mRNA_F-serratus_M_contig955.20899.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig955.20899.1
Unique NamemRNA_F-serratus_M_contig955.20899.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig955.20899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig955contigF-serratus_M_contig955:268166..275099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size439
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig955.20899.1prot_F-serratus_M_contig955.20899.1Fucus serratus malepolypeptideF-serratus_M_contig955 268795..275099 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932723.3398187-UTR-F-serratus_M_contig955:268165..2682351622932723.3398187-UTR-F-serratus_M_contig955:268165..268235Fucus serratus maleUTRF-serratus_M_contig955 268166..268235 +
1690964441.3013232-UTR-F-serratus_M_contig955:268165..2682351690964441.3013232-UTR-F-serratus_M_contig955:268165..268235Fucus serratus maleUTRF-serratus_M_contig955 268166..268235 +
1622932723.3662488-UTR-F-serratus_M_contig955:268772..2687941622932723.3662488-UTR-F-serratus_M_contig955:268772..268794Fucus serratus maleUTRF-serratus_M_contig955 268773..268794 +
1690964441.311877-UTR-F-serratus_M_contig955:268772..2687941690964441.311877-UTR-F-serratus_M_contig955:268772..268794Fucus serratus maleUTRF-serratus_M_contig955 268773..268794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932723.3878093-CDS-F-serratus_M_contig955:268794..2688881622932723.3878093-CDS-F-serratus_M_contig955:268794..268888Fucus serratus maleCDSF-serratus_M_contig955 268795..268888 +
1690964441.3226035-CDS-F-serratus_M_contig955:268794..2688881690964441.3226035-CDS-F-serratus_M_contig955:268794..268888Fucus serratus maleCDSF-serratus_M_contig955 268795..268888 +
1622932723.4066541-CDS-F-serratus_M_contig955:269852..2699391622932723.4066541-CDS-F-serratus_M_contig955:269852..269939Fucus serratus maleCDSF-serratus_M_contig955 269853..269939 +
1690964441.334031-CDS-F-serratus_M_contig955:269852..2699391690964441.334031-CDS-F-serratus_M_contig955:269852..269939Fucus serratus maleCDSF-serratus_M_contig955 269853..269939 +
1622932723.4257479-CDS-F-serratus_M_contig955:270372..2704861622932723.4257479-CDS-F-serratus_M_contig955:270372..270486Fucus serratus maleCDSF-serratus_M_contig955 270373..270486 +
