mRNA_F-serratus_M_contig96.20924.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig96.20924.1
Unique NamemRNA_F-serratus_M_contig96.20924.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig96.20924.1 vs. uniprot
Match: D8LC56_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC56_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 3.820e-106
Identity = 210/501 (41.92%), Postives = 295/501 (58.88%), Query Frame = 3
Query:  345 ICENLDAADEAESLQFTLASDEVVTAHRKSFHEYSGNAFSDGIKRKVWVGEIFEGDNFESVPRTISMTWSG-CDLETFMLKVITPT-EGGTITTVSVPCNPSGDTSELCVLKVQNEPRTRVLPLFAATIAAPPFWRTQMHREEEDETDEDLVIDETEYEAGGKNSDGPVRKRRLRSRHKNEANKVQHGSRARRTKRGWRARFARKFLAKEVERGIAIAESEDSNIKDKDADIRLLKEYLSAPPGEKKAFHESGVRRLNAEQVSMPSGRVLQATATVDVMVLYTKKAKFETDSEEGTVRTSSQMETDIITAYEGANNAFLDSGIDMQIRVVHVQEVDFVEGNDMTDAVMGLYKGDQKDLQVHELRDRYGADLVQMVGFYPNTCGIGFTMETPTSGFAKFGYSVVHVSCLSNFSHIHEIGHNLGANHDRDNSAQSS---SYGFGFRYCSGNNPYRTIMSYSSGCSMAPRVNVFSTPLKMYAGKPQGTTTEDNARVLNEAMSTV 1832
            +C+ L+ A EA++L+F++ + + V A   SF               +W G + E ++F+ +PR+ISMTW+  C  + F++++I+P  +GG  T VS+P NPS   +                           F    +H    DE D   V D+        +S G             E   ++ G +      G      R+ LAKE ERGI  A  +D +I  KD DIR L+EY SA P  ++AFHE G+RRL+ + V MP GRVL +   +DV+VLYT+KA  E+DS +G  R+ +QME+DI TAY+GANNA   SG++  +R+VH+++  F E + + D V  +    QK+  VH+LRD YGADLVQ++G+Y NTCG+GFTM +P+SGFA++GYSVVH +CLSNFSHIHE+GHN GANH+++N+  S    +Y + +R C     +RTIM+YSSGC   PRVNVFS P   YA + QGT   DNARVLNEAMS +
Sbjct:    1 MCDTLEDAKEAKALEFSIGAGQTVIADLVSF-------------TTIWTGTVKESEDFDGLPRSISMTWTADCSTQNFVVQMISPAKDGGVDTMVSLP-NPSNGEN---------------------------FLLATVHHNSIDEID---VEDDIGRRLQIADSVG-------------EQTNLRQGVQRSALDDGSEILTPRRLLAKEAERGIERARLDDPDIDAKDNDIRQLQEYRSASPEGQEAFHERGLRRLSEDNVVMPGGRVLSSETVIDVLVLYTEKAMLESDSGDGAGRSIAQMESDIATAYQGANNALSASGVNFSVRIVHMEQAPFDESDSIVDDVRAI----QKNEGVHKLRDEYGADLVQLIGYYLNTCGVGFTMGSPSSGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENAGGSDGVDAYNYAYRNCEVGTKFRTIMAYSSGCPSTPRVNVFSNPDLTYANQRQGTENADNARVLNEAMSEI 440          
BLAST of mRNA_F-serratus_M_contig96.20924.1 vs. uniprot
Match: D8LCC0_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC0_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 3.880e-95
Identity = 258/801 (32.21%), Postives = 340/801 (42.45%), Query Frame = 3
Query:  483 VWVGEIFE-GDNFESVPRTISMTWSGCDLETFMLKVITPTEGGTI-TTVSVPCNPSGDTSELCVLKVQNEPRTRVLPLFAATIAAPPFWRTQMHREEEDETDEDLVIDETEYEAGGKNSDGPVRKRRLRSRHKNEANKVQHG-----------SRAR---RTKRGWR-ARFARKF-------LAKEVERGIAIAESEDSNIKDKDADIRLLKEYLSAPPGEKKAFHESGVRRLNAEQVSMPSGRVLQATATVDVMVLYTKKAKFETDSEEGTVRTSSQMETDIITAYEGANNAFLDSGIDMQIRVVHVQEVDFVEGNDMTDAVMGLYKGDQKDLQVHELRDRYGADLVQMVGFYPNTCGIGFTMETPTSGFAKFGYSVVHVSCLSNFSHIHEIGHNLGANHDRDNSAQSSSYGFGFRYCSGNNPYRTIMSYSSGCSMAPRVNVFSTPLKMYAGKPQGTTTEDNARVLNEAMSTVSNFRESIS---DTPQQKTPAPSPKSSLEPTLDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAPQPMSMNYVNAARSSDQAPSVGSIYPSAINKIMTWKGCFKDDIHDRVMSEGTKMPAVSGVTTGMTRDNCMAYCYNKKKGYKYFGVENRHECFCSWNTDYQRLGKLGREGCDTACEGNSDTTCGGHQSLEVFNIKKLDKDTNVSSPTYQGCYRESMLHLEMANMPVVDYWHTSHEVCDGHCKAAGFAYFGLEFGFLCSCGNTPPSSSLKVPHNECSLPC-SSPATTRSCGGNWNMAVFEIG 2801
            VW GE+ E G  F  +PR+ISM+W+ CD+E FML+V TP   GT   T ++PC    +  ++C+L++ +      L   A T   P     + HR +  + D D        EA G  +DG +R+ R R   + + +   +G           SR+    +T + WR AR +RK        LA EV  G+    + D +I  KD D+RLL EYL A   E++ FHE GVRRL++ +V MPSGRVL AT  +DVMVLYT  A   + +  GT+ T+ QMET+IITAY  AN+A  DSGI   I VVHV E  +V                                                 M TP + F  FGYS+VH  CL N SHIHEIGHN+GANH+R++++    Y    RYC+G+ PYRTIM+Y +GC  APRV +FST  K YA K  GTT+ DNARV+ E++STV NFR+      D+   KTP+             XXX                                                  AP P S                                                                                                                                      T+ S+  YQGCYR S   LE+AN+P+VDY  TS E C  HCKAA FAY+ LEFG +CSCG+  PS S      +C+LPC +S  T+ +CGGNW+ AVF +G
Sbjct:    2 VWTGEVVEAGGGFGGIPRSISMSWNDCDIEHFMLRVKTPQHDGTTRVTTTLPCTDPSEPKQVCLLQLVHAAEEESLETLA-TFEEPEQAHHKGHRRQHAQEDHD--------EARG--ADGNLRRSRSRRHLRKQTSSDDNGGTTGNNYDGGSSRSEGKGQTSKSWRGARRSRKTSEVQRRRLAMEVSEGMEAKRARDPDIDAKDEDVRLLNEYLVASAPEQEVFHERGVRRLSSAEVQMPSGRVLTATTEIDVMVLYTPAAMISSGTA-GTLLTNQQMETEIITAYATANDALADSGISATINVVHVAEARYV-------------------------------------------------MATPRAAFEGFGYSIVHTHCLDNLSHIHEIGHNMGANHNREDTSSEHDYAHAQRYCTGDTPYRTIMAYETGCLQAPRVAMFSTQDKTYASKSLGTTSTDNARVIEESLSTVVNFRDRTEVAYDSASSKTPSQXXXXXXXXXXXXXXXD-------------------------------------------------APTPTSR-------------------------------------------------------------------------------------------------------------------------------------TDGSNGEYQGCYRHSWSELELANVPLVDYEGTSPEGCREHCKAASFAYYALEFGSMCSCGDRLPSDSSLATRADCALPCPNSSLTSLTCGGNWHHAVFSVG 559          
BLAST of mRNA_F-serratus_M_contig96.20924.1 vs. uniprot
Match: A0A6H5JDN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN0_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 1.040e-86
Identity = 167/342 (48.83%), Postives = 214/342 (62.57%), Query Frame = 3
