mRNA_F-serratus_M_contig956.20902.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig956.20902.1
Unique NamemRNA_F-serratus_M_contig956.20902.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig956.20902.1 vs. uniprot
Match: D7FIG9_ECTSI (Trimethylguanosine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG9_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 3.350e-59
Identity = 90/104 (86.54%), Postives = 99/104 (95.19%), Query Frame = 1 
Query:    1 SKYWGQRYRYFSRFDDGITLDQEGWYSVTPEAIALHIAERVCCDVLVDPFVGCGGNTVQFALLCHLVFAIDLDPVKLEHARRRAAIYGVENRIEFILGDAMDVL 312
            +KYWGQRYRYFSRFD+G+T+D+EGWYSVTPEAIA HIAERVCCDV+VDPFVGCGGN VQFAL+ HLVFAID+DPVKLEHARR AAIYGVE+RIEFILGDAM VL
Sbjct:  199 NKYWGQRYRYFSRFDEGVTMDEEGWYSVTPEAIARHIAERVCCDVVVDPFVGCGGNAVQFALVAHLVFAIDIDPVKLEHARRNAAIYGVEDRIEFILGDAMKVL 302
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BLAST of mRNA_F-serratus_M_contig956.20902.1 vs. uniprot
Match: A0A6H5LQ95_9PHAE (Trimethylguanosine synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ95_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.560e-57
Identity = 89/104 (85.58%), Postives = 99/104 (95.19%), Query Frame = 1 
Query:    1 SKYWGQRYRYFSRFDDGITLDQEGWYSVTPEAIALHIAERVCCDVLVDPFVGCGGNTVQFALLCHLVFAIDLDPVKLEHARRRAAIYGVENRIEFILGDAMDVL 312
            +KYWGQRYRYFSRFD+G+T+D+EGWYSVTPEAIA HIAERVCCDV+VDPFVGCGGN VQFAL+ HLVFA+D+DPVKLEHARR AAIYGVE+RIEFILGDAM VL
Sbjct:  456 NKYWGQRYRYFSRFDEGVTMDEEGWYSVTPEAIARHIAERVCCDVVVDPFVGCGGNAVQFALVAHLVFAVDIDPVKLEHARRNAAIYGVEDRIEFILGDAMKVL 559
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BLAST of mRNA_F-serratus_M_contig956.20902.1 vs. uniprot
Match: A0A197JEL5_9FUNG (Trimethylguanosine synthase (Fragment) n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JEL5_9FUNG)

HSP 1 Score: 153 bits (387), Expect = 1.430e-45
Identity = 70/104 (67.31%), Postives = 81/104 (77.88%), Query Frame = 1 
Query:    1 SKYWGQRYRYFSRFDDGITLDQEGWYSVTPEAIALHIAERVCCDVLVDPFVGCGGNTVQFALLCHLVFAIDLDPVKLEHARRRAAIYGVENRIEFILGDAMDVL 312
            +KYW QRYRYFS +D GI +DQEGWYSVTPE IA HIAER   DV++D F G GGNT+QFA+ CH V AID+DPV+L  AR  A IYGVE+RIEFI GD M +L
Sbjct:    2 AKYWAQRYRYFSLYDQGIQMDQEGWYSVTPEKIAAHIAERCASDVIIDAFCGVGGNTIQFAMTCHRVIAIDIDPVRLACARHNARIYGVEDRIEFICGDYMTLL 105
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BLAST of mRNA_F-serratus_M_contig956.20902.1 vs. uniprot
Match: V4AVC3_LOTGI (Trimethylguanosine synthase n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AVC3_LOTGI)

