mRNA_F-serratus_M_contig953.20896.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig953.20896.1
Unique NamemRNA_F-serratus_M_contig953.20896.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig953.20896.1 vs. uniprot
Match: A0A6H5L267_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L267_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.450e-11
Identity = 27/63 (42.86%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    7 VDILGDNRGSKAITNSPSNASKSKNIDVKFHFTQGLVRAGEVRILYVGLKDQHADILTKALWR 195
            + +L DN+G+ A+  +P ++ ++K+IDV++HF +GL  +G++ + +V  K+QHAD+LTKAL R
Sbjct:  150 IQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFGSGDIAVKFVPTKEQHADLLTKALSR 212
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BLAST of mRNA_F-serratus_M_contig953.20896.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.000e-11
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    7 VDILGDNRGSKAITNSPSNASKSKNIDVKFHFTQGLVRAGEVRILYVGLKDQHADILTKALWR 195
            +D+L DN G+ A+  +P ++S+SK+IDV+ HF + L   G + + +V  K+QHADILTKAL R
Sbjct:  181 IDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPR 243
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BLAST of mRNA_F-serratus_M_contig953.20896.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.030e-11
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    7 VDILGDNRGSKAITNSPSNASKSKNIDVKFHFTQGLVRAGEVRILYVGLKDQHADILTKALWR 195
            +D+L DN G+ A+  +P ++S+SK+IDV+ HF + L   G + + +V  K+QHADILTKAL R
Sbjct: 1114 IDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPR 1176
[Close]
BLAST of mRNA_F-serratus_M_contig953.20896.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.040e-11
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    7 VDILGDNRGSKAITNSPSNASKSKNIDVKFHFTQGLVRAGEVRILYVGLKDQHADILTKALWR 195
            +D+L DN G+ A+  +P ++S+SK+IDV+ HF + L   G + + +V  K+QHADILTKAL R
Sbjct: 1324 IDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPR 1386
[Close]
BLAST of mRNA_F-serratus_M_contig953.20896.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.310e-10
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    7 VDILGDNRGSKAITNSPSNASKSKNIDVKFHFTQGLVRAGEVRILYVGLKDQHADILTKALWR 195
            +D+  DN G+ A+  +P ++S+SK+IDV+ HF + L   G + + +V  K+QHADILTKAL R
Sbjct:  308 IDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPR 370
[Close]
BLAST of mRNA_F-serratus_M_contig953.20896.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.390e-10
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    7 VDILGDNRGSKAITNSPSNASKSKNIDVKFHFTQGLVRAGEVRILYVGLKDQHADILTKALWR 195
            +D+  DN G+ A+  +P ++S+SK+IDV+ HF + L   G + + +V  K+QHADILTKAL R
Sbjct:  648 IDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPR 710
[Close]
BLAST of mRNA_F-serratus_M_contig953.20896.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.400e-10
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    7 VDILGDNRGSKAITNSPSNASKSKNIDVKFHFTQGLVRAGEVRILYVGLKDQHADILTKALWR 195
            +D+  DN G+ A+  +P ++S+SK+IDV+ HF + L   G + + +V  K+QHADILTKAL R
Sbjct:  475 IDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPR 537
[Close]
BLAST of mRNA_F-serratus_M_contig953.20896.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.410e-10
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    7 VDILGDNRGSKAITNSPSNASKSKNIDVKFHFTQGLVRAGEVRILYVGLKDQHADILTKALWR 195
            +D+  DN G+ A+  +P ++S+SK+IDV+ HF + L   G + + +V  K+QHADILTKAL R
Sbjct: 1203 IDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPR 1265
[Close]
BLAST of mRNA_F-serratus_M_contig953.20896.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.220e-10
Identity = 28/64 (43.75%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    7 VDILGDNRGSKAITNSPSNASKSKNIDVKFHFTQGLVRAGEVRILYVGLKDQHADILTKALWRK 198