Query:  948 RKFLAKEVERGIAIAESEDSNIKDKDADIRLL-----------------------------KEYLSAPPGEKKAFHESGVRRLNAEQVSMPSGRVLQATATVDVMVLYTKKAKFETDSEEGTVRTSSQMETDIITAYEGANNAFLDSGIDMQIRVVHVQEVDFVEGNDMTDAVMGLYKGDQKDLQVHELRDRYGADLVQMVGFYPNTCGIG----------------FTMETPTSGFAKFGYSVVHVSCLSNFSHIHEIGHNLGANHDRDNSAQSS---SYGFGFRYCSGNNPYRTIMSYSSGCSMAPRVNVFSTPLKMYAGKPQGTTTEDNARVLNEAMST 1829
            R+ LAKE ERGI  A  ED +I  KD DIRLL                             KEY SA P  ++AFHE G+RRLN + V MP GRVL +   +DV+VLYT+KA  E++S +G  R+ +QME+DI TAY+GANNA   SG++  +R+VH+++  F E + + D V  L    QK+  VH+LRD YGADLVQ++G+Y NTCG+G                FTM TP+SGFA++GYSVVH +CLSNFSHIHE+GHN GANH+++N   S    +Y + +R C     +RTIM+YSSGC   PRVNVFS P   YA + QGT   +NARVLNEAM T
Sbjct:   94 RRLLAKEAERGIERARLEDPDIDAKDCDIRLLQANKIIDLASSVSHLRPPLPSAWNYPSIPKEYRSASPEGQEAFHERGLRRLNEDNVVMPGGRVLSSETVIDVLVLYTEKAMLESNSVDGAGRSIAQMESDIATAYQGANNALSASGVNFSVRIVHMEQAPFDESDSIVDDVRAL----QKNEGVHKLRDEYGADLVQLIGYYLNTCGVGSKVSSFFALYPARTHRFTMGTPSSGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENVGGSGGVDAYNYAYRNCDVGTKFRTIMAYSSGCPSTPRVNVFSNPDLTYANQRQGTENANNARVLNEAMVT 431          
BLAST of mRNA_F-serratus_M_contig96.20924.1 vs. uniprot
Match: D8LC57_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC57_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.200e-51
Identity = 94/202 (46.53%), Postives = 117/202 (57.92%), Query Frame = 3
Query: 2151 SIYPSAI-NKIMTWKGCFKDDIHDRVMSEGTKMPAVSGVTTGMTRDNCMAYCYNKKKGYKYFGVENRHECFCSWNTDYQRLGKLGREGCDTACEGNSDTTCGGHQSLEVFNIKKLDKDTNVSSPT-----YQGCYRESMLHLEMANMPVVDYWHTSHEVCDGHCKAAGFAYFGLEFGFLCSCGNTPPSSSLKVPHNECSLPC 2738
            SIYP A+ +K M  KGCF+D   DRVM  GT MPA+ G T GMTRDNCMAYC+N  K YK+FGVEN  +CFC   + Y+R G+L    C T C G+   TCGG  ++EVF IK L  D  V  P      Y+GCY +    L M    +  Y   S E CD HC    + +F L++GF+CSCGN+ P  S +     CS  C
Sbjct:    7 SIYPEALTDKWMKRKGCFQDQFDDRVMHAGTSMPAIEGKTIGMTRDNCMAYCHNHTKNYKFFGVENGEQCFCRNGSKYKRHGELDPSMCSTECAGDRTKTCGGSNAIEVFKIKHLSNDMGVHVPAPSPLDYEGCYLDVRPDLGMDREEIDLYTSASPEACDKHCGEMSYPFFALKYGFICSCGNSVPDESRRADDCLCSTVC 208          
BLAST of mRNA_F-serratus_M_contig96.20924.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 3.960e-41
Identity = 119/307 (38.76%), Postives = 164/307 (53.42%), Query Frame = 3
Query:  990 AESEDSNIKDKDADIRLLKEYLSAPPGEKKAFHESGVRRLNAEQVSMPSGRVLQATATVDVMVLYTKKAKFETDSEEGTVRTSSQMETDIITAYEGANNAFLDSGI-DMQIRVVHVQEVDFVEGNDMTDAVMGLYKGDQKDLQ-----------VHELRDRYGADLVQMVGFYPNTCGIGFTMETPTSGFAKFGYSVVHVSCLSNFSHIHEIGHNLGANHDRDNSAQSSSYGFGFRYCSGNNPYRTIMSY-SSGCS---------MAPRVNVFSTPLKMYAGKPQGTTTEDNARVLNEAMSTVSNFR 1844
            ++S  S+   K    R+LKE   +       F E G R        +PS R LQ T  +DV++ Y+ +A     S EG   + +Q+ T I+      N A  +S I D++ R+VHV E+ + +   MT         D  DL+           V++LR+ Y  DLVQ+VG++P TCG+G+       G A+FG+S+V  +C  NFSH HEI HN+G  HDRDNS     Y  G+RYC+G++PYRTIMSY  +GC          + P+VN FS P   Y  KP GT T DNAR + E+M  VSNFR
Sbjct:  303 SQSSSSSSTSKYQGSRMLKERRVST-----TFMEEGSRWSQG----IPSDRSLQGTTVIDVLIFYSPEAA----SSEGI--SDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYSQ---MT---YDPIDSDDIDLEPELDALAANSAVNDLRNEYQGDLVQLVGYFPGTCGLGYIFN----GNAEFGFSLVGSNCFDNFSHTHEIAHNMGCYHDRDNSETQDEYRHGYRYCTGSDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTGTATADNARCIEESMVAVSNFR 584          
BLAST of mRNA_F-serratus_M_contig96.20924.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.960e-36
Identity = 108/298 (36.24%), Postives = 151/298 (50.67%), Query Frame = 3
Query: 1020 KDADIRLLKEYLSAPPGEKKAFHESGVRRLNAEQVSMPSGRVLQATATVDVMVLYTKKAKFETDSEEGTVRTSSQMETDIITAYEGANNAFLDSGI-DMQIRVVHVQEVDFVEGNDMTDAVMGLYKGDQKDLQ-----------VHELRDRYGADLVQMVGFYPNTCGIGFTMETPTSGFAKFGYSVVHVSCLSNFSHIHEIGHNLGANHDRDNSAQSSSYGFGFRYCSGNNPYRTIMSY-SSGCS---------MAPRVNVFSTPLKMYAGKPQGTTTEDNARVLNEAMSTVSNFRE 1847
            KD   R+LKE   +       + E G  R       M S R LQ T  +DV+++Y+ +A +     E       Q+ T I+      N A  +SGI  ++ R+V V E+ + +        M     D  DL+           V +LR++Y  DLVQ+VG++P TCG+G+       G A FG+S+V  +C  NFSH HEI HN+G  HD++NS    +Y  G+RYC G +PYRTIMSY  +GC          + PRVN FS P   Y  K  GT   DNAR + ++M  VS FR+
Sbjct:  135 KDQGSRMLKERRVST-----TYTEEGSLRSQG----MSSDRRLQGTTVIDVLIVYSPEAAYARGIAEA------QLLTRIVEGMVTLNQAITNSGIAGLEYRLVQVAELPYSQ--------MAYIPSDDIDLKPELDALAANSNVTDLRNQYQGDLVQLVGYFPGTCGLGYIFN----GDAAFGFSLVDSNCFDNFSHTHEIAHNMGCYHDKNNSDTQHAYRHGWRYCEGADPYRTIMSYYHNGCGGDPTSEDDPIVPRVNYFSNPNVTYLNKSTGTAAADNARCIEDSMVAVSEFRD 405          
BLAST of mRNA_F-serratus_M_contig96.20924.1 vs. uniprot
Match: A0A836CMI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMI7_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.990e-36
Identity = 106/295 (35.93%), Postives = 165/295 (55.93%), Query Frame = 3
Query:  984 AIAESEDSNIKDKDADIRLLKEYLSAPPGEKKAFHESGVRRLN-AEQVSMPSGRVLQATATVDVMVLYTKKAKFETDSEEGTVRTSSQMETDIITAYEGANNAFLDSGIDMQIRVVHVQEVDFVEGNDMTDAVMGLYKGDQKDLQVHELRDRYGADLVQMVGFYPNTCGIGFTMETPTSGFAKFGYSVVHVSCLSNFSHIHEIGHNLGANHDRDNSAQSS--SYGFGFRYCS---GNNPY-RTIMSYSSGCSMAPRVNVFSTPLKMYAGKPQGTTTEDNARVLNEAMSTVSNFRE 1847