1690964441.3484857-CDS-F-serratus_M_contig955:270372..2704861690964441.3484857-CDS-F-serratus_M_contig955:270372..270486Fucus serratus maleCDSF-serratus_M_contig955 270373..270486 +
1622932723.441132-CDS-F-serratus_M_contig955:275049..2750991622932723.441132-CDS-F-serratus_M_contig955:275049..275099Fucus serratus maleCDSF-serratus_M_contig955 275050..275099 +
1690964441.358959-CDS-F-serratus_M_contig955:275049..2750991690964441.358959-CDS-F-serratus_M_contig955:275049..275099Fucus serratus maleCDSF-serratus_M_contig955 275050..275099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig955.20899.1

>prot_F-serratus_M_contig955.20899.1 ID=prot_F-serratus_M_contig955.20899.1|Name=mRNA_F-serratus_M_contig955.20899.1|organism=Fucus serratus male|type=polypeptide|length=115bp
MNLLLHLLASALLLYPNSGSFAVAGFMRSLTNTCSSDDDCYGSKVCEYTS
SSSWRGKGKCVHNNTCKEFKCSEGYELRDNCDDLTCDGDCKDDDCCDKVD
TCKDYECSSGYEYNN
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mRNA from alignment at F-serratus_M_contig955:268166..275099+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig955.20899.1 ID=mRNA_F-serratus_M_contig955.20899.1|Name=mRNA_F-serratus_M_contig955.20899.1|organism=Fucus serratus male|type=mRNA|length=6934bp|location=Sequence derived from alignment at F-serratus_M_contig955:268166..275099+ (Fucus serratus male)
TCTGACTCCGATCAGCAACCCGCCCGATTCAATCCGCTGTGAAGTTATCT
AGCTGCACACGCCACCCCACGTGAGTGATTTTATATCTCTTTTTGAGCTT
CTATTTTGTAGGATTACAGCATGTACGTGCTCCAGGTGCGGCACAGACAG
ACATACTGTTGACCCAATGTTACCGCCTATTATAGGGGAACCCGTTTAAA
TGCCACGAAGAGGTTTTGTATTTGCAGCCTTTGATCCGACGTGAATGTTT
TGACATTTTcCCCCTCTGACTGGGGGATGGTATGAAGGTCTAGGTATGTT
CTGTTTTTTCTTTAAACACCGTGCAATGTATCCTGTTTTGTAAAGTTGCT
AGACACGGCAGCGATCGTCGTGCGGTATTATATCCTCAGTCATGCCCAAC
CACAAAGAAAGTAGTCTGTAGACCACTTACCCGCCTTATATCGTGAGAGG
AAAACAGAGTCGGGTATATGCGCACCGCTCTCTCGCCCTCTCGCTTACAC
GCACAACATTCTCTGCCCGCACCAACTTTTAATCACCGCCTCGACGTCGA
CATGCACATTCTTCCGATTTTGCGTTCACGAATGCCTCCGCTACCCCATC
CTGGCAGATTTACGACAAGGACTGCCACCATGAATCTTCTCCTTCACCTC
TTAGCGTCTGCGCTTCTGCTGTATCCAAACTCCGGCAGCTTCGCGGTTGC
TGGATTTATGCGCAGCTTGACAAGTAAGACCACCTTTTTTATATATAGAG
TAGAATCGATATGCCACTTCCGAACAAAGCCAACAAAAAATCCCTGCATA
ATGCTTCGTACCGCACCAAAGAAATTGGAATGGAAACAACGCAACCACAG
CCGAAAGACCCGAGAGACCGAAGCTCTAGTTAGCGTGGCAACGATTGCAA
GGCGCTCACAACAGACTTTATCGCAAGGACAAGCAAGTTGCTGATTTTGC
CCAGAGATATTATCGGCGCCAAGGATGAGGAGGAGAGTGATTTCGTACGT
ACTAATCTTCGATTACAACTACTGTATTTTGTTAACCCTGAAACAACGCG
GTCGGATGGTTGAACTCAGTATTTCACTTGAGATAGGTCAGATGCAGCAC
