mRNA_F-serratus_M_contig96.20927.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig96.20927.1 vs. uniprot
Match: A0A6H5JB63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB63_9PHAE) HSP 1 Score: 440 bits (1132), Expect = 3.140e-133 Identity = 358/853 (41.97%), Postives = 452/853 (52.99%), Query Frame = 3
Query: 78 MMDPEETEVEELASVPSSFFENSTSPVTGLGGWASGAGNALFAVTKGVSSRVEDVSFRMSARAKGMLSSVGDDDGGDNGRTH--------------------------------NAVANGENTGPTVDEAEAERLASVLAQSAQLAEKVVAMNKMANVLGSDTGKASQNVLRSAAVPLVTVLREAEHFDPFFANACITCMLQISEAQGEPFEKELVKAGAAEALIPLLHPRFELIRIQGLGLLGSLLAAER-EVCSRVVGVPTGMQXXXXXXXXXXXXXXXXXXXXXXXXXXGDPDTPPPVDLQNFVAFQEGFEKLFNAAS--EPPEQVSLRALDALRGALVRNPLSQKLFVSGGHLARLPPLLFPIDPATEEMSNASSAQGLPPQQXXXXXXXXXXXRRQWGWG---------GRGKDITLEVSSRGGLDGDVYGDEDLVAPPSPASSXXXXXXXXXXXXRQAVPVGRVRTRENEAPVARIQATLLLLSALVG-------------------GDGEGSRGGDPDGASKAV---DSIRGSVGMEGGLMEAVCELALASSRAPATGGPTWAEYGILEGCQRLATNVLAAMISSHPDNQVLFARCSTRGAPIAVTLHGRKRLMYAFETRSAVDSLLELWLAASLDASEARN--------------RHPEDGQTDAFAEVESLDKVMDAFLVGNKAWCVAALEAVSSMHAS---------------------SASRVLDRRDSSGG-----GVTGAGLLSLIVRRGLLEPGSPARSMPSTDGRRSEGRRRGVGTEKEEQEHQDVNEPTAAALSLSLLRRVLQAGGPNARALAAGIGIAT------EGAERREEARA 2300
MM+P++ + EEL +VPS F++ SPV+ LG WA+GA KGVSSRVE VS RMS RAK MLSSV DD NG + N +A+ P VDEAE RL + + + QLAEK+VAMNK++NVLG G+ASQ+ L S A LV +LR+AE+FDPFFANACI C Q+ EAQGE F E+V AGAA+AL+PLL P+FELIRI+GL L +LL AER +VCS++VGVPTGMQ PPPV+LQNFVAF++GF+KLF AA E SL+AL A+ GAL NPLS+KLF++GGHL RLP LL + P + + +PP XXXXXXX RR+WGWG RG+ XXXXXXXXXXXX A + P+ RI+A L L+SALVG GD +G G AS A + + +VG E GL+EAVCELALAS APA GGPTW+EYG+ CQR A VLA +++ HP NQ +RC RGAP++VTLHG+K+L+ + E R+ VD+LLELWLAAS + D + +A AEV LD+ +DAFL GN WC + L V++ HAS SASR D + G V G ++S + + GLL + + P + R E G G E ++P AAAL L LLRRVLQAGG +ARA+AA +G+ T G ER E+RA
Sbjct: 1 MMNPDDGDSEELEAVPSDMFDSGPSPVSALG-WATGA-------FKGVSSRVEGVSSRMSLRAKDMLSSVADDHDNYNGSSSPHSNGSASGAARSNGTLGLFNNGSSSSASGILNGIADEVPAVPAVDEAEVSRLVASMDSTTQLAEKMVAMNKLSNVLGDGAGQASQSALCSVAEVLVALLRDAEYFDPFFANACIACAQQLLEAQGEAFAAEMVNAGAAQALLPLLDPKFELIRIEGLACLEALLVAERAKVCSQIVGVPTGMQALVDLLDDRWDEVRHQTVSLLAAFLTEQGGVPPPVNLQNFVAFEDGFDKLFKAADAGEISGDFSLKALAAVSGALTDNPLSRKLFLAGGHLPRLPALLSILRPG-----DVAEHPLVPPXXXXXXXXXS---RRRWGWGRDKAQEPSVARGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGDVEEGGWSGQVPIPRIRAALSLVSALVGCGRQVGVTVSEEAPMVAAAGDKQGLSAGLGATASTAAVAGNEVLSAVGREEGLLEAVCELALASPLAPAGGGPTWSEYGLPADCQRSAMEVLAVLVARHPANQSCLSRCQVRGAPMSVTLHGQKQLVSS-EPRNVVDALLELWLAASSAMEDGATAAAXXXXXXXXXXXETAADNEINATAEVALLDRTLDAFLYGNTEWCKSVLAGVAAKHASAARIGDASQSVPPPASTGNPSSASRGNDHVPVANGTSKEQDVGGVAVMSTVAKIGLLCVRASSAGAPRSS-TRGETEADGGGGE---------DDPLAAALRLRLLRRVLQAGGADARAIAASVGLPTGAAAVRRGGERARESRA 826
BLAST of mRNA_F-serratus_M_contig96.20927.1 vs. uniprot