            + +L DN G+ A+ ++P ++ + K+IDV+ HF + L   G ++I +V  K+QHADILTKAL R+
Sbjct:  156 IKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRE 219
[Close]
BLAST of mRNA_F-serratus_M_contig953.20896.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.850e-10
Identity = 28/64 (43.75%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    7 VDILGDNRGSKAITNSPSNASKSKNIDVKFHFTQGLVRAGEVRILYVGLKDQHADILTKALWRK 198
            + +L DN G+ A+ ++P ++ + K+IDV+ HF + L   G ++I +V  K+QHADILTKAL R+
Sbjct:  602 IKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRE 665
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig953.20896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L267_9PHAE1.450e-1142.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCG6_9PHAE2.000e-1147.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3I1_9PHAE4.030e-1147.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE4.040e-1147.62Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRE7_9PHAE1.310e-1046.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE1.390e-1046.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE1.400e-1046.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE1.410e-1046.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW47_9PHAE2.220e-1043.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV1_9PHAE4.850e-1043.75Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig953contigF-serratus_M_contig953:303816..304013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932723.291121-CDS-F-serratus_M_contig953:303815..3040131622932723.291121-CDS-F-serratus_M_contig953:303815..304013Fucus serratus maleCDSF-serratus_M_contig953 303816..304013 +
1690964441.2910936-CDS-F-serratus_M_contig953:303815..3040131690964441.2910936-CDS-F-serratus_M_contig953:303815..304013Fucus serratus maleCDSF-serratus_M_contig953 303816..304013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig953.20896.1prot_F-serratus_M_contig953.20896.1Fucus serratus malepolypeptideF-serratus_M_contig953 303816..304013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig953.20896.1

>prot_F-serratus_M_contig953.20896.1 ID=prot_F-serratus_M_contig953.20896.1|Name=mRNA_F-serratus_M_contig953.20896.1|organism=Fucus serratus male|type=polypeptide|length=66bp
MYVDILGDNRGSKAITNSPSNASKSKNIDVKFHFTQGLVRAGEVRILYVG
LKDQHADILTKALWRK
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mRNA from alignment at F-serratus_M_contig953:303816..304013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig953.20896.1 ID=mRNA_F-serratus_M_contig953.20896.1|Name=mRNA_F-serratus_M_contig953.20896.1|organism=Fucus serratus male|type=mRNA|length=198bp|location=Sequence derived from alignment at F-serratus_M_contig953:303816..304013+ (Fucus serratus male)
ATGTATGTTGATATACTTGGAGACAATCGGGGTTCAAAGGCAATCACGAA
CAGCCCAAGCAATGCGTCAAAGAGTAAGAACATTGATGTAAAGTTTCACT
TCACTCAAGGACTTGTGCGTGCAGGAGAGGTTCGGATCCTCTATGTAGGT
TTGAAGGATCAACACGCGGATATTCTTACGAAAGCACTATGGCGTAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig953:303816..304013+

>mRNA_F-serratus_M_contig953.20896.1 ID=mRNA_F-serratus_M_contig953.20896.1|Name=mRNA_F-serratus_M_contig953.20896.1|organism=Fucus serratus male|type=CDS|length=396bp|location=Sequence derived from alignment at F-serratus_M_contig953:303816..304013+ (Fucus serratus male)
ATGTATGTTGATATACTTGGAGACAATCGGGGTTCAAAGGCAATCACGAA
CAGCCCAAGCAATGCGTCAAAGAGTAAGAACATTGATGTAAAGTTTCACT
TCACTCAAGGACTTGTGCGTGCAGGAGAGGTTCGGATCCTCTATGTAGGT
TTGAAGGATCAACACGCGGATATTCTTACGAAAGCACTATGGCGTAAGAT
GTATGTTGATATACTTGGAGACAATCGGGGTTCAAAGGCAATCACGAACA
GCCCAAGCAATGCGTCAAAGAGTAAGAACATTGATGTAAAGTTTCACTTC
ACTCAAGGACTTGTGCGTGCAGGAGAGGTTCGGATCCTCTATGTAGGTTT
GAAGGATCAACACGCGGATATTCTTACGAAAGCACTATGGCGTAAG
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