            ++  S   + +D D D+ LL++ +         F ++G RRL  A QV MPSGR L   +TV V+ LY+ + +     +  T + ++ + T        AN A  +SG+  +++   +  VD+ +   M +A+  L  G      ++  RD+Y ADLVQMV      CG G  + + +S FA +G+SVV+  C+ ++SHIHEIGHN+G  H+ +NS  ++  SYG G+RYC+     +PY R++MSY+  C+ A RV  FS+P   Y G+  G  T DN RVL +   TV+NFR+
Sbjct:  184 SVMASHTQDHQDLDDDVELLQQLMDGNGDAHDHFVKNGGRRLEEAGQVVMPSGRRLDDGSTVRVLWLYSNRVRDRWTDDTITSKIAAGVAT--------ANQALANSGVSFRVKAAAIMHVDYDDTTHM-EALAALNTGSIAG--INTARDKYSADLVQMVIESSEYCGYGNLLYSASSSFAPYGFSVVYSDCIVSYSHIHEIGHNMGCQHNAENSGDATMWSYGVGYRYCNDGVSKSPYYRSVMSYA--CTGATRVPYFSSPDVEYQGRTTGLDTADNVRVLEQTHYTVANFRQ 465          
BLAST of mRNA_F-serratus_M_contig96.20924.1 vs. uniprot
Match: A0A835Z022_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z022_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.850e-35
Identity = 113/330 (34.24%), Postives = 174/330 (52.73%), Query Frame = 3
Query:  930 WRARFARKFLAKEVERGI------AIAESEDSNIKDKDADIRLLKEYLSAPPGEKKAFHESGVRRLNAEQ-VSMPSGRVLQATATVDVMVLYTKKAKFETDSEEGTVRTSSQMETDIITAYEGANNAFLDSGIDMQIRVVHVQEVDFVE---GNDMTDAVMGLYKGDQKDLQVHELRDRYGADLVQMVGFYPNT--CGIGFTMETPTSGFAKFGYSVVHVSCLSNFSHIHEIGHNLGANHDRDNSAQSSS----YGFGFRYCSGNNPYRTIMSYSS-GCSMAPRVNVFSTPLKMYAGKPQGTTT--EDNARVLNEAMSTVSNFRESISDT 1862
            W AR +   L + V+R        A++ S+ +     DAD+ LL++ L        AFH  G RRL  E  V MPSGR L   + ++V++ YT  A       E  +  ++Q  + I  AY  AN    ++ +  ++ + +V+ VD+VE   G+ M  A+  L  GD  ++  +  RD Y  DLV M+   PN   CG+G+    P + ++  G+++V   C++ ++H+HE+GHN+GA HDR   A S +    Y +G+R C   N + ++M+Y+   CS   RV  +ST L  Y G P GT+T  +DNARV  E    VSNFR S + T
Sbjct:  209 WLARISHDPLPRSVKRSAPKSAHRALSASQAATAAAHDADVELLQQVLRGDGDAADAFHRGGGRRLEGENAVIMPSGRRLDDGSVINVLMAYTNAA-------EAAMGGATQTVSVINAAYGTANQVLANTNLPYRMSMSYVK-VDYVEATSGDTMGTALNALTNGDVTNIFYY--RDTYAFDLVLMIIHDPNYMYCGMGWVGFPPMTDYSGLGFTIVEAPCMNGYTHMHEMGHNMGAFHDRATDANSGTPGWPYAWGYRTCGSTNKFSSVMAYTDYSCSGQVRVPYYSTSLINYNGSPLGTSTPGDDNARVFRETSLPVSNFRVSSATT 528          
BLAST of mRNA_F-serratus_M_contig96.20924.1 vs. uniprot
Match: A0A835YK21_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK21_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.820e-35
Identity = 119/325 (36.62%), Postives = 176/325 (54.15%), Query Frame = 3
Query:  981 IAIAESEDSNIKDKDADIRLLKEYLSAPPGEKKAFHESGVRRLNAE-QVSMPSGRVLQATATVDVMVLYTKKAKFETDSEEGTVRTSSQMETDIITAYEGANNAFLDSGIDMQIRVVHVQEVDFVEGN------DMTDAVMGLYKGDQKDLQVHELRDRYGADLVQMVGFYPNTCGIGFTMETPTSGFAKFGYSVVHVSCLSNFSHIHEIGHNLGANHDRDNSAQSS--SYGFGFRYCSGN---NPY-RTIMSYSSGCSMAPRVNVFSTPLKMYAGKPQGTT-TEDNARVLNEAMSTVSNFRESISDTPQQKTPAPS-PKSSLEP 1910
            +A AE+ + +    D D+ LL++ L+      + F  SG RRL+ E  V MPSGR L   + V V+ LYT + +           T + + + I++    AN A ++S    Q+    +  +D+ + +      D++ + +           V  LRD Y ADLVQM+   P  CG G  + + +S FA +GYSVV+  C++++SHIHEIGHN+G  H+ +NS Q++   YG G+RYC+      PY RTIMSY+  C+ A RV  FS+P   Y G   GT  T DN RVL +   TV+NFR+  S TP   T AP+ P ++L P
Sbjct:  263 LAAAEAPNPDRDAFDKDLALLQQMLTGDSAATEVFARSGGRRLHEEGAVLMPSGRRLDDGSVVRVLWLYTNRVRDRW--------TDATITSKIVSGVVSANQALINSNAGFQLEAAAIINIDYDDVSHVQSLSDLSYSAIPXXXXXXXXXXVTFLRDFYRADLVQMIIEAPEYCGYGNLLSSASSSFASYGYSVVYSDCIASYSHIHEIGHNMGCQHNVENSGQTTVWPYGDGYRYCNDGVTQAPYFRTIMSYA--CTGATRVPYFSSPNIYYQGVATGTAATADNLRVLLQTKYTVANFRQGGS-TP---TAAPTAPPATLTP 573          
BLAST of mRNA_F-serratus_M_contig96.20924.1 vs. uniprot
Match: A0A836C8G9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G9_9STRA)

HSP 1 Score: 155 bits (392), Expect = 5.680e-35
Identity = 114/309 (36.89%), Postives = 164/309 (53.07%), Query Frame = 3
Query: 1023 DADIRLLKEYLSAPPGEKKAFHESGVRRLNAEQ-VSMPSGRVLQATATVDVMVLYTKKAKFETDSEEGTVRTSSQMETDIITAYEGANNAFLDSGIDMQIRVVHVQEVDFVEGNDMTDAVMGLYKGDQKDLQVHELRDRYGADLVQMVGFYPNTCGIGFTMETPTSGFAKFGYSVVHVSCL--SNFSHIHEIGHNLGANHDRDNSAQSSS------YGFGFRYCSGNNPYRTIMSYSSGCSMAPRVNVFSTPLKMYAGKPQGTTTEDNARVLNEAMSTVSNFRESISDTPQQKTPAPSPKSSLEPTLDA 1922
            D DI+L+   +         F  SG RRL  E  V MPSGR L     V VM +Y   +        G+    SQ+ + +  A   AN    +S   +Q+ +  +   ++ +  DM  A+  +  G       +  RD Y ADL+QM+   P  CG+G+ + + T+  +K+G S V V CL  SN++HIHEIGHNLGA+HD      SS+      Y FG+RYCS  N +RTIM+Y+   + +PR+  FS+PL  Y G P GT TEDNAR L  + + V+N+R + + T    TPAPS   + +P L+A
Sbjct:  342 DDDIKLMASTVGDDD-----FERSGGRRLERENAVVMPSGRRLDDGTVVRVMYIYGNAS--------GSRWGGSQIYSMVAAAITSANLVLSNSNAGVQLELATLLYSNYND-TDMYAALNAMVAGTVPG--ANAARDAYSADLMQMLTEDPRYCGLGWVLNSATNANSKYGNSAVQVLCLGSSNWAHIHEIGHNLGAHHDVSTDGASSATGSDWPYSFGYRYCSTPN-FRTIMAYTCNPNTSPRIPYFSSPLITYNGYPTGTATEDNARTLRSSRTAVANYRTTTAST-LTITPAPS-DPNCKPDLNA 631          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig96.20924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC56_ECTSI3.820e-10641.92Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp... [more]
D8LCC0_ECTSI3.880e-9532.21Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp... [more]
