mRNA_F-serratus_M_contig955.20898.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig955.20898.1
Unique NamemRNA_F-serratus_M_contig955.20898.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig955.20898.1 vs. uniprot
Match: A0A6H5L6D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D7_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 4.220e-77
Identity = 128/178 (71.91%), Postives = 144/178 (80.90%), Query Frame = 1 
Query:    1 MVRFIV-ASAVFALLLGFSTVDASKK----NIYFTVYERQSDDGPRHSPLFNLPVG-GEEGQFPSKMVLFNNDL*GSESGLINEDHGDIIGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSGSVLPSVLAVTGGTGDYAATQGEAALSAGPAEDFSSLQFDFKLKR 516
            MVRFIV AS  FALLLGF+TV+AS+     ++ FTV+ERQSDDGPRHSPLF LPV   E+ ++PSKMVLFNNDL GSE  LI+E    ++GYNQGHCVETVAS GFIAECFFTYVFDDGSLTANGPFNFDA  G VLPS LAVTGGTG+Y    G   +SAGPAE+F SLQFDFKLK+
Sbjct:    1 MVRFIVNASVAFALLLGFATVEASRGKHEGSVEFTVFERQSDDGPRHSPLFTLPVPEAEDVEYPSKMVLFNNDLYGSEDDLIDEVQDALLGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDAEDG-VLPSFLAVTGGTGEYDGALGCVEVSAGPAEEFPSLQFDFKLKK 177
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BLAST of mRNA_F-serratus_M_contig955.20898.1 vs. uniprot
Match: D8LRY1_ECTSI (Potential Allene oxide cyclase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY1_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 6.080e-54
Identity = 90/115 (78.26%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:  181 MVLFNNDL*GSESGLINEDHGDIIGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSGSVLPSVLAVTGGTGDYAATQGEAALSAGPAEDFSSLQFDFKLKRLSR 525
            MVLFNNDL GSE  LI+ED  ++IGYNQGHCVETVAS GFIAECFFTYVFDDGSLTANGPFNFD   G VLPS LAVTGGTG+Y   QG   +SAGPAE+F SLQFDFKLKR SR
Sbjct:    1 MVLFNNDLYGSEDHLIDEDQEELIGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDVEDG-VLPSFLAVTGGTGEYDGAQGCVEVSAGPAEEFPSLQFDFKLKRKSR 114
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BLAST of mRNA_F-serratus_M_contig955.20898.1 vs. uniprot
Match: A0A6N6VM22_9HYPH (Allene-oxide cyclase n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VM22_9HYPH)

HSP 1 Score: 52.0 bits (123), Expect = 3.110e-5
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = 1 
Query:  154 GEEGQFPSKMVLFNNDL*GSESGLINEDHGDIIGYNQGHCVETVASEGFIAECFFTYVFDDGSLTANGPFNFDASSGSVLPSVLAVTGGTGDYAATQGEAALSAGPAEDFSSLQFDFKL 510
            G +G     ++ F N++        ++ + + +G + G+CV TVA + +  EC +T     G +T  GPF  DA       S+LA+TGG+G+YA  +G+  L A  A+  S   F + L
Sbjct:   52 GAKGDSNGDVLTFANEV-------FDKSNKEKVGTDNGYCVRTVAGKAW--ECIWTLSLAKGQITVEGPF-LDAGD-----SMLAITGGSGEYAHARGDMLLHARNAQG-SEYDFTYNL 154
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig955.20898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L6D7_9PHAE4.220e-7771.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY1_ECTSI6.080e-5478.26Potential Allene oxide cyclase, partial n=1 Tax=Ec... [more]