HSP 1 Score: 149 bits (375), Expect = 1.230e-42
Identity = 69/103 (66.99%), Postives = 81/103 (78.64%), Query Frame = 1 
Query:    4 KYWGQRYRYFSRFDDGITLDQEGWYSVTPEAIALHIAERVCCDVLVDPFVGCGGNTVQFALLCHLVFAIDLDPVKLEHARRRAAIYGVENRIEFILGDAMDVL 312
            KYW QRYR FSRFD+GI LD+E W+SVTPE I+ HIAER  CDV+VD F G GGNT+QFAL C  V AID+DPVK+E AR  A +YGVE+RIEFI+GD   V+
Sbjct:   59 KYWYQRYRLFSRFDEGIQLDRESWFSVTPEKISEHIAERCQCDVIVDGFCGAGGNTIQFALYCERVIAIDIDPVKIELARNNAKVYGVEDRIEFIVGDFYKVM 161
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BLAST of mRNA_F-serratus_M_contig956.20902.1 vs. uniprot
Match: A7SAF9_NEMVE (Trimethylguanosine synthase n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SAF9_NEMVE)

HSP 1 Score: 147 bits (371), Expect = 1.320e-42
Identity = 66/104 (63.46%), Postives = 80/104 (76.92%), Query Frame = 1 
Query:    1 SKYWGQRYRYFSRFDDGITLDQEGWYSVTPEAIALHIAERVCCDVLVDPFVGCGGNTVQFALLCHLVFAIDLDPVKLEHARRRAAIYGVENRIEFILGDAMDVL 312
            +KYW QRYR FSRFD+GI +D+EGWYSVTPE IA HIAER  CD++VD F G GGN +QFA  C  V AID+DPVK++ AR  A IYGV +RIEF+LGD   ++
Sbjct:   11 AKYWAQRYRLFSRFDEGIKMDKEGWYSVTPERIAEHIAERCRCDLIVDAFCGVGGNAIQFAFTCERVIAIDIDPVKIDCARHNAEIYGVADRIEFVLGDFRQIV 114
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BLAST of mRNA_F-serratus_M_contig956.20902.1 vs. uniprot
Match: A0A433DLE7_9FUNG (Trimethylguanosine synthase n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DLE7_9FUNG)

HSP 1 Score: 152 bits (383), Expect = 1.550e-42
Identity = 68/100 (68.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    4 KYWGQRYRYFSRFDDGITLDQEGWYSVTPEAIALHIAERVCCDVLVDPFVGCGGNTVQFALLCHLVFAIDLDPVKLEHARRRAAIYGVENRIEFILGDAM 303
            KYWGQRYRYFS FD G+ LD+EGWYS+TPE IA HIA+R  C V++D F GCGGN +QFA  C  V AID+DP+KL  AR  A IYGVE+RIEFILGD M
Sbjct:   97 KYWGQRYRYFSLFDYGVYLDREGWYSITPEKIAAHIAKRCRCGVIIDAFTGCGGNAIQFAFTCERVIAIDIDPIKLHCARHNARIYGVEDRIEFILGDYM 196
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BLAST of mRNA_F-serratus_M_contig956.20902.1 vs. uniprot
Match: H2ZN24_CIOSA (Trimethylguanosine synthase n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZN24_CIOSA)

HSP 1 Score: 149 bits (377), Expect = 1.760e-42
Identity = 68/102 (66.67%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    4 KYWGQRYRYFSRFDDGITLDQEGWYSVTPEAIALHIAERVCCDVLVDPFVGCGGNTVQFALLCHLVFAIDLDPVKLEHARRRAAIYGVENRIEFILGDAMDV 309
            KYW QRY+ FS+FDDG+ LD+E WYSVTPE IA HIAER  CD++VD F G GGN++QFA  C  V AID+DPVKLE+AR  AAIYGVE+RIEFI G   D+
Sbjct:   58 KYWVQRYKLFSKFDDGVRLDKESWYSVTPEKIAEHIAERCRCDIIVDAFCGSGGNSIQFAFTCERVIAIDIDPVKLENARHNAAIYGVEDRIEFICGSFFDL 159
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BLAST of mRNA_F-serratus_M_contig956.20902.1 vs. uniprot
Match: F6PXD8_CIOIN (Trimethylguanosine synthase n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6PXD8_CIOIN)