A0A6H5JDN0_9PHAE1.040e-8648.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC57_ECTSI1.200e-5146.53WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JF50_9PHAE3.960e-4138.76LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE1.960e-3636.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CMI7_9STRA1.990e-3635.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z022_9STRA1.850e-3534.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YK21_9STRA2.820e-3536.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8G9_9STRA5.680e-3536.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig96contigF-serratus_M_contig96:744610..753555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.4
Seed ortholog evalue5.1e-96
Seed eggNOG ortholog2880.D8LC56
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E79G@1,2SDWE@2759
Ec32 ortholog descriptionMetallopeptidase, catalytic domain
Ec32 orthologEc-20_004540.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons18
Model size3905
Cds size2754
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig96.20924.1prot_F-serratus_M_contig96.20924.1Fucus serratus malepolypeptideF-serratus_M_contig96 744669..752441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932728.28818-UTR-F-serratus_M_contig96:744609..7446681622932728.28818-UTR-F-serratus_M_contig96:744609..744668Fucus serratus maleUTRF-serratus_M_contig96 744610..744668 +
1690964444.0305595-UTR-F-serratus_M_contig96:744609..7446681690964444.0305595-UTR-F-serratus_M_contig96:744609..744668Fucus serratus maleUTRF-serratus_M_contig96 744610..744668 +
1622932728.6322184-UTR-F-serratus_M_contig96:752441..7532731622932728.6322184-UTR-F-serratus_M_contig96:752441..753273Fucus serratus maleUTRF-serratus_M_contig96 752442..753273 +
1690964444.2396345-UTR-F-serratus_M_contig96:752441..7532731690964444.2396345-UTR-F-serratus_M_contig96:752441..753273Fucus serratus maleUTRF-serratus_M_contig96 752442..753273 +
1622932728.6484725-UTR-F-serratus_M_contig96:753295..7535551622932728.6484725-UTR-F-serratus_M_contig96:753295..753555Fucus serratus maleUTRF-serratus_M_contig96 753296..753555 +
1690964444.248796-UTR-F-serratus_M_contig96:753295..7535551690964444.248796-UTR-F-serratus_M_contig96:753295..753555Fucus serratus maleUTRF-serratus_M_contig96 753296..753555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932728.3081656-CDS-F-serratus_M_contig96:744668..7449271622932728.3081656-CDS-F-serratus_M_contig96:744668..744927Fucus serratus maleCDSF-serratus_M_contig96 744669..744927 +
1690964444.0437746-CDS-F-serratus_M_contig96:744668..7449271690964444.0437746-CDS-F-serratus_M_contig96:744668..744927Fucus serratus maleCDSF-serratus_M_contig96 744669..744927 +
1622932728.3244119-CDS-F-serratus_M_contig96:745373..7454651622932728.3244119-CDS-F-serratus_M_contig96:745373..745465Fucus serratus maleCDSF-serratus_M_contig96 745374..745465 +
1690964444.0559359-CDS-F-serratus_M_contig96:745373..7454651690964444.0559359-CDS-F-serratus_M_contig96:745373..745465Fucus serratus maleCDSF-serratus_M_contig96 745374..745465 +
1622932728.337027-CDS-F-serratus_M_contig96:745809..7458811622932728.337027-CDS-F-serratus_M_contig96:745809..745881Fucus serratus maleCDSF-serratus_M_contig96 745810..745881 +
1690964444.0647838-CDS-F-serratus_M_contig96:745809..7458811690964444.0647838-CDS-F-serratus_M_contig96:745809..745881Fucus serratus maleCDSF-serratus_M_contig96 745810..745881 +
1622932728.3531175-CDS-F-serratus_M_contig96:746007..7460941622932728.3531175-CDS-F-serratus_M_contig96:746007..746094Fucus serratus maleCDSF-serratus_M_contig96 746008..746094 +
1690964444.0802548-CDS-F-serratus_M_contig96:746007..7460941690964444.0802548-CDS-F-serratus_M_contig96:746007..746094Fucus serratus maleCDSF-serratus_M_contig96 746008..746094 +
1622932728.3798559-CDS-F-serratus_M_contig96:746364..7464751622932728.3798559-CDS-F-serratus_M_contig96:746364..746475Fucus serratus maleCDSF-serratus_M_contig96 746365..746475 +
1690964444.0916028-CDS-F-serratus_M_contig96:746364..7464751690964444.0916028-CDS-F-serratus_M_contig96:746364..746475Fucus serratus maleCDSF-serratus_M_contig96 746365..746475 +
1622932728.394327-CDS-F-serratus_M_contig96:746685..7470511622932728.394327-CDS-F-serratus_M_contig96:746685..747051Fucus serratus maleCDSF-serratus_M_contig96 746686..747051 +
1690964444.1008632-CDS-F-serratus_M_contig96:746685..7470511690964444.1008632-CDS-F-serratus_M_contig96:746685..747051Fucus serratus maleCDSF-serratus_M_contig96 746686..747051 +
1622932728.4081905-CDS-F-serratus_M_contig96:747431..7475481622932728.4081905-CDS-F-serratus_M_contig96:747431..747548Fucus serratus maleCDSF-serratus_M_contig96 747432..747548 +
1690964444.1104069-CDS-F-serratus_M_contig96:747431..7475481690964444.1104069-CDS-F-serratus_M_contig96:747431..747548Fucus serratus maleCDSF-serratus_M_contig96 747432..747548 +
1622932728.4472854-CDS-F-serratus_M_contig96:748311..7484881622932728.4472854-CDS-F-serratus_M_contig96:748311..748488Fucus serratus maleCDSF-serratus_M_contig96 748312..748488 +
1690964444.121571-CDS-F-serratus_M_contig96:748311..7484881690964444.121571-CDS-F-serratus_M_contig96:748311..748488Fucus serratus maleCDSF-serratus_M_contig96 748312..748488 +
