mRNA_F-serratus_M_contig950.20872.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig950.20872.1
Unique NamemRNA_F-serratus_M_contig950.20872.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig950.20872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig950contigF-serratus_M_contig950:224238..224833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932717.7450802-CDS-F-serratus_M_contig950:224237..2245521622932717.7450802-CDS-F-serratus_M_contig950:224237..224552Fucus serratus maleCDSF-serratus_M_contig950 224238..224552 +
1690964438.4095192-CDS-F-serratus_M_contig950:224237..2245521690964438.4095192-CDS-F-serratus_M_contig950:224237..224552Fucus serratus maleCDSF-serratus_M_contig950 224238..224552 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932717.7741268-UTR-F-serratus_M_contig950:224552..2248331622932717.7741268-UTR-F-serratus_M_contig950:224552..224833Fucus serratus maleUTRF-serratus_M_contig950 224553..224833 +
1690964438.4214885-UTR-F-serratus_M_contig950:224552..2248331690964438.4214885-UTR-F-serratus_M_contig950:224552..224833Fucus serratus maleUTRF-serratus_M_contig950 224553..224833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig950.20872.1prot_F-serratus_M_contig950.20872.1Fucus serratus malepolypeptideF-serratus_M_contig950 224238..224552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig950.20872.1

>prot_F-serratus_M_contig950.20872.1 ID=prot_F-serratus_M_contig950.20872.1|Name=mRNA_F-serratus_M_contig950.20872.1|organism=Fucus serratus male|type=polypeptide|length=105bp
QIQPECGDEQADAGRDCRNQDQIFRHERGQGNIYFPCSTDNEKDWQPYPV
DPYSCYMCDNTCRDNYSSHNQALPHKKVLSLRCCVTAFTRKENLCADTRI
LLTH*
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mRNA from alignment at F-serratus_M_contig950:224238..224833+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig950.20872.1 ID=mRNA_F-serratus_M_contig950.20872.1|Name=mRNA_F-serratus_M_contig950.20872.1|organism=Fucus serratus male|type=mRNA|length=596bp|location=Sequence derived from alignment at F-serratus_M_contig950:224238..224833+ (Fucus serratus male)
CAGATTCAGCCTGAGTGTGGAGATGAGCAGGCTGACGCGGGACGGGACTG
CCGAAATCAAGACCAAATTTTCAGGCACGAACGCGGACAGGGGAATATTT
ATTTTCCCTGTTCAACTGACAACGAGAAGGATTGGCAACCTTACCCGGTT
GATCCATACTCTTGCTATATGTGTGACAATACATGCAGGGATAACTACTC
GTCACATAACCAAGCGCTGCCACACAAAAAAGTTTTAAGCCTCCGCTGTT
GCGTTACTGCCTTTACGCGTAAAGAGAACTTGTGCGCCGACACGAGAATA
CTTTTAACGCATTAATACTTGAAACGGCCCCAAGGCGGTCCAAGGTGTGC
CAAGCGACAAGCGGGTTGCATCCCGACCAACCAAACACATTCCGTGCACG
ACGCATAGCCGACATAATCATTGCCGTAAGTCAAACGATGTATGGcgtGT
AAAATtagTGGGTTTCGCGCTGCAGCTGTAGCTGTTCACGTTAACAatAT
ACCAGGTAGTATACTGTAACGAGATAGTTTCCGAATAAATAAGCAGTGCG
AAACACGGTTTCGCTTGAGCTGCTTCACAACCCCCCCCCCCCCACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig950:224238..224833+

>mRNA_F-serratus_M_contig950.20872.1 ID=mRNA_F-serratus_M_contig950.20872.1|Name=mRNA_F-serratus_M_contig950.20872.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig950:224238..224833+ (Fucus serratus male)
CAGATTCAGCCTGAGTGTGGAGATGAGCAGGCTGACGCGGGACGGGACTG
CCGAAATCAAGACCAAATTTTCAGGCACGAACGCGGACAGGGGAATATTT
ATTTTCCCTGTTCAACTGACAACGAGAAGGATTGGCAACCTTACCCGGTT
GATCCATACTCTTGCTATATGTGTGACAATACATGCAGGGATAACTACTC
GTCACATAACCAAGCGCTGCCACACAAAAAAGTTTTAAGCCTCCGCTGTT
GCGTTACTGCCTTTACGCGTAAAGAGAACTTGTGCGCCGACACGAGAATA
CTTTTAACGCATTAACAGATTCAGCCTGAGTGTGGAGATGAGCAGGCTGA
CGCGGGACGGGACTGCCGAAATCAAGACCAAATTTTCAGGCACGAACGCG
GACAGGGGAATATTTATTTTCCCTGTTCAACTGACAACGAGAAGGATTGG
CAACCTTACCCGGTTGATCCATACTCTTGCTATATGTGTGACAATACATG
CAGGGATAACTACTCGTCACATAACCAAGCGCTGCCACACAAAAAAGTTT
TAAGCCTCCGCTGTTGCGTTACTGCCTTTACGCGTAAAGAGAACTTGTGC
GCCGACACGAGAATACTTTTAACGCATTAA
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