Match: D8LC54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC54_ECTSI) HSP 1 Score: 313 bits (802), Expect = 3.960e-89 Identity = 267/714 (37.39%), Postives = 342/714 (47.90%), Query Frame = 3
Query: 1401 LLLLSALVGGDGEGSRGGDPDGASKAV---DSIRGSVGMEGGLMEAVCELALASSRAPATGGPTWAEYGILEGCQRLATNVLAAMISSHPDNQVLFARCSTRGAPIAVTLHGRKRLMYAFETRSAVDSLLELWLAASLDASEARNRHPEDGQTDAFAEVESLDKVMDAFLVGNKAWCVAALEAVSSMHASSASRVLDRRDSSGGGVTG--------------------------AGLLSLIVRRGLLEPGSPARSMPSTDGRRSEGRRRGVGTEKEEQEHQDVNEPTAAALSLSLLRRVLQAGGPNARALAAGIGIATEGAE-RREEARARMNSEMSSTQGRLGDDGHDDLYLDDSGAPIVHGRGREEAFSEDGKESESWGFGGGVGRIENGGRIRCAPPLTPALEVAMRLLANGHNVVVMLQRGGIDAGNDEASSPPTDLVRYLISLAELLVAWLS---PPGPGPALSRRLLASGANWALLRTLGRALRPASVCVXXXXXNGGPAAR---TMLSSSSSATTANRISADSEAYFAYLHSLVAVIVGSFLSSAEALTRQTLSAGVAKHVGLFRFCRALDSATDWVAFVEPT--------PGGSGGGRKHNVPVSWALSGDAAFTVGMVAIVQAAQTSMIEKIA-GVPGREAYPGAVAPPGSA---PASDLATAKQAANGHADGGYDCDCEDNESLYEELLHRQQLRIEELERRLL 3398
+ +A GGD G G AS A D + +VG E GL+EAVCELALAS APA GGPTW+EYG+ CQR A VLA +++ HP NQV LD+ +DAFL GN WC + L V++ HAS+A R SS TG ++S + + GLL + + + P + + E G G E ++P AAAL L LLRRVLQAGG +ARA+AA +G+ T A RR RAR +SE S GR G + + + DG GG GR R+RC PPLTPALEVAMRLLA+G+ V Q G ++A +E SPP+DL YLISL EL++ WLS G GPALSRRLLASG++W LLRT GRA RP NG +S++ AT+A+ + +YLH++VA++VGSF+SS L + L+AG+ ++VGLF FCR LDSA+DW+AF P PGGS G VP WAL+GD+ F+ +V I+Q AQ +MI+ I G EA G+ P S L AN DGG + +E LL RQQ RIEELERRLL
Sbjct: 1 MAAAAAAAGGDKYGLSAGVGATASTAAAAGDEVLSAVGREEGLLEAVCELALASPLAPAGGGPTWSEYGLPADCQRSAMEVLAVLVARHPANQVAL-----------------------------------------------------------------LDRTLDAFLSGNTEWCKSVLAGVAAKHASAARLEDASRSSSPPASTGNPSSVPRSNDHVSVANGTSKERDVGGVAVMSTVAKIGLLCVRASSAAAPQSS-KPGETEANGGGGE---------DDPLAAALRLRLLRRVLQAGGADARAIAASVGLPTGAAAVRRGGERARESSEGESN-GREEPSGVEGPIEEQQRGGXXXXXXXXXXXASDGNGE------GGSGR-----RVRCGPPLTPALEVAMRLLADGYKCAVTRQTGVLEAEGEERRSPPSDLTHYLISLGELVLTWLSLAPAEGVGPALSRRLLASGSSWTLLRTFGRAFRPDLARRDVPPGNGDHIEEGHDAAAASAADATSADGRRLSDDPSLSYLHAVVAMVVGSFVSSGSNLASRALAAGIERYVGLFEFCRILDSASDWIAFAWPATAMHTPTHPGGSMAGEMR-VPSFWALAGDSTFSSRLVEIIQTAQMTMIDLIIKGGSESEATRRNTTDQGAEEGXPPSSLRDQGGGAN-TVDGG-------SREAFEALLRRQQARIEELERRLL 618
BLAST of mRNA_F-serratus_M_contig96.20927.1 vs. uniprot
Match: D8LC55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC55_ECTSI) HSP 1 Score: 206 bits (525), Expect = 1.150e-55 Identity = 135/269 (50.19%), Postives = 169/269 (62.83%), Query Frame = 3
Query: 78 MMDPEETEVEELASVPSSFFENSTSPVTGLGGWASGAGNALFAVTKGVSSRVEDVSFRMSARAKGMLSSVGDDDGGDN--------------GRTHNAVA---NGENTGPT------------------VDEAEAERLASVLAQSAQLAEKVVAMNKMANVLGSDTGKASQNVLRSAAVPLVTVLREAEHFDPFFANACITCMLQISEAQGEPFEKELVKAGAAEALIPLLHPRFELIRIQGLGLLGSLLAAER-EVCSRVVGVPTGMQ 776