1622932728.4687502-CDS-F-serratus_M_contig96:748721..7488731622932728.4687502-CDS-F-serratus_M_contig96:748721..748873Fucus serratus maleCDSF-serratus_M_contig96 748722..748873 +
1690964444.1326554-CDS-F-serratus_M_contig96:748721..7488731690964444.1326554-CDS-F-serratus_M_contig96:748721..748873Fucus serratus maleCDSF-serratus_M_contig96 748722..748873 +
1622932728.4881072-CDS-F-serratus_M_contig96:749043..7492321622932728.4881072-CDS-F-serratus_M_contig96:749043..749232Fucus serratus maleCDSF-serratus_M_contig96 749044..749232 +
1690964444.1426394-CDS-F-serratus_M_contig96:749043..7492321690964444.1426394-CDS-F-serratus_M_contig96:749043..749232Fucus serratus maleCDSF-serratus_M_contig96 749044..749232 +
1622932728.508862-CDS-F-serratus_M_contig96:749514..7496561622932728.508862-CDS-F-serratus_M_contig96:749514..749656Fucus serratus maleCDSF-serratus_M_contig96 749515..749656 +
1690964444.1535735-CDS-F-serratus_M_contig96:749514..7496561690964444.1535735-CDS-F-serratus_M_contig96:749514..749656Fucus serratus maleCDSF-serratus_M_contig96 749515..749656 +
1622932728.528769-CDS-F-serratus_M_contig96:749993..7503911622932728.528769-CDS-F-serratus_M_contig96:749993..750391Fucus serratus maleCDSF-serratus_M_contig96 749994..750391 +
1690964444.172855-CDS-F-serratus_M_contig96:749993..7503911690964444.172855-CDS-F-serratus_M_contig96:749993..750391Fucus serratus maleCDSF-serratus_M_contig96 749994..750391 +
1622932728.546053-CDS-F-serratus_M_contig96:750606..7507191622932728.546053-CDS-F-serratus_M_contig96:750606..750719Fucus serratus maleCDSF-serratus_M_contig96 750607..750719 +
1690964444.1839373-CDS-F-serratus_M_contig96:750606..7507191690964444.1839373-CDS-F-serratus_M_contig96:750606..750719Fucus serratus maleCDSF-serratus_M_contig96 750607..750719 +
1622932728.5673437-CDS-F-serratus_M_contig96:750917..7511041622932728.5673437-CDS-F-serratus_M_contig96:750917..751104Fucus serratus maleCDSF-serratus_M_contig96 750918..751104 +
1690964444.1949334-CDS-F-serratus_M_contig96:750917..7511041690964444.1949334-CDS-F-serratus_M_contig96:750917..751104Fucus serratus maleCDSF-serratus_M_contig96 750918..751104 +
1622932728.5833282-CDS-F-serratus_M_contig96:751338..7514231622932728.5833282-CDS-F-serratus_M_contig96:751338..751423Fucus serratus maleCDSF-serratus_M_contig96 751339..751423 +
1690964444.2056005-CDS-F-serratus_M_contig96:751338..7514231690964444.2056005-CDS-F-serratus_M_contig96:751338..751423Fucus serratus maleCDSF-serratus_M_contig96 751339..751423 +
1622932728.598456-CDS-F-serratus_M_contig96:751698..7518241622932728.598456-CDS-F-serratus_M_contig96:751698..751824Fucus serratus maleCDSF-serratus_M_contig96 751699..751824 +
1690964444.216354-CDS-F-serratus_M_contig96:751698..7518241690964444.216354-CDS-F-serratus_M_contig96:751698..751824Fucus serratus maleCDSF-serratus_M_contig96 751699..751824 +
1622932728.6146812-CDS-F-serratus_M_contig96:752360..7524411622932728.6146812-CDS-F-serratus_M_contig96:752360..752441Fucus serratus maleCDSF-serratus_M_contig96 752361..752441 +
1690964444.230183-CDS-F-serratus_M_contig96:752360..7524411690964444.230183-CDS-F-serratus_M_contig96:752360..752441Fucus serratus maleCDSF-serratus_M_contig96 752361..752441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig96.20924.1

>prot_F-serratus_M_contig96.20924.1 ID=prot_F-serratus_M_contig96.20924.1|Name=mRNA_F-serratus_M_contig96.20924.1|organism=Fucus serratus male|type=polypeptide|length=918bp
MNFSLLWVLLFGIGGLLPSVCGQETAWGVSDKNEQASSRANTSISGKNVP
MMGVRNTRPLCDAQDGVGCSVGVKILAAFEADELVTVTEVETGELICENL
DAADEAESLQFTLASDEVVTAHRKSFHEYSGNAFSDGIKRKVWVGEIFEG
DNFESVPRTISMTWSGCDLETFMLKVITPTEGGTITTVSVPCNPSGDTSE
LCVLKVQNEPRTRVLPLFAATIAAPPFWRTQMHREEEDETDEDLVIDETE
YEAGGKNSDGPVRKRRLRSRHKNEANKVQHGSRARRTKRGWRARFARKFL
AKEVERGIAIAESEDSNIKDKDADIRLLKEYLSAPPGEKKAFHESGVRRL
NAEQVSMPSGRVLQATATVDVMVLYTKKAKFETDSEEGTVRTSSQMETDI
ITAYEGANNAFLDSGIDMQIRVVHVQEVDFVEGNDMTDAVMGLYKGDQKD
LQVHELRDRYGADLVQMVGFYPNTCGIGFTMETPTSGFAKFGYSVVHVSC
LSNFSHIHEIGHNLGANHDRDNSAQSSSYGFGFRYCSGNNPYRTIMSYSS
GCSMAPRVNVFSTPLKMYAGKPQGTTTEDNARVLNEAMSTVSNFRESISD
TPQQKTPAPSPKSSLEPTLDATFEPTVESTLEPIMEPTLEPTPKPALKPM
REPVLWPSPEPISKPSSEPMAKPMAPQPMSMNYVNAARSSDQAPSVGSIY
PSAINKIMTWKGCFKDDIHDRVMSEGTKMPAVSGVTTGMTRDNCMAYCYN
KKKGYKYFGVENRHECFCSWNTDYQRLGKLGREGCDTACEGNSDTTCGGH
QSLEVFNIKKLDKDTNVSSPTYQGCYRESMLHLEMANMPVVDYWHTSHEV
CDGHCKAAGFAYFGLEFGFLCSCGNTPPSSSLKVPHNECSLPCSSPATTR
SCGGNWNMAVFEIGTTD*
back to top

mRNA from alignment at F-serratus_M_contig96:744610..753555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig96.20924.1 ID=mRNA_F-serratus_M_contig96.20924.1|Name=mRNA_F-serratus_M_contig96.20924.1|organism=Fucus serratus male|type=mRNA|length=8946bp|location=Sequence derived from alignment at F-serratus_M_contig96:744610..753555+ (Fucus serratus male)