HSP 1 Score: 148 bits (373), Expect = 4.370e-42
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:    4 KYWGQRYRYFSRFDDGITLDQEGWYSVTPEAIALHIAERVCCDVLVDPFVGCGGNTVQFALLCHLVFAIDLDPVKLEHARRRAAIYGVENRIEFILGDAMDV 309
            KYW QRY+ FSRFD+GI LD+E WYSVTPE IA HIAER  CDV+VD F G GGN +QFA  C  V AID+DPVKLE+A+  AAIYGVE+RI+FI G   D+
Sbjct:   41 KYWVQRYKLFSRFDEGIKLDRESWYSVTPEKIAEHIAERCRCDVIVDAFCGSGGNAIQFAFTCEKVLAIDIDPVKLENAKHNAAIYGVEDRIDFICGSFFDI 142
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BLAST of mRNA_F-serratus_M_contig956.20902.1 vs. uniprot
Match: A0A1Y2GY59_9FUNG (Trimethylguanosine synthase n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GY59_9FUNG)

HSP 1 Score: 147 bits (372), Expect = 5.160e-42
Identity = 66/103 (64.08%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:    4 KYWGQRYRYFSRFDDGITLDQEGWYSVTPEAIALHIAERVCCDVLVDPFVGCGGNTVQFALLCHLVFAIDLDPVKLEHARRRAAIYGVENRIEFILGDAMDVL 312
            KYW QRYRYF  FD GI +D+EGWYSVTPE IA HIA+R  CDV++D F G GGN +QFA+ CH V AID+DPV+L  A+  A IYGVE+RIEFI GD M ++
Sbjct:   19 KYWYQRYRYFRLFDQGIRMDKEGWYSVTPEKIAAHIAQRCACDVVIDAFCGVGGNAIQFAMTCHRVIAIDIDPVRLMCAKHNAKIYGVEDRIEFICGDYMTLI 121
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BLAST of mRNA_F-serratus_M_contig956.20902.1 vs. uniprot
Match: T1FY55_HELRO (Trimethylguanosine synthase n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FY55_HELRO)