MM+P++ + EEL +VPS F++ S V+ LG WA+GA KGVSSRVE VS RMS RAK MLSSV DD +N R++ + NG ++ + DEAE RL + + + QLAEK+VAMNK++NVLG D G+ASQ L S A LV +LR+AE FDPFFANACI C Q+ EAQGE F E+V AGAA+ALIPLL P+FELIRI+GL L +LL AER +VCS++VGVPTGMQ
Sbjct: 1 MMNPDDGDSEELEAVPSDMFDSGPSSVSALG-WATGA-------FKGVSSRVEGVSSRMSLRAKDMLSSVADDHDNNNVSSSPHSNGSAAGAARSNGTLGLFNNGNSSSASGILNGIADEVPAXXXXXXXDEAEVSRLVASMDSTTQLAEKMVAMNKLSNVLGDDAGQASQMALCSVAEALVAMLRDAEFFDPFFANACIACAQQLLEAQGEAFAAEMVNAGAAQALIPLLDPKFELIRIEGLACLEALLVAERAKVCSQIVGVPTGMQ 261
BLAST of mRNA_F-serratus_M_contig96.20927.1 vs. uniprot
Match: A0A6H5JC49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC49_9PHAE) HSP 1 Score: 189 bits (479), Expect = 1.940e-49 Identity = 132/312 (42.31%), Postives = 177/312 (56.73%), Query Frame = 3
Query: 2535 MRLLANGHNVVVMLQRGGIDAGNDEASSPPTDLVRYLISLAELLVAWLS---PPGPGPALSRRLLASGANWALLRTLGRALRP---------ASVCVXXXXXNGGPAARTMLSSSSSATTANRISADSEAYFAYLHSLVAVIVGSFLSSAEALTRQTLSAGVAKHVGLFRFCRALDSATDWVAFVEPT--------PGGSGGGRKHNVPVSWALSGDAAFTVGMVAIVQAAQTSMIEKIA-GVPGREAYPGAVAPPGSAPASDLATAKQAANGH--ADGGYDCDCEDNESLYEELLHRQQLRIEELERRLLP 3401
MRLLA+G+ V Q G ++A DE SPP+DL YL+SL EL++ WLS G GPALSRRLLASG++W LLRT GRA RP + N G A S+++AT+A+ + +YLH++VA++VGSF+SS L + L+AG+ ++VGLF FCR LDSA+DW+AF P PGGS G VP WAL+GD+ F+ +V ++Q AQ +MI+ I G E A G+ ++ ++ G DGG + +E LL RQQ RIEELERRLLP
Sbjct: 1 MRLLADGYKCAVTRQTGVLEAEGDERLSPPSDLTHYLVSLGELVLTWLSLSPAEGVGPALSRRLLASGSSWMLLRTFGRAFRPDLARRDIPPGNAEQIEEGHNAGAA------SAAAATSADGRRLSDDPSLSYLHAVVAMVVGSFVSSGSNLASRALAAGIERYVGLFEFCRILDSASDWIAFAWPATATHTPTHPGGSVAGEMR-VPSFWALAGDSTFSSRLVKMIQTAQMTMIDLIIKGDSESETTRRNTADQGAEEGVPPSSHREQGGGANTVDGG-------SRGAFEALLRRQQARIEELERRLLP 298 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig96.20927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig96.20927.1 >prot_F-serratus_M_contig96.20927.1 ID=prot_F-serratus_M_contig96.20927.1|Name=mRNA_F-serratus_M_contig96.20927.1|organism=Fucus serratus male|type=polypeptide|length=1123bp MMDPEETEVEELASVPSSFFENSTSPVTGLGGWASGAGNALFAVTKGVSSback to top mRNA from alignment at F-serratus_M_contig96:785670..800610+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig96.20927.1 ID=mRNA_F-serratus_M_contig96.20927.1|Name=mRNA_F-serratus_M_contig96.20927.1|organism=Fucus serratus male|type=mRNA|length=14941bp|location=Sequence derived from alignment at F-serratus_M_contig96:785670..800610+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig96:785670..800610+ >mRNA_F-serratus_M_contig96.20927.1 ID=mRNA_F-serratus_M_contig96.20927.1|Name=mRNA_F-serratus_M_contig96.20927.1|organism=Fucus serratus male|type=CDS|length=6738bp|location=Sequence derived from alignment at F-serratus_M_contig96:785670..800610+ (Fucus serratus male)back to top |