TGATCAAGCATTTGTACTGGGATCGGTACAGCGGCGCAGAGGTATCAAAC AGCTCGGAGATGAACTTTTCGTTGCTCTGGGTATTACTATTTGGAATCGG CGGTCTTCTCCCCTCAGTTTGTGGCCAGGAGACGGCCTGGGGGGTGTCCG ATAAGAATGAACAAGCTAGCTCCCGGGCGAATACCTCCATATCAGGCAAG AATGTGCCGATGATGGGCGTCAGGAACACGCGGCCTCTTTGCGACGCGCA GGATGGCGTGGGCTGCTCAGTCGGTGTTAAAATCCTCGCCGCCTTTGAAG CAGATGAACTGGTGACAGGTGATGCGTACACGCACAGGAAAGTCTAGCGA TATGACTGATCGTTTCATGTGGAAATTTACCCCAGGAGAATGCTGGTGGT AGTCGCACAAACTGCCCCGCCGTGCAGATTACCCTGCACGCCGTAGATGA TGTTCAAGGCCGGTTTTTTCTGTAAAACGTACTTTGTGCGTGATTGATGC GGTTAGCTCTATGCTGTCAATCGGTCGAACCATGCCGTTGAATTGTTGAT GGGATTCGTTGCAAAGAACTGAATACAAACTGTTCGCCATGCATTCTCCG TCATAGGCCATAGTAGTACCCCAAGATTCAATTTTCTCTCTGGGTTCAAC TGTTGGTTTTGCAAATTTTAGTTTCCTCCCCAAGCGCGGGTCTTTCGCCA ATCTCGCACATGCTTTGTTGCTGCTGCCACGTCAAACACTTGTGGCAATA ATTTCTTCACGCAGTTACCGAGGTTGAGACGGGCGAACTAATATGTGAAA ACTTGGACGCCGCTGACGAAGCCGAAAGTCTTCAGTTCACCCTCGCTAGC GATGAGGTTCGCTGAGCTTGGATATTGTCGCTTAACACGGTAGATGATTT GTTATTCCAGGAACCTGGGCCAGTGGTCAAAGCTCCCAGATAGCGAACAT CGTTCGAACTGCCGTCGCACATGATAGGAAATATACTGCATGTGAAGTTG ACATCTTCGTAGGTTCGCAAATCTTGAGTTATGCAGGGTCGCGTTTAATA TGTATGATGAAAAACTAGGGAAACATTTCTTCATGCTCTATGCTCAGTGG TTGTGTAGCTTTTCCCGGTATGCTAACTCGGCGTGCCACCTGCCTCGATC TGAAACAACTGGTGCACTCGCGTCGGGCGTTAACGTGTCTTCTCGATAAG GTGGTGACGGCCCACAGGAAATCGTTCCACGAATATTCCGGAAACGCTTT CTCCGACGGAATCAAGCGAAAGGTACGATGACGTCGGGGATCTTCACCTA CATGTAGCCTACCGACCGCAACCTTGAACGACTTTTCGCATGACATCTCG GACTCGTCCAGATAACGCCCGCTCCCACCATCTATTCCATCCGGACAGGT CTGGGTGGGAGAGATTTTCGAGGGCGACAACTTTGAAAGTGTTCCAAGAA CTATCTCAATGACCTGGAGTGGCTGCGACTTGGAGGTAGGTGAGAAGGTT CGGAGTGTACTGACAGCCGCCTTGGTGACCCAGCTACAGAGTGTTGCCGT CCTGGACATTACCCGGAGACGACCCTGGATGTTTTTTTTGCACCTCACCT GAGCTTGGTTTCGTTCTGCCTCCTTAGCAAGAAGAATCGGTTGCATCCGG TACTACATTGCTGCAGAGTTCCTTCCACGCGAAAGCAAAAACACGCGGTC TTCCTCACGACTCACAACCCTCGCCTCCCTCAATCCCGCCCAATTTCGTT TCAAGACTTTCATGTTAAAAGTCATCACTCCGACCGAAGGGGGCACCATC ACCACCGTATCCGTCCCCTGTAATCCAAGCGGCGACACATCAGAACTATG CGTGCTAAAGGTACAAGTATAGCCCTCGTGATCTGCCGCTCCCGCTAAAG AGTTTCTGTATTTGTTCTTAATAGACAAAAATGAAACGGTGAAGAAACGT CTTGATTGCACAGCACAGTTGAAGGTACGGCGCCTCGACCAGCGCCAGCC GAACCATTTCCACGAGCTCCATCGAGAGTAAAGTAGTTCCGCGTGTTATG ATACGAAATGCGGCTAAGGTTACGAGAACGAACCACGTACGCGCGTGTTG CCGCTTTTCGCCGCTACGATCGCCGCGCCACCGTTTTGGCGGACCCAGAT GCACCGGGAGGAGGAAGACGAAACGGACGAGGATCTTGTTATCGACGAGA CGGAATACGAAGCCGGTGGTAAGAACAGCGACGGACCGGTTAGGAAGCGG CGACTCAGATCTCGCCACAAAAACGAGGCCAACAAAGTTCAACATGGTTC TAGAGCGAGGAGGACCAAACGGGGGTGGAGGGCCCGATTTGCGCGCAAGT TCCTCGCGAAGGAGGTGGAACGTGGAATTGCGATCGCCGAGTCAGAAGAC TCCAACATAAAAGATAAAGATGCCGACATCCGCCTTCTAAAGGTATAATA ACCGTTTTCCTGGCTCCTCCAGAGTGAAATAAACGATTGAAAGTATTAAT CTTCATTGTTTTGATCAATTGTTGGTCTCGCCCCTTGCTCACCGGAACTG AGGAAGCTGGAAATGGACTTTGTATTTTTTTCTATTCGGTACGAGGTTGG ACTGACCGACGACGAGGCTGGCCATTCTTCTGAGGAACTATTACGATGAT TGCCACGCTCTGAGATGCACCCCTCGAGAAGAGGTACGGGTAGGACTTGG CAATATCACCTATTAATAGGTGTATGCCACATCACCATTCCACCGTGTTA CTCTCACGGCATGTACGCGCACGCCTCTCGCTGCACATTTGCTCGACACC ACTGGCTGCTGACGTCTACAAGGAATATCTTTCAGCTCCTCCGGGGGAAA AAAAAGCGTTTCACGAGAGTGGTGTACGACGTCTGAACGCGGAGCAGGTC TCAATGCCAAGCGGCCGCGTCCTTCAGGCAACAGCCACGGTCAGTATGGC AACGTAGCGTAGAACTACGTCGAACGGACCACAACCTCGCAGTAAAACCA GCATTCACTCATCATGTATATATCTGACTTGGCCATAGGGCCGTCCGCGT CTTCGGCGCAAGACCTCAAAGTGCCCTCCTGACGCAGTGCCTTAAACGAG ATATCGAGATACTATCGTTGGTTAGCGTTGAGGAAGCATCATACGGATAT ATGATTGGGAGATTTTGTTCCCGCGAAACCCCAAACATATGTTACTGATG GTGAGGATATCAGTTGACAATTACCACAGGGTAAGGGTCAGTTGACAATT ACTACGGAGCAATTTATTTTAACAACACTCTCCACCCACAAATATCAATC ATCCGTTGCGGAAGTGGATTAGCCAGGTTCGAGAAGACTTGCAGCGTTAT TAAGTCGTAAAAGGTCCATCCGGTTCAAGCTCGTAGGAATACCATGTAGC ATTCATTCTATTCCAATATTATCATATCCAACCAATATTTGGCCCGGGAA TTCGATGAGGAAAATAAGCCAGGTCAGCAGGATTCTATCCCAGTCCAAGC GAACGTCGTCAATGTGATGAGGATAGTAGTATTATACCGCTACGTGGGTA AAAGACGATTGATAATTACCATAGGGTACTTAGTCCTCGCAGTAGTACGC AATGCGCTGGGGAAAAAAGTCCTACGTAATCATGTCTCAATGGCGCGCGT GCTTTCAAGGGCCTTTGACCCGCCGCACTCCACGAAACTCACCCATCCTC AGGTTGACGTCATGGTACTCTACACGAAGAAGGCAAAGTTCGAGACCGAC TCGGAAGAGGGAACCGTGCGAACAAGTTCCCAGATGGAAACGGACATAAT CACCGCCTACGAGGGTGCCAATAACGCTTTCCTCGACTCAGGCATTGACA TGCAAATCCGGGTCGTTCACGTGCAAGAGGTACTCTGTCGAATTCTTATT GACCTTGGCCGACCAAACCTTGGTTGGGTGGACTACGAGACGCACCGGAG ATGTGATGTTGTTGGATTTGTAGCTAAACCACACGCCACAGCAACCCCGG CGTGACACCAAAATTGTCAGGTGTGCAAGCCATGCGATGTTTAGAGCAGT TCCCTTGAGGTCTGACCCACTGCTAACATACCGCCATGATAATCTTGGAA CGCAACGATCAGGTCGACTTCGTCGAGGGAAACGACATGACGGACGCCGT GATGGGGTTATACAAAGGGGATCAGAAAGATCTGCAAGTGCACGAACTCC GCGACCGTTACGGCGCCGACCTGGTGCAGATGGTTGGTTTCTACCCCAAC ACATGTGGCATTGGGTGGGTAATAAAGGGCTAGCGAAGCGGTCACACGAT AACATTTTCGGTCCATCCTCCGCGGCGTAGGTGGGTGGCTGTGGTGGGGG GTTGTGGCGTCTTAACTGAACGACTTTGTGTCCACTGTTCCCACCTCTAT ACGCCACTTCCGTATTTGCGTACCGTGCTCTCAGGTTCACCATGGAGACA CCGACCTCCGGCTTCGCTAAGTTCGGATACTCCGTGGTCCATGTCAGTTG CCTATCAAACTTCTCGCACATCCACGAGATAGGTCATAACCTGGGGGCTA ATCACGACCGTGACAACTCGGCGCAGAGCAGCAGCTACGGATTTGGCTTC CGCTACTGCAGTGGGAACAATCCGTAAGTTTATAGGAATGCAATACCGGA TTTGTATTGCCGCGAGAAATATGATATGATCGAGATGTCCCCAAAGGGAA ACGAGGTCGTGGTAAGGCCTGAACTCGGCTGCAATGGGCAGTCGAGATCA GTCATTGACAAAGGGTGTTCGCGTTAAAAAGCTGTAAGTCCGTCTGTTCG ACAAGTACGCGGTTTTGCGACCCTTATCCCGCTCAAAGTCCCTGCATTCG TCTCTTGCTACTTGACCGTGTGCGATGTTCATGGGAAATCCAAAATACTA CAAAGGTATCGGACCATCATGTCGTATTCGAGCGGTTGTTCTATGGCTCC GCGCGTAAACGTATTCTCAACGCCCCTCAAGATGTACGCCGGCAAGCCGC AGGGAACAACAACTGAAGATAATGCTCGAGTCTTGAACGAAGCCATGGTG