GTTGATTGAGACGGTGAATCGAATGATGAGCCGTCTGCGAGAAGAGAGAT
AGCCTAGGGGAAGTTTATTCGTAGCGTTCACCTCGTTGGGCTGAGCCGCG
CCGGTTTGAACGTTGGAAAATTGCAAATTGTATCTTCCCTAACTGCCTTT
CATATGATGAGTCGATCGAGTTCTTGCTTCTTCCAGAGATCCCCCCTCCT
ACACGTACTACATCATGTATGCACAGTACGTGTGAAAGTCCCCATACTCT
TCAGCCTCGCGGTCCAACACACACACACGAGTCTACGCGCATCGCGGAGG
TGGTCAGTCCATCTTGTAGTTGTTTCGAGCAGCTGCGTAGTAGATATATT
ATGTCTCCCCAGTATCATAGCATGCGTCAGTTAGAAGCGCTTTACCATTA
GACTACTCAGTGACGTGACTTATAGTAGTCTAATTGTTAAACGCTTTTTA
ACTTACAAAATATATGTCTTCCACAGCCTTCAGCACAACATGGGCCGCAG
AAAAGCAACCCGCCGCCAGTCAAACATTAGTCTAGTGCGTTAAGTACAGC
AATAATGCTGTCGCCACTCTGCCCGATTCCGTGCCAGATACGTGCTCAAG
TGACGATGATTGCTACGGCTCGAAAGTGTGTGAGTACACCAGCAGCAGCA
GCTGGCGCGGAAAAGGAAAGTGTGGTGAGTAAGAACCCTCGATTTGAGGT
AGCGTCGTGCGGGTTGGCAGAAGGCGGATCTTCTTTTTATCCCTTGTGCC
AACTTGTTTTTTTGTTTGAAGTGTGCGTTGATGTTTTTCTGTCGCACGAA
CGGCCGAGGACGCACTTTCGAAAAGTATGACTAAAAAATCAACAAAGTTT
ATTGCCGATCTTCCCAGTGACATAACCAACCTTGGTCTAGTCTAACCATA
CATCTAGTGTTACCCCCTGTCGTGAAGCATGAAAGCGTTCTCCGTGACTA
CTAAAGCCTCTTTATCGCCTGCCGATGACGTATCGGCGTGGTAGTCAGGA
CTCGATTATTTGTAACCCTTTTCCCCCATCGTACGAAGTGAAATTTTGGT
GAGCTTGACATCTCAGCCTTTTTCTGCGAACGTAACGAAACCGTCCGCAT
CCCTCAGTTCACAACAACACCTGCAAGGAATTCAAGTGCTCCGAAGGTTA
CGAGCTGAGGGACAACTGCGACGACCTCACCTGTGACGGCGACTGCAAAG
ATGACGACTGCTGCGACAAGGGTGGGTGTTCTCTCTGTCACACTGTTGTG
CAAGATTTTCAACCATGTCCTGTCTCACGGAAATTTGAAGTTATTATGGC
TAATAATTCAACCTGCCTGTGGCCTTCCTGACTCGAAGCAAGAACGACCT
CGTTTGGATAAATTCACTTGTTCTTCTCCGCAGGGGACATTTTTTGCGTA
CCACTAGCCATGCTTCCTTGCCTTGTAGAAGCTCGCAAGTTGTTTTTGCA
ATGATTCCACAAGGAGGCTTGTATCGCTCAAGATAGTCGCCTCCAATGCG
AGCTCTTATCACAGGCGGCTTAAACCCCAAACAAACGCGTCCGACATAGC
TTATTATTCACACACAAATCCTCGTAGGTAAGGATCAATCGCAAGACCTG
TCCACCGAGTGGAATATGTCTATGAATGCATCTAAACCTTCCGAGCATCT
ACCGTCGGGGAAAAATTGTCATAATATTTTGGCAGGAAGATTATTGGCTG
TAGGGGCGAAAACTCTGTAGGGACAGTTGAGGAACGTATAGACTAATAGC
TGATCTTAGTATTATAGACAAGGTTCATTGTGATACAGGTGTTTCGAAGA
AAGAAATCTACAAGTAAGTAATAGGTAAATGATGTCCATCCATCTCACTT
TTGACTTGCTGTACTACAGTAGCTACAGAGCGAAAACCCATTCTTGACTT
ATGTTTCCCATTATTATAGTAATTCACTAATAATCGTACAATGTAGTACC
TGGTATAAAAATATGTGCGTGTTGTCATCCCATATATTTTGGACGTCAAC
CTTGTGGATGCACCAGCCGGGGTCACACAGGAGCGAGGTAAAATGATATC
TCCACATAACTTCTGCGGTGCTTGCCTTAACGATTCTCGCGCGAAGGATT
CAGCCGTCCCTTTCCCTCGTCGACAAGTCGAATTTTGTGTGCCCAGGAAT
TATTCCTTCTCCTCCTGTTGGGCATGATTATTATTTTTTTATTTCTTATT
TTTAGTGAGGAAAAATCTCAGTTGTTCGTGTGACTGCACCGAGATTCGAA
CTCATGCCCCAACGTCAGAAGGTTTCGAGGTTACGGACTGAATCACCGGG