A0A6N6VM22_9HYPH3.110e-531.09Allene-oxide cyclase n=1 Tax=Parvibaculum sediment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig955contigF-serratus_M_contig955:193853..195822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size528
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig955.20898.1prot_F-serratus_M_contig955.20898.1Fucus serratus malepolypeptideF-serratus_M_contig955 195616..195822 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932723.5761502-UTR-F-serratus_M_contig955:193852..1939301622932723.5761502-UTR-F-serratus_M_contig955:193852..193930Fucus serratus maleUTRF-serratus_M_contig955 193853..193930 -
1690964441.4186313-UTR-F-serratus_M_contig955:193852..1939301690964441.4186313-UTR-F-serratus_M_contig955:193852..193930Fucus serratus maleUTRF-serratus_M_contig955 193853..193930 -
1622932723.5891192-UTR-F-serratus_M_contig955:194923..1951091622932723.5891192-UTR-F-serratus_M_contig955:194923..195109Fucus serratus maleUTRF-serratus_M_contig955 194924..195109 -
1690964441.4301062-UTR-F-serratus_M_contig955:194923..1951091690964441.4301062-UTR-F-serratus_M_contig955:194923..195109Fucus serratus maleUTRF-serratus_M_contig955 194924..195109 -
1622932723.6022696-UTR-F-serratus_M_contig955:195558..1956151622932723.6022696-UTR-F-serratus_M_contig955:195558..195615Fucus serratus maleUTRF-serratus_M_contig955 195559..195615 -
1690964441.440492-UTR-F-serratus_M_contig955:195558..1956151690964441.440492-UTR-F-serratus_M_contig955:195558..195615Fucus serratus maleUTRF-serratus_M_contig955 195559..195615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932723.6193876-CDS-F-serratus_M_contig955:195615..1958221622932723.6193876-CDS-F-serratus_M_contig955:195615..195822Fucus serratus maleCDSF-serratus_M_contig955 195616..195822 -
1690964441.4511256-CDS-F-serratus_M_contig955:195615..1958221690964441.4511256-CDS-F-serratus_M_contig955:195615..195822Fucus serratus maleCDSF-serratus_M_contig955 195616..195822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig955.20898.1

>prot_F-serratus_M_contig955.20898.1 ID=prot_F-serratus_M_contig955.20898.1|Name=mRNA_F-serratus_M_contig955.20898.1|organism=Fucus serratus male|type=polypeptide|length=69bp
MVRFIVASAVFALLLGFSTVDASKKNIYFTVYERQSDDGPRHSPLFNLPV
GGEEGQFPSKMVLFNNDL*
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mRNA from alignment at F-serratus_M_contig955:193853..195822-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig955.20898.1 ID=mRNA_F-serratus_M_contig955.20898.1|Name=mRNA_F-serratus_M_contig955.20898.1|organism=Fucus serratus male|type=mRNA|length=1970bp|location=Sequence derived from alignment at F-serratus_M_contig955:193853..195822- (Fucus serratus male)
ATGGTGCGGTTCATTGTTGCATCAGCGGTATTCGCTCTTCTTCTGGGCTT