AGGTGGCTGCTGCGTACTTTGAACGCCATCGTGCGACGAAGAACAGGAGT CAGCAGCAGTGCAAAACAGTAATATTATAATAAATGCCATAGCAGTGCCT GGTATCGACTTGTGGGATCGCTATGAATGTATTGTGGCCAAAGGTACACA GCGGCGTGATACGATGTTTTGCTTCCATTGCTCCAAACAACAACCATGTT CGCGTCTTCTGCAAAAGACTGCGCGGACGCACTTGAGCTCTTCCGCCAGA ACACCCTACGCTGGATGGACTTGTTTCTCCCCTTAATTCGCCTCCCCCCG CACCCATACCCTCTCGTTCGACCTTACCTGGCAGTCGACGGTGTCCAACT TCCGGGAATCTATCTCGGACACCCCACAACAGAAAACCCCAGCACCTTCT CCTAAGTCTTCACTTGAGCCGACCTTGGATGCCACCTTTGAGCCTACCGT GGAGTCCACTCTTGAGCCGATCATGGAACCCACCCTAGAGCCTACACCGA AGCCTGCCCTGAAGCCTATGCGGGAGCCCGTACTTTGGCCAAGCCCGGAA CCCATCTCGAAGCCCTCCTCGGAGCCTATGGCAAAGCCGATGGCGCCGCA GCCCATGTCTATGAACTATGTTAATGCAGCTAGGTCATCCGACCAGGCGC CATCTGTCGGTTCAATATATCCAAGTGCCATCAATAAAATCATGACGTGG AAGGGTTGTTTCAAGGATGACATTCACGATAGGTGGGCGATGATGCGTGA GGCAATAATTGCGGGAAGGGGTGAGACAGGACGTAGGATAGAGTGCAACA ACGGAGTTACGGAGCAATCATGGCGCAAAGGGGGGGGGAGGAGGCTTTTG AACTATCGAGCCAAGGAACACTTTTCGAACCAACCCGGCGTCTACTACAC TACGTCTGCTTGGTTTGTCATTGCTCGCCTTTGCCGCTCTCTGACAGAGT AATGAGCGAAGGCACGAAAATGCCGGCCGTTTCAGGAGTAACCACCGGCA TGACCCGTGACAATTGCATGGCATATTGTTACAACAAGAAAAAAGGATAC AAGTACTTCGGTGAGAGTTTTTTACACCATCGTGGGGCGATGCTTCTGCC CGAGGGGACCCCCGTCGTAATGTTTAATTGATACGCCGATGGTGTGATTC GGTCCTATATTGCGAAATAGATTCCAGTACACGTTCCGGCGATAGACACG CAAAAGGCGACCCTTCCCGCCAGATCACCAGGACTGTTCGCTTGCTCGTG TCTGACAGGCGTGGAAAACAGGCATGAGTGCTTCTGCTCGTGGAATACAG ACTACCAGCGCTTGGGCAAGCTTGGGAGGGAGGGGTGCGACACAGCGTGC GAAGGGAACAGCGACACTACCTGCGGCGGGCATCAGTCGCTAGAGGTGTT CAATATCAAGAAGCTCGACAAGGACACCAACGTTTCTTCCCCCACGTAAG TGTTGACTTCCGCAATGGTTCGTGGAAGCTCTAGATTTCCTCCGCCCAGG GTAATGTGACACCTTTCTTTGAGGGTGCATCATGCCAAAATAAGTTCTAG AAGGAATGCACCGATACTCCTCTCCCGGCCCCCTGCGCATTTAGCTTTCC CCAACGTTGATGACGGAGTTCCTGACTCTGGCTACCCTCGCTGCTTCTCT GTATCGACACGAATAATTGCCACCCAAAGCTACCAAGGCTGCTACCGGGA ATCCATGCTTCATCTCGAGATGGCCAATATGCCGGTTGTAGACTATTGGC ACACGAGTCACGAGGTGGGGCCTTTGGTTTGTCGAGGTCTTTAATAACCC GGTACAGTTGAACGAAATGTATGTCGATACTGTCCAGTGGAGAAGAAGGC GTAAGACCCTATCCCAGGGGGGCGATCTGTAGGTTTTTGCCGCGCGATGA ACCTACACGCTCGCTTAGACCAGGATCGATTGCTCGAACACTGTTCAGGT CTTCAGAACGTACTGTACCTTAAAAAAATGTCCGGCCTGGATTCCTTCTT CCCTGCCTACGCTTTCTTTCTTTGCTATACTCAAGTCAGGTATGTGATGG GCACTGTAAGGCAGCAGGCTTTGCTTACTTCGGGCTGGAGTTTGGATTCT TGTGTTCCTGCGGAAACACTCCACCGAGTTCATCCCTTAAAGTTCCTCAC AATGAGTGTTCCCTGGTAAGAGGGGGACGTCGAAGGCGTTTCAATTCTTA GCAAAAAATAGCGTTTTTCTTGTCACCCCCCACGCGCTGCTCGTGCCTAC CATCTGGCGCTCGCCTTGTACTGTATTTATTTTGGCGATACTAGCTGCAG TTTGTCTATCAGCCTTCAACTGTACTGTATATATACATACGCTTTTCGGG GTCCCCAGACTTGCTGACATGGGTTAGTATGAGAGTACCATCCGTTTTTT TTACAATATCATCCTTCTTACAAACTGTTCCACTACTAGTTATTTAGGCT GTCCTCTAGCTCTTTCTGCGACGAGGAAGATGAGGTTAATGCCAGCGAAA AGGCTTCCAAGAACTCCAGTAGATACCTCAAGCCTCAATCCCACGTCACG TGTAGCACAATACTTGCCGAAGTGTGAAGACCAACTAGGGTTCAAAAAGC GAGCTGCAGTAGTTACATCGGAGCAACGAGGCTATCGTTCGCCTAAATAG GAGATATCCGACCCCTTGCCTCGCTCCGCTAATGTCATGAGTGGCGCGTA GCCTTGCTCGAGCCCCGCGACAACCAGATCTTGTGGCGGAAACTGGAATA TGGCCGTGTTTGAGATCGGCACGACGGACTAGATGTAAGGGGCAGGGGCG TTCATCCCCAAGACTCCAACTAGGATGACTGATACGAGGGAAACTAAGGG GAGGGCAGGTATCCTTCCCCTGGCATTCGGAGACCAGGCGCTAATGCACA GGAGACGAATCCTCCCTTGATGTGGTAAGCGGGAAGTGATCCTGGAAATT AGGATCCACAGCCCGAAAGGTTTGTCTGACTGTTTCAAAACGTTTCGCCG AATGACTATTTAAACAGGTTGGGGTACCCATGCGGGGTTTATCTTAGCGG ACGCTTGGGCCGATTTATGATATGAGGGGAGGTTCAGGAATGGCCAACTG TAAAGCTTATGTGTACCCAGACAATGATAATGGTGGTCGTTGAGCGGCAG CGCGGTCAAAACCGAGGACGGGATTAAGAGATCCAAGAAGCGGTCGCTCA ATATTTATTTCGACGTTTGCCTTCTACGGTCCGATGGTTTTCCCGTCTTG TTGCACTGACGATACGTACGGGCATGATCTCCGATCCAGCATTTTTGAGC CGATCGGCGGCAATAGTGAACGTAATCGGGAAGCGGGTGCGGGTCGCAAC ATTGTAGACAAAAACATTTAACGGTCAATCTGCAGAGAGGCAAAAGTTCG ACCGATATGATGCGGCTCAAACCCACGATTCCTCAAGACAGGGAAGCTTG TCACTCTCCAATTGAAGCTGATCTGTGTAGCAATGCGCGTTTTTTTTCGG TGGGACGGTGCCAACTTACTTGTAAGAAACAAGAGCAGGATCTGTCCAGG CCCGAGCACATCGATGATTTGAGTATGTACAATATGCAAGGTAACCCCAA ACCTCCAGCTACGAGTATTACTATTGATAGCACAAGCATCTATTAATACT ATACACTGGTGAAGGGTGTGGGCCACTGCTTTCATTCCTAGAAACGAACT TTCCTTGTATCAGGTCGACTTTTATACTGAAATTTACTTGTAAAATATTG GGTCACCGGAAAAGAAGAGGTGCATTTTTTTCTACTAGTGAGTAGTATTA AGTGAGAAGAGGTCTTTAGTGAGTAGTATGAAGAGATGAGCACGTGCTAC ATCGGCCTTGGATGCTATTAATAATACACTCTCGCCAGAGGGAAGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig96:744610..753555+

>mRNA_F-serratus_M_contig96.20924.1 ID=mRNA_F-serratus_M_contig96.20924.1|Name=mRNA_F-serratus_M_contig96.20924.1|organism=Fucus serratus male|type=CDS|length=5508bp|location=Sequence derived from alignment at F-serratus_M_contig96:744610..753555+ (Fucus serratus male)
ATGAACTTTTCGTTGCTCTGGGTATTACTATTTGGAATCGGCGGTCTTCT
CCCCTCAGTTTGTGGCCAGGAGACGGCCTGGGGGGTGTCCGATAAGAATG
AACAAGCTAGCTCCCGGGCGAATACCTCCATATCAGGCAAGAATGTGCCG
ATGATGGGCGTCAGGAACACGCGGCCTCTTTGCGACGCGCAGGATGGCGT
GGGCTGCTCAGTCGGTGTTAAAATCCTCGCCGCCTTTGAAGCAGATGAAC
TGGTGACAGATGAACTTTTCGTTGCTCTGGGTATTACTATTTGGAATCGG
CGGTCTTCTCCCCTCAGTTTGTGGCCAGGAGACGGCCTGGGGGGTGTCCG
ATAAGAATGAACAAGCTAGCTCCCGGGCGAATACCTCCATATCAGGCAAG
AATGTGCCGATGATGGGCGTCAGGAACACGCGGCCTCTTTGCGACGCGCA
GGATGGCGTGGGCTGCTCAGTCGGTGTTAAAATCCTCGCCGCCTTTGAAG
CAGATGAACTGGTGACAGTTACCGAGGTTGAGACGGGCGAACTAATATGT
GAAAACTTGGACGCCGCTGACGAAGCCGAAAGTCTTCAGTTCACCCTCGC
TAGCGATGAGTTACCGAGGTTGAGACGGGCGAACTAATATGTGAAAACTT