GCAACCGGCTACAATACAACCTTTCCCCTGACTGGGGATGCTCAGAAGGT
CTAGGGACGTTCTGTCTTTTCTTTAAAAAAAATGCATAGTCTTGATAGTA
CAATACAGGATTTAACTGTACCAGTACAAATTTCAACCATTCGTCGCCCG
AGTGGTCTATTAATACTAGTAGTAGGTAACCTGCATACCTGCTAGTGCGG
AAGTCGTGCGTTCGATTCTTACCAAAGTGGGATTTGTGTTCTTTCTTTCG
TAACGGAAAGCGTGGGAACGTGAGTAAGTAAAGTTCAACCATTGGTTGAC
GAGTTGTAACAGTGCCTGAACTTGCACTCTTACTAATAGTAAAACAGATC
AGAATGGCGAGTACTTGACATTCCACTTATTTATTGATTGAATTGATTGA
TTGAATTCTCACATAAGCTGGTGTAAAAAAATTCAGCCCGTGGTCACAAG
GTAGAAAAGCACCATTCGGAAAGGAAAGAACGTACGACGTACTCTCCATA
TAATACCTGGTAGTAATTATTTTTGTCTACTGGTCAGCTTTTGTAATTTT
TTTGAATACATACATTATTATTTCCTTTTTTCGGGTGCCATATTCCGCCT
TATTTTTGTCGTCCTGAGGAACGCCCCTAGCCACCGAATCGGCCGGCAGA
TAACTTTATGGGAACGTCGACTAAAAATAACTCACGTGTGATCGATGTGA
TCGATGTGGTCGATGTACCGGTACCCTCGCTTTGAGGGGTGAAATCTAGC
TCTCTAGGTCTAGGTCTTGGTCTATATTATTAATAGCTTTCCTTTATTTT
ACCCAGGGAAGGTGCTGCAATGCACGTTGTATTTGATTGCGAGAGGGCAG
TTCGATTTCAAGACCTGACCTGTTTGAACAAAATCTCGCGCGAGATAGTA
GATATTCGCATACTGTACAGTACAGTACTCCGTATGTTTCCTTTCTATCA
AGGTTACGGTATATTTTAGCCGAGGTGGTTCTTTGTAACCGCCAGAGAAA
GAACACACGGACAAGGTGAGTACAAATGGGATAGAAACATACGACGACAG
TAAGTAGCCGAAATCAAGCGCATGTCGTTGATTTCGACGACTATATAATA
TATACTATAGATACTATGGATGAGTCAGCGCTGACTTACCAGGTCAAGGG
GTCAAGTTGATATTACGCAGTATTATTATTATTATTATTATAGATATCTG
GTCGCCCCGGTAGCTCAGAGGTACCTCGTAACCTTCTGACACGTTGGGAC
GTGAGTTCGAATCCCGGCAAACGTGATTTTCCTCACTAAAAACTAAAAAC
TAAAATAATAATGCCCAACGGGTGGAGAACGATTAAATCGTTAGTACACA
AAATTCGACTTCACGGTCGACGAGGGAAAGTAACGGCTGACTCTTTCTCG
CGATAAAAAATTAAGGCACGCACCGCAGAAGGAAGGTGGATGAGAAATCC
TGCGTGACCTTTCTCCTGTGTGACCCCGGCTGGTACGTCCATTGATGTCC
AGAATGGATGGGAAGAAAACAACAACAAAAACAAAACAGTATTTGGCTCT
CCACAAGATATTATGGTGTTTTGGATTTTGTGTTTGGAAAGCGCGATTTC
TATTTTGTTTTTTAACTATTACTTGTACCAATCTCATAAGAACGAAGTAC
TAATATATCTGTGTAGTTGCGAGCTGCCTGTCTAAGGGGTAATATCAGCT
GACTGCTGTACATCACAACAATAACATTCAGAATAAGAGCACACAGGTTT
CAATCGCAACCGAAATTAACACATCATCAGACGACCACTAGACGGCGCTG
ACGTCGAATTGATTATTTTAGCCTATAATACGTACCAGGTACGGAGCATT
GAAGACGTATGGTTTGTTCAGGACGTAAGCCAGCAGGGTACAGGCGACGT
GAACCTCTGATTCAGATGAGAGATGAGAGATGAGAGGGCGGCCGACTAGA
GACGGAGAGACGCGTCAAACATGAAACGCAAACAAAATGACGTGCGAATG
ACTACACCTGGCGCCGCCAACAATAATTATGAGTATAACACATAAAACCC
GTGAAACATGATAATTATTTAACGCAAACAACCCGAAGGCTATTATTTTT
AGTCTTAATATATACCTGGTATTATAGTAGAGCCGTGGGCCCTGTCAAGT
AGTGACGCGATGAGGATTTGTAACAACAATCGATGTGGTTGCGGTATTCC
GAGTTACGCCAGAGCGAGCGAGTAGTACTTCAAAACATGTCTTAATTCTC
CAGGTTGACGAGGTGAATAAATAGCGTCTCTCTTCAAGGTTCTATTAATA