TTCGACGGTGGATGCCTCAAAGAAAAATATATATTTTACTGTCTACGAGA
GGCAGAGCGATGATGGTCCTCGCCACAGTCCGCTCTTCAATCTCCCCGTG
GGAGGTGAAGAAGGACAGTTTCCCTCCAAAATGGTGCTCTTCAACAACGA
CCTGTAGGGTTCCGAAAGTGGTCTGATCAATGAGGATCACGGCGATATTA
TCGGGTACAACCAGGTGCGCCAGTAGAACCTGAAGCTAGAGGATTGTGTA
CAATACGAAGAAAAAAACAGAAAATAAAATTGAAGCAACTATTTCGTTGG
TAGGCAGCGCTCCTAGACCTTGCGGTTCACGACGGTCTCGTATACTACAC
TGCATCCTTCCTGACCTTGACCGGTATCATTCATCACGAGACGATAAGTG
AGCCCTCTCATGAAAAACGCGATTGTTTCGTCACGGAAAACGTTCCTCGG
AAGACTCAAGCGTAAGTAGTGTAGGCTATAAACGAAATAACACGAAGCTT
GTCAGAAATTGAACTGTCAAATAAAATCGAAAACTTTTATGAACACACTA
GACAAGGGCCATGAAACATGAAAATGCAAGTACTGGAAAGTAGGTCAATA
CTCAATGAACGCCATTTTTTTTGCATCTCTTAAAACGCTGAGACCACGTT
ACTTACGTGGCAGGGTCACTGTGTCGAGACTGTGGCTTCGGAAGGTTTCA
TCGCCGAATGCTTCTTCACGTACGTGTTCGACGACGGCTCGCTCACGGCG
AACGGTCCGTTCAACTTCGATGCCAGTTCTGGGAGCGTTCTTCCCTCTGT
ACTAGCCGTCACTGGGGGCACCGGGGATTACGCTGCTACCCAGGGAGAGG
TGGATAACCAGGGTTACACCCTCACGTTGGTTGATCGTTGTTGAAAGCTA
TATCAAAAACATTGCTGAGCAAATCGTTGCGTACAAGAAAAGGAGTTTCC
TTTCATCTGACATGGCCCACGGCTCAACCTCCTCTATCCTAATCCGAAAC
ATAAACAGACTGCCTTCGTCGCCCCCTCTAAGTGGCTTCTGTCGATGTCT
ATGTTGATATCTTGATAGGAATACTCTTACGCAGTTTGGTCGGAGGTTTC
CGACCGATGAAAACCTATTATAGCCAGTAAATCCGGCAATCAATGGTCAT
TGGGACACTCGTGCGTCGCATTCCAACGTCTGGAGTTTACCGCTGTCGAC
ACACGTCAGTTCGAAAACTTGCGCGTTACTCGACAAAATCTGGCGGACGG
CACATATAACGACCCTGTAGATATGAACCAACGACTGCATGACACTCGAA
ATATGTCGGTGCCGTGCCCGAGATACCACCGTGAGGTCGATAGTACCTCT
GGGTAATACGACGGGGGCGATAATTTTGGAGGCAAAGCTTATGAATAGAT
ATCTAGGGTACCGTGTGGCACTCAAGAAATTCACGAGATTTGATCGTGAC
ACTTGCTCCTGGTGTCCCAAAACACCCATGCTCGATAACACGATTAAAGG
TCCATGACCCCAGGTAGGACCGGCTTGGGTAGATAGGAACGAGTTTACCT
GCAAGTCGCCGCAAATCAGTGTTTGTAAAGCACCAGCCGGTTTTGACGTT
CCTTGGCTGGAAATCGAACCCAGGGGCCTTCCGAGCGCTTAACGTAGCTT
ATCTAAGATATCCGCTCTTGAAATAGTAGATTTCTCTGGGGTGAAAGGTG
TGTGTAGTAATTAGAATATACCTCGTACGTTTTCCTTTCGGTTTAGTATA
TTATTTTGGCTCTTCACCTGTTACAACTCCTGTAAATCCAGCCTGTAACA
GTTCACAACAAGGCCTAACCTAATGTCCCCTCCTGCTGACAGGCTGCTCT
GTCTGCCGGACCTGCCGAAGACTTCTCATCCTTGCAGTTCGACTTCAAGC
TCAAGAGGCTTTCAAGGAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig955:193853..195822-

>mRNA_F-serratus_M_contig955.20898.1 ID=mRNA_F-serratus_M_contig955.20898.1|Name=mRNA_F-serratus_M_contig955.20898.1|organism=Fucus serratus male|type=CDS|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig955:193853..195822- (Fucus serratus male)
ATGGTGCGGTTCATTGTTGCATCAGCGGTATTCGCTCTTCTTCTGGGCTT
TTCGACGGTGGATGCCTCAAAGAAAAATATATATTTTACTGTCTACGAGA
GGCAGAGCGATGATGGTCCTCGCCACAGTCCGCTCTTCAATCTCCCCGTG
GGAGGTGAAGAAGGACAGTTTCCCTCCAAAATGGTGCTCTTCAACAACGA
CCTGTAGATGGTGCGGTTCATTGTTGCATCAGCGGTATTCGCTCTTCTTC
TGGGCTTTTCGACGGTGGATGCCTCAAAGAAAAATATATATTTTACTGTC
TACGAGAGGCAGAGCGATGATGGTCCTCGCCACAGTCCGCTCTTCAATCT
CCCCGTGGGAGGTGAAGAAGGACAGTTTCCCTCCAAAATGGTGCTCTTCA
ACAACGACCTGTAG
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