GGACGCCGCTGACGAAGCCGAAAGTCTTCAGTTCACCCTCGCTAGCGATG
AGGTGGTGACGGCCCACAGGAAATCGTTCCACGAATATTCCGGAAACGCT
TTCTCCGACGGAATCAAGCGAAAGGTGGTGACGGCCCACAGGAAATCGTT
CCACGAATATTCCGGAAACGCTTTCTCCGACGGAATCAAGCGAAAGGTCT
GGGTGGGAGAGATTTTCGAGGGCGACAACTTTGAAAGTGTTCCAAGAACT
ATCTCAATGACCTGGAGTGGCTGCGACTTGGAGGTCTGGGTGGGAGAGAT
TTTCGAGGGCGACAACTTTGAAAGTGTTCCAAGAACTATCTCAATGACCT
GGAGTGGCTGCGACTTGGAGACTTTCATGTTAAAAGTCATCACTCCGACC
GAAGGGGGCACCATCACCACCGTATCCGTCCCCTGTAATCCAAGCGGCGA
CACATCAGAACTATGCGTGCTAAAGGTACAAACTTTCATGTTAAAAGTCA
TCACTCCGACCGAAGGGGGCACCATCACCACCGTATCCGTCCCCTGTAAT
CCAAGCGGCGACACATCAGAACTATGCGTGCTAAAGGTACAAAACGAACC
ACGTACGCGCGTGTTGCCGCTTTTCGCCGCTACGATCGCCGCGCCACCGT
TTTGGCGGACCCAGATGCACCGGGAGGAGGAAGACGAAACGGACGAGGAT
CTTGTTATCGACGAGACGGAATACGAAGCCGGTGGTAAGAACAGCGACGG
ACCGGTTAGGAAGCGGCGACTCAGATCTCGCCACAAAAACGAGGCCAACA
AAGTTCAACATGGTTCTAGAGCGAGGAGGACCAAACGGGGGTGGAGGGCC
CGATTTGCGCGCAAGTTCCTCGCGAAGGAGGTGGAACGTGGAATTGCGAT
CGCCGAGTCAGAAGACTCCAACATAAAAGATAAAGATGCCGACATCCGCC
TTCTAAAGAACGAACCACGTACGCGCGTGTTGCCGCTTTTCGCCGCTACG
ATCGCCGCGCCACCGTTTTGGCGGACCCAGATGCACCGGGAGGAGGAAGA
CGAAACGGACGAGGATCTTGTTATCGACGAGACGGAATACGAAGCCGGTG
GTAAGAACAGCGACGGACCGGTTAGGAAGCGGCGACTCAGATCTCGCCAC
AAAAACGAGGCCAACAAAGTTCAACATGGTTCTAGAGCGAGGAGGACCAA
ACGGGGGTGGAGGGCCCGATTTGCGCGCAAGTTCCTCGCGAAGGAGGTGG
AACGTGGAATTGCGATCGCCGAGTCAGAAGACTCCAACATAAAAGATAAA
GATGCCGACATCCGCCTTCTAAAGGAATATCTTTCAGCTCCTCCGGGGGA
AAAAAAAGCGTTTCACGAGAGTGGTGTACGACGTCTGAACGCGGAGCAGG
TCTCAATGCCAAGCGGCCGCGTCCTTCAGGCAACAGCCACGGAATATCTT
TCAGCTCCTCCGGGGGAAAAAAAAGCGTTTCACGAGAGTGGTGTACGACG
TCTGAACGCGGAGCAGGTCTCAATGCCAAGCGGCCGCGTCCTTCAGGCAA
CAGCCACGGTTGACGTCATGGTACTCTACACGAAGAAGGCAAAGTTCGAG
ACCGACTCGGAAGAGGGAACCGTGCGAACAAGTTCCCAGATGGAAACGGA
CATAATCACCGCCTACGAGGGTGCCAATAACGCTTTCCTCGACTCAGGCA
TTGACATGCAAATCCGGGTCGTTCACGTGCAAGAGGTTGACGTCATGGTA
CTCTACACGAAGAAGGCAAAGTTCGAGACCGACTCGGAAGAGGGAACCGT
GCGAACAAGTTCCCAGATGGAAACGGACATAATCACCGCCTACGAGGGTG
CCAATAACGCTTTCCTCGACTCAGGCATTGACATGCAAATCCGGGTCGTT
CACGTGCAAGAGGTCGACTTCGTCGAGGGAAACGACATGACGGACGCCGT
GATGGGGTTATACAAAGGGGATCAGAAAGATCTGCAAGTGCACGAACTCC
GCGACCGTTACGGCGCCGACCTGGTGCAGATGGTTGGTTTCTACCCCAAC
ACATGTGGCATTGGGTCGACTTCGTCGAGGGAAACGACATGACGGACGCC
GTGATGGGGTTATACAAAGGGGATCAGAAAGATCTGCAAGTGCACGAACT
CCGCGACCGTTACGGCGCCGACCTGGTGCAGATGGTTGGTTTCTACCCCA
ACACATGTGGCATTGGGTTCACCATGGAGACACCGACCTCCGGCTTCGCT
AAGTTCGGATACTCCGTGGTCCATGTCAGTTGCCTATCAAACTTCTCGCA
CATCCACGAGATAGGTCATAACCTGGGGGCTAATCACGACCGTGACAACT
CGGCGCAGAGCAGCAGCTACGGATTTGGCTTCCGCTACTGCAGTGGGAAC
AATCCGTTCACCATGGAGACACCGACCTCCGGCTTCGCTAAGTTCGGATA
CTCCGTGGTCCATGTCAGTTGCCTATCAAACTTCTCGCACATCCACGAGA
TAGGTCATAACCTGGGGGCTAATCACGACCGTGACAACTCGGCGCAGAGC
AGCAGCTACGGATTTGGCTTCCGCTACTGCAGTGGGAACAATCCGTATCG
GACCATCATGTCGTATTCGAGCGGTTGTTCTATGGCTCCGCGCGTAAACG
TATTCTCAACGCCCCTCAAGATGTACGCCGGCAAGCCGCAGGGAACAACA
ACTGAAGATAATGCTCGAGTCTTGAACGAAGCCATGGTATCGGACCATCA
TGTCGTATTCGAGCGGTTGTTCTATGGCTCCGCGCGTAAACGTATTCTCA
ACGCCCCTCAAGATGTACGCCGGCAAGCCGCAGGGAACAACAACTGAAGA
TAATGCTCGAGTCTTGAACGAAGCCATGTCGACGGTGTCCAACTTCCGGG
AATCTATCTCGGACACCCCACAACAGAAAACCCCAGCACCTTCTCCTAAG
TCTTCACTTGAGCCGACCTTGGATGCCACCTTTGAGCCTACCGTGGAGTC
CACTCTTGAGCCGATCATGGAACCCACCCTAGAGCCTACACCGAAGCCTG
CCCTGAAGCCTATGCGGGAGCCCGTACTTTGGCCAAGCCCGGAACCCATC
TCGAAGCCCTCCTCGGAGCCTATGGCAAAGCCGATGGCGCCGCAGCCCAT
GTCTATGAACTATGTTAATGCAGCTAGGTCATCCGACCAGGCGCCATCTG
TCGGTTCAATATATCCAAGTGCCATCAATAAAATCATGACGTGGAAGGGT
TGTTTCAAGGATGACATTCACGATAGTCGACGGTGTCCAACTTCCGGGAA
TCTATCTCGGACACCCCACAACAGAAAACCCCAGCACCTTCTCCTAAGTC
TTCACTTGAGCCGACCTTGGATGCCACCTTTGAGCCTACCGTGGAGTCCA
CTCTTGAGCCGATCATGGAACCCACCCTAGAGCCTACACCGAAGCCTGCC
CTGAAGCCTATGCGGGAGCCCGTACTTTGGCCAAGCCCGGAACCCATCTC
GAAGCCCTCCTCGGAGCCTATGGCAAAGCCGATGGCGCCGCAGCCCATGT
CTATGAACTATGTTAATGCAGCTAGGTCATCCGACCAGGCGCCATCTGTC
GGTTCAATATATCCAAGTGCCATCAATAAAATCATGACGTGGAAGGGTTG
TTTCAAGGATGACATTCACGATAGAGTAATGAGCGAAGGCACGAAAATGC
CGGCCGTTTCAGGAGTAACCACCGGCATGACCCGTGACAATTGCATGGCA
TATTGTTACAACAAGAAAAAAGGATACAAGTACTTCGAGTAATGAGCGAA
GGCACGAAAATGCCGGCCGTTTCAGGAGTAACCACCGGCATGACCCGTGA
CAATTGCATGGCATATTGTTACAACAAGAAAAAAGGATACAAGTACTTCG
GCGTGGAAAACAGGCATGAGTGCTTCTGCTCGTGGAATACAGACTACCAG
CGCTTGGGCAAGCTTGGGAGGGAGGGGTGCGACACAGCGTGCGAAGGGAA
CAGCGACACTACCTGCGGCGGGCATCAGTCGCTAGAGGTGTTCAATATCA
AGAAGCTCGACAAGGACACCAACGTTTCTTCCCCCACGCGTGGAAAACAG
GCATGAGTGCTTCTGCTCGTGGAATACAGACTACCAGCGCTTGGGCAAGC
TTGGGAGGGAGGGGTGCGACACAGCGTGCGAAGGGAACAGCGACACTACC
TGCGGCGGGCATCAGTCGCTAGAGGTGTTCAATATCAAGAAGCTCGACAA
GGACACCAACGTTTCTTCCCCCACCTACCAAGGCTGCTACCGGGAATCCA
TGCTTCATCTCGAGATGGCCAATATGCCGGTTGTAGACTATTGGCACACG
AGTCACGAGCTACCAAGGCTGCTACCGGGAATCCATGCTTCATCTCGAGA
TGGCCAATATGCCGGTTGTAGACTATTGGCACACGAGTCACGAGGTATGT
GATGGGCACTGTAAGGCAGCAGGCTTTGCTTACTTCGGGCTGGAGTTTGG
ATTCTTGTGTTCCTGCGGAAACACTCCACCGAGTTCATCCCTTAAAGTTC
CTCACAATGAGTGTTCCCTGGTATGTGATGGGCACTGTAAGGCAGCAGGC
TTTGCTTACTTCGGGCTGGAGTTTGGATTCTTGTGTTCCTGCGGAAACAC
TCCACCGAGTTCATCCCTTAAAGTTCCTCACAATGAGTGTTCCCTGCCTT
GCTCGAGCCCCGCGACAACCAGATCTTGTGGCGGAAACTGGAATATGGCC
GTGTTTGAGATCGGCACGACGGACTAGCCTTGCTCGAGCCCCGCGACAAC
CAGATCTTGTGGCGGAAACTGGAATATGGCCGTGTTTGAGATCGGCACGA
CGGACTAG
back to top