mRNA_F-serratus_M_contig96.20917.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig96.20917.1
Unique NamemRNA_F-serratus_M_contig96.20917.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig96.20917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig96contigF-serratus_M_contig96:481777..482162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932724.8376071-CDS-F-serratus_M_contig96:481776..4820911622932724.8376071-CDS-F-serratus_M_contig96:481776..482091Fucus serratus maleCDSF-serratus_M_contig96 481777..482091 +
1690964442.0670867-CDS-F-serratus_M_contig96:481776..4820911690964442.0670867-CDS-F-serratus_M_contig96:481776..482091Fucus serratus maleCDSF-serratus_M_contig96 481777..482091 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932724.8529887-UTR-F-serratus_M_contig96:482091..4821621622932724.8529887-UTR-F-serratus_M_contig96:482091..482162Fucus serratus maleUTRF-serratus_M_contig96 482092..482162 +
1690964442.082749-UTR-F-serratus_M_contig96:482091..4821621690964442.082749-UTR-F-serratus_M_contig96:482091..482162Fucus serratus maleUTRF-serratus_M_contig96 482092..482162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig96.20917.1prot_F-serratus_M_contig96.20917.1Fucus serratus malepolypeptideF-serratus_M_contig96 481777..482091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig96.20917.1

>prot_F-serratus_M_contig96.20917.1 ID=prot_F-serratus_M_contig96.20917.1|Name=mRNA_F-serratus_M_contig96.20917.1|organism=Fucus serratus male|type=polypeptide|length=105bp
QDFKVIRTTLNTQPPLSCTWYSVHKHEHEPQHSLRSFSNQNFTIISFKQS
RPRQPPFTIIQGNWKLRYSITKSGGLALLSTTPIQRNNNHDEGKANSWDR
RKKR*
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mRNA from alignment at F-serratus_M_contig96:481777..482162+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig96.20917.1 ID=mRNA_F-serratus_M_contig96.20917.1|Name=mRNA_F-serratus_M_contig96.20917.1|organism=Fucus serratus male|type=mRNA|length=386bp|location=Sequence derived from alignment at F-serratus_M_contig96:481777..482162+ (Fucus serratus male)
CAAGATTTCAAGGTAATAAGGACCACGCTAAACACGCAACCTCCCCTTTC
ATGTACCTGGTATTCAGTACACAAACATGAACATGAACCCCAACATTCCC
TTCGTTCATTCAGTAACCAAAATTTCACAATAATATCCTTCAAACAGTCA
CGCCCGCGACAGCCGCCATTCACAATAATCCAGGGAAACTGGAAACTTCG
TTACAGTATCACAAAAAGTGGCGGTCTCGCTCTCCTCTCTACAACTCCCA
TCCAAAGAAACAACAACCACGACGAGGGGAAAGCTAACTCGTGGGACAGA
CGAAAGAAGCGATGACAACAAACCGAAAATACATCAAGGCCACAGCAGTT
ATGACCCAAATCAACCAAGCGCACGCATTGTTTGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig96:481777..482162+

>mRNA_F-serratus_M_contig96.20917.1 ID=mRNA_F-serratus_M_contig96.20917.1|Name=mRNA_F-serratus_M_contig96.20917.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig96:481777..482162+ (Fucus serratus male)
CAAGATTTCAAGGTAATAAGGACCACGCTAAACACGCAACCTCCCCTTTC
ATGTACCTGGTATTCAGTACACAAACATGAACATGAACCCCAACATTCCC
TTCGTTCATTCAGTAACCAAAATTTCACAATAATATCCTTCAAACAGTCA
CGCCCGCGACAGCCGCCATTCACAATAATCCAGGGAAACTGGAAACTTCG
TTACAGTATCACAAAAAGTGGCGGTCTCGCTCTCCTCTCTACAACTCCCA
TCCAAAGAAACAACAACCACGACGAGGGGAAAGCTAACTCGTGGGACAGA
CGAAAGAAGCGATGACAAGATTTCAAGGTAATAAGGACCACGCTAAACAC
GCAACCTCCCCTTTCATGTACCTGGTATTCAGTACACAAACATGAACATG
AACCCCAACATTCCCTTCGTTCATTCAGTAACCAAAATTTCACAATAATA
TCCTTCAAACAGTCACGCCCGCGACAGCCGCCATTCACAATAATCCAGGG
AAACTGGAAACTTCGTTACAGTATCACAAAAAGTGGCGGTCTCGCTCTCC
TCTCTACAACTCCCATCCAAAGAAACAACAACCACGACGAGGGGAAAGCT
AACTCGTGGGACAGACGAAAGAAGCGATGA
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