ATATGCTGTTTATAATATAATATTACTAAAAAACTAGTCTTAGAGCTGCA
TAATATTACTATTAATTAATGCGAGCTAATAATATCAATACCTGGTAGGT
GTGATTCAACACTTTCTGTTTCAAATATAGGGCACACCACCATTTTGTGT
CTCAACCGACTTATTAAGAGACAAATTGTTGCCCTTAGCTATTACTATGT
GGAAAAGCTTCCAACAAACACTACTTGCGATCATCGATGAGACAGGAAGA
GGCTGTGTTAAGCGGTGGAAAACATTATTTGCCTTGTTATGGTAGTTTGG
CTCCCATAAAAACAAAGCGAAAACATACATTTTCACTCTGCCTTGCCATT
TATTTGTAACCTCGTCCTATTAAGTACTAGTAGTATGTGAATGAGTTTTC
CGTGATACAGCTATCATTGCGAGGTACATCTTTTTCCTGAAGGCGTACCC
TCTACAGCAGGGTACACCTTTATTACCTCTGCTGCTGGGTACACTCTTAC
AACGGGATTATTCACATAATAGTACAGTACCTAATGTCACACATACATGT
GATATATAGTGCACATAGTGTATTGACGCTGTGAAGTTACTACTGCTCAT
CAATAGTGGGTGTAGGAAAGAGAGGCGTACATTAATTGGGCCATAGTGAC
CTGCTAAGGAAGCCCTCATTCGGGACTACCTTGAGGTTTACTGGCCCCGC
GCCGACGGATTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCC
GATAAACTCGGGACTGACCCGATGGCGTATGGCGGTTTAATATAAATATA
TGGACGCCGCCGCGGAACTTGGGAGAAATCCCGTAAGTAAGCACCAGATT
CAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACTGCCGGAA
CCGTCTCGCGAGACCAAATTATTACTCTCTAAAAGGTACACGATCCCGAC
ATGCGCTCTTATCAATATCAGACGTACCATTCCGCGCTTAGTATCTCCGG
GGGGGAAAGACAATCATCGTGGTGACCCGACCCTCCTTGTTTCCAGCCGA
TGGGACATCGGCCCCGTAGGACTAATCGTTACAACAGATACTATTCGCAT
TATTACTATTACCATCTAGCCTCCTAGTGGCGTGCGTTGTCCCTTACTTT
GCCGATATTGTGAACACGCCCTCGTTCACGACAGTTGATACATGCAAAGA
CTACGAATGCTCCAGCGGCTACGAGTACAACAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig955:268166..275099+

>mRNA_F-serratus_M_contig955.20899.1 ID=mRNA_F-serratus_M_contig955.20899.1|Name=mRNA_F-serratus_M_contig955.20899.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig955:268166..275099+ (Fucus serratus male)
ATGAATCTTCTCCTTCACCTCTTAGCGTCTGCGCTTCTGCTGTATCCAAA
CTCCGGCAGCTTCGCGGTTGCTGGATTTATGCGCAGCTTGACAAATGAAT
CTTCTCCTTCACCTCTTAGCGTCTGCGCTTCTGCTGTATCCAAACTCCGG
CAGCTTCGCGGTTGCTGGATTTATGCGCAGCTTGACAAATACGTGCTCAA
GTGACGATGATTGCTACGGCTCGAAAGTGTGTGAGTACACCAGCAGCAGC
AGCTGGCGCGGAAAAGGAAAGTGTGATACGTGCTCAAGTGACGATGATTG
CTACGGCTCGAAAGTGTGTGAGTACACCAGCAGCAGCAGCTGGCGCGGAA
AAGGAAAGTGTGTTCACAACAACACCTGCAAGGAATTCAAGTGCTCCGAA
GGTTACGAGCTGAGGGACAACTGCGACGACCTCACCTGTGACGGCGACTG
CAAAGATGACGACTGCTGCGACAAGGTTCACAACAACACCTGCAAGGAAT
TCAAGTGCTCCGAAGGTTACGAGCTGAGGGACAACTGCGACGACCTCACC
TGTGACGGCGACTGCAAAGATGACGACTGCTGCGACAAGGTTGATACATG
CAAAGACTACGAATGCTCCAGCGGCTACGAGTACAACAACTTGATACATG
CAAAGACTACGAATGCTCCAGCGGCTACGAGTACAACAAC
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