HSP 1 Score: 144 bits (364), Expect = 1.560e-41
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 SKYWGQRYRYFSRFDDGITLDQEGWYSVTPEAIALHIAERVCCDVLVDPFVGCGGNTVQFALLCHLVFAIDLDPVKLEHARRRAAIYGVENRIEFILGD 297
            +KYW QRYR FSRFD GI +D EGWYSVTPE IA HIA R  CDV+VD F G GGNT+QFA  C+ V AID+DP K+ +AR  AAIYGV ++I+FI+GD
Sbjct:    9 NKYWAQRYRLFSRFDRGIRIDDEGWYSVTPEKIARHIANRCKCDVIVDAFCGIGGNTIQFAFTCNKVIAIDIDPQKISYARHNAAIYGVAHKIQFIVGD 107
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig956.20902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIG9_ECTSI3.350e-5986.54Trimethylguanosine synthase n=1 Tax=Ectocarpus sil... [more]
A0A6H5LQ95_9PHAE1.560e-5785.58Trimethylguanosine synthase n=1 Tax=Ectocarpus sp.... [more]
A0A197JEL5_9FUNG1.430e-4567.31Trimethylguanosine synthase (Fragment) n=1 Tax=Lin... [more]
V4AVC3_LOTGI1.230e-4266.99Trimethylguanosine synthase n=1 Tax=Lottia gigante... [more]
A7SAF9_NEMVE1.320e-4263.46Trimethylguanosine synthase n=1 Tax=Nematostella v... [more]
A0A433DLE7_9FUNG1.550e-4268.00Trimethylguanosine synthase n=2 Tax=Jimgerdemannia... [more]
H2ZN24_CIOSA1.760e-4266.67Trimethylguanosine synthase n=1 Tax=Ciona savignyi... [more]
F6PXD8_CIOIN4.370e-4266.67Trimethylguanosine synthase n=1 Tax=Ciona intestin... [more]
A0A1Y2GY59_9FUNG5.160e-4264.08Trimethylguanosine synthase n=1 Tax=Lobosporangium... [more]
T1FY55_HELRO1.560e-4165.66Trimethylguanosine synthase n=1 Tax=Helobdella rob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig956contigF-serratus_M_contig956:245241..246483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.5
Seed ortholog evalue7.6e-49
Seed eggNOG ortholog2880.D7FIG9
Preferred nameTGS1
KEGG koko:K03125,ko:K10408,ko:K14292
KEGG Pathwayko03013,ko03022,ko05016,map03013,map03022,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008380,GO:0009451,GO:0009452,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016740,GO:0016741,GO:0019216,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034622,GO:0034641,GO:0036260,GO:0036261,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0065003,GO:0065007,GO:0070013,GO:0071164,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0120114,GO:0140098,GO:1901360,GO:1990904
EggNOG free text desc.RNA trimethylguanosine synthase activity
EggNOG OGsKOG2730@1,KOG2730@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03021,ko03036,ko04812
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932723.925386-CDS-F-serratus_M_contig956:245240..2453101622932723.925386-CDS-F-serratus_M_contig956:245240..245310Fucus serratus maleCDSF-serratus_M_contig956 245241..245310 -
1690964441.5767853-CDS-F-serratus_M_contig956:245240..2453101690964441.5767853-CDS-F-serratus_M_contig956:245240..245310Fucus serratus maleCDSF-serratus_M_contig956 245241..245310 -
1622932723.9468865-CDS-F-serratus_M_contig956:246241..2464831622932723.9468865-CDS-F-serratus_M_contig956:246241..246483Fucus serratus maleCDSF-serratus_M_contig956 246242..246483 -
1690964441.587674-CDS-F-serratus_M_contig956:246241..2464831690964441.587674-CDS-F-serratus_M_contig956:246241..246483Fucus serratus maleCDSF-serratus_M_contig956 246242..246483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig956.20902.1prot_F-serratus_M_contig956.20902.1Fucus serratus malepolypeptideF-serratus_M_contig956 245241..246483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig956.20902.1

