGCGAGACG
AGCTCTGCAAGGCTCTGGTTTCGAGGTTCTACGGGCGTGTGTGGGACCCG
TTGACACCTGATCCCTCCTTTTTCCGCGACTCTGCTGTCCTGCTCACGCC
CCCTTCAACGGGGGCCAGTACCTCGACGCGCTCAAACTGA
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