mRNA_F-serratus_M_contig953.20893.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig953.20893.1
Unique NamemRNA_F-serratus_M_contig953.20893.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig953.20893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig953contigF-serratus_M_contig953:14562..14908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size253
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig953.20893.1prot_F-serratus_M_contig953.20893.1Fucus serratus malepolypeptideF-serratus_M_contig953 14571..14838 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932722.9744742-UTR-F-serratus_M_contig953:14561..145701622932722.9744742-UTR-F-serratus_M_contig953:14561..14570Fucus serratus maleUTRF-serratus_M_contig953 14562..14570 -
1690964441.148121-UTR-F-serratus_M_contig953:14561..145701690964441.148121-UTR-F-serratus_M_contig953:14561..14570Fucus serratus maleUTRF-serratus_M_contig953 14562..14570 -
1622932723.0503416-UTR-F-serratus_M_contig953:14838..149081622932723.0503416-UTR-F-serratus_M_contig953:14838..14908Fucus serratus maleUTRF-serratus_M_contig953 14839..14908 -
1690964441.1970098-UTR-F-serratus_M_contig953:14838..149081690964441.1970098-UTR-F-serratus_M_contig953:14838..14908Fucus serratus maleUTRF-serratus_M_contig953 14839..14908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932722.994397-CDS-F-serratus_M_contig953:14570..146391622932722.994397-CDS-F-serratus_M_contig953:14570..14639Fucus serratus maleCDSF-serratus_M_contig953 14571..14639 -
1690964441.1603289-CDS-F-serratus_M_contig953:14570..146391690964441.1603289-CDS-F-serratus_M_contig953:14570..14639Fucus serratus maleCDSF-serratus_M_contig953 14571..14639 -
1622932723.0100026-CDS-F-serratus_M_contig953:14661..146911622932723.0100026-CDS-F-serratus_M_contig953:14661..14691Fucus serratus maleCDSF-serratus_M_contig953 14662..14691 -
1690964441.1775746-CDS-F-serratus_M_contig953:14661..146911690964441.1775746-CDS-F-serratus_M_contig953:14661..14691Fucus serratus maleCDSF-serratus_M_contig953 14662..14691 -
1622932723.0278988-CDS-F-serratus_M_contig953:14763..148381622932723.0278988-CDS-F-serratus_M_contig953:14763..14838Fucus serratus maleCDSF-serratus_M_contig953 14764..14838 -
1690964441.1875699-CDS-F-serratus_M_contig953:14763..148381690964441.1875699-CDS-F-serratus_M_contig953:14763..14838Fucus serratus maleCDSF-serratus_M_contig953 14764..14838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig953.20893.1

>prot_F-serratus_M_contig953.20893.1 ID=prot_F-serratus_M_contig953.20893.1|Name=mRNA_F-serratus_M_contig953.20893.1|organism=Fucus serratus male|type=polypeptide|length=58bp
MRGHREGENSPKERPQASEEKEEVVPSKLADRQKVGRTRRAQIGGKTTPF
KQTTRRT*
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mRNA from alignment at F-serratus_M_contig953:14562..14908-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig953.20893.1 ID=mRNA_F-serratus_M_contig953.20893.1|Name=mRNA_F-serratus_M_contig953.20893.1|organism=Fucus serratus male|type=mRNA|length=347bp|location=Sequence derived from alignment at F-serratus_M_contig953:14562..14908- (Fucus serratus male)
GATTCTCAAGACTCGTTATCAGCTTCCAGCGCCCACAACCTCACCGAGAG
TAGTGCAGCCCGATGATCAGATGAGGGGACATCGGGAAGGGGAGAACAGC
CCAAAGGAGCGACCACAAGCCTCGGAGGAAAAGGAAGAGGTGGTTGTAAA
CCGCACCTCGAGCACGGACGAGGCGGGAAATTGTATTTCCCCAACCAAGG
TCGAGACCGACCACGAGCCATCAAAACTCGCCGATCGCCAAAAAGTGGTA
ATTTTTCGGCAACAAAAAGGGACGAACGCGAAGAGCACAGATTGGGGGGA
AAACAACCCCATTCAAGCAGACTACGCGGAGAACATGAATACACCTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig953:14562..14908-

>mRNA_F-serratus_M_contig953.20893.1 ID=mRNA_F-serratus_M_contig953.20893.1|Name=mRNA_F-serratus_M_contig953.20893.1|organism=Fucus serratus male|type=CDS|length=348bp|location=Sequence derived from alignment at F-serratus_M_contig953:14562..14908- (Fucus serratus male)
ATGAGGGGACATCGGGAAGGGGAGAACAGCCCAAAGGAGCGACCACAAGC
CTCGGAGGAAAAGGAAGAGGTGGTTATGAGGGGACATCGGGAAGGGGAGA
ACAGCCCAAAGGAGCGACCACAAGCCTCGGAGGAAAAGGAAGAGGTGGTT
CCATCAAAACTCGCCGATCGCCAAAAAGTGCCATCAAAACTCGCCGATCG
CCAAAAAGTGGGACGAACGCGAAGAGCACAGATTGGGGGGAAAACAACCC
CATTCAAGCAGACTACGCGGAGAACATGAGGACGAACGCGAAGAGCACAG
ATTGGGGGGAAAACAACCCCATTCAAGCAGACTACGCGGAGAACATGA
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