>prot_F-serratus_M_contig956.20902.1 ID=prot_F-serratus_M_contig956.20902.1|Name=mRNA_F-serratus_M_contig956.20902.1|organism=Fucus serratus male|type=polypeptide|length=104bp
SKYWGQRYRYFSRFDDGITLDQEGWYSVTPEAIALHIAERVCCDVLVDPF
VGCGGNTVQFALLCHLVFAIDLDPVKLEHARRRAAIYGVENRIEFILGDA
MDVL
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mRNA from alignment at F-serratus_M_contig956:245241..246483-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig956.20902.1 ID=mRNA_F-serratus_M_contig956.20902.1|Name=mRNA_F-serratus_M_contig956.20902.1|organism=Fucus serratus male|type=mRNA|length=1243bp|location=Sequence derived from alignment at F-serratus_M_contig956:245241..246483- (Fucus serratus male)
AGCAAGTATTGGGGCCAGCGGTACCGCTACTTCTCAAGGTTTGACGATGG
CATCACTCTGGATCAGGAGGGCTGGTACTCTGTGACACCAGAGGCGATCG
CTTTACACATTGCGGAGCGGGTATGCTGTGACGTACTGGTGGACCCTTTC
GTTGGATGCGGGGGCAACACGGTCCAGTTCGCGCTCCTGTGTCACCTGGT
TTTTGCCATCGACCTAGACCCCGTCAAGCTCGAGCATGCCCGGTGAGCTC
CTCGATGTCGCACTCTTGTCTTAACTTAAGTATATTGTGTATCGTGATTC
AATTTCTGACCTGTAGATTACTGAACCCAAGATATTGAGGGGCGCCAAAA
AGTGGCCCTCGACTGCTCTCCCTCCACCATTGAGATGAGTACAGTACGAG
TAATGATGCCCGGTGTCTTTTGTGGAGCACTTTGTATAGTGTATAGTGTA
TAGTGTTAAAAGTCCAAGACTACTGTGGGACTGTTGTGGTTGTTTTTTTC
CCTCCTCGTTTTCACTCTCGATACTCCAACGCCATCTCATATCATCTCCA
GTTCCAGTTCCACCCCATCATTTTCCCCGTATAGTATATAGAAGAACGTA
TCAAGACTCCTGCTGGTGTGTTCTGCTTTTGGTGTACCTGCGTAGCGATA
AGTTTAAGTGTACAACATGATGGTGGGTTCCTCCCAAATATTATTCTGTT
GACCCTATGCGTCTAACTTGGGAGAACCCAACTATTAATATCAATAAACG
TTTGGACACAAGTTCCCCGCTGGCAAGGAAACTCGGAAGGTTTGATAATA
GATAGATACCTTCACATTTTTATGTGAACATATTCGCTTGCGGACAACAA
CAAAAATGGACTGCACTTGGCTTACGTTGCATCGTTGCATCGTTGCATCC
TCGACGGGGTACGGGTATGGCCAGTTCCCCCCCCCCCGTTGGTTGTTGGT
CGCAGGTGTAGCTCAAGTAGAACAACGCTGTTGTTTTTTCGCCTCTTACT
CGAGGGAGAAGGGTAGGAGCACAAAGGCCACTGCGCGTTGTCCTTTTTGC
TTTGTCCTTGACGTCGCTACGAGAGGATATAGATTGAAGATCGAGTACCC
TCCCCTGTATGCCCCGTGTGCACTGCCCCGCTCCTTTCTCATCGTTTGCG
TTATCGTATGCGTCCGGTGGCAGACGCCGCGCTGCTATCTACGGGGTCGA
AAACCGGATCGAGTTCATCCTGGGGGATGCCATGGATGTACTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig956:245241..246483-

>mRNA_F-serratus_M_contig956.20902.1 ID=mRNA_F-serratus_M_contig956.20902.1|Name=mRNA_F-serratus_M_contig956.20902.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig956:245241..246483- (Fucus serratus male)
AGCAAGTATTGGGGCCAGCGGTACCGCTACTTCTCAAGGTTTGACGATGG
CATCACTCTGGATCAGGAGGGCTGGTACTCTGTGACACCAGAGGCGATCG
CTTTACACATTGCGGAGCGGGTATGCTGTGACGTACTGGTGGACCCTTTC
GTTGGATGCGGGGGCAACACGGTCCAGTTCGCGCTCCTGTGTCACCTGGT
TTTTGCCATCGACCTAGACCCCGTCAAGCTCGAGCATGCCCGAGCAAGTA
TTGGGGCCAGCGGTACCGCTACTTCTCAAGGTTTGACGATGGCATCACTC
TGGATCAGGAGGGCTGGTACTCTGTGACACCAGAGGCGATCGCTTTACAC
ATTGCGGAGCGGGTATGCTGTGACGTACTGGTGGACCCTTTCGTTGGATG
CGGGGGCAACACGGTCCAGTTCGCGCTCCTGTGTCACCTGGTTTTTGCCA
TCGACCTAGACCCCGTCAAGCTCGAGCATGCCCGACGCCGCGCTGCTATC
TACGGGGTCGAAAACCGGATCGAGTTCATCCTGGGGGATGCCATGGATGT
ACTCACGCCGCGCTGCTATCTACGGGGTCGAAAACCGGATCGAGTTCATC
CTGGGGGATGCCATGGATGTACTC
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