mRNA_F-serratus_M_contig950.20869.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig950.20869.1
Unique NamemRNA_F-serratus_M_contig950.20869.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig950.20869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig950contigF-serratus_M_contig950:127099..128341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size847
Cds size843
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932717.3782246-CDS-F-serratus_M_contig950:127098..1272691622932717.3782246-CDS-F-serratus_M_contig950:127098..127269Fucus serratus maleCDSF-serratus_M_contig950 127099..127269 +
1690964438.2731934-CDS-F-serratus_M_contig950:127098..1272691690964438.2731934-CDS-F-serratus_M_contig950:127098..127269Fucus serratus maleCDSF-serratus_M_contig950 127099..127269 +
1622932717.410402-CDS-F-serratus_M_contig950:127667..1283391622932717.410402-CDS-F-serratus_M_contig950:127667..128339Fucus serratus maleCDSF-serratus_M_contig950 127668..128339 +
1690964438.2832148-CDS-F-serratus_M_contig950:127667..1283391690964438.2832148-CDS-F-serratus_M_contig950:127667..128339Fucus serratus maleCDSF-serratus_M_contig950 127668..128339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig950.20869.1prot_F-serratus_M_contig950.20869.1Fucus serratus malepolypeptideF-serratus_M_contig950 127099..128339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig950.20869.1

>prot_F-serratus_M_contig950.20869.1 ID=prot_F-serratus_M_contig950.20869.1|Name=mRNA_F-serratus_M_contig950.20869.1|organism=Fucus serratus male|type=polypeptide|length=281bp
VEGVVAAVEAVKSSLGDNVDDRLEIQCSAPTAGIWSRCGASCKQHRFKRD
GCTGPHEVRSCDTGELCPSAREGIYADITFKLHFHAAAIVAPWTDEERSR
LLVADAMGEALGARLHDACQIGPGNVEVALLSAGSGDGAGESSRRESNND
RGGSMTVSASVHVADSTAATVPTSMRFELDNRCITTLGDPAIASDLTPAV
ARELGEMAEISTSAEALAKLIEIVQVGGFSLRSASSGARTIDNVTPSDWG
ASNNTVRSHYSQYPTSPDLRRSPGSPFLSIS
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mRNA from alignment at F-serratus_M_contig950:127099..128341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig950.20869.1 ID=mRNA_F-serratus_M_contig950.20869.1|Name=mRNA_F-serratus_M_contig950.20869.1|organism=Fucus serratus male|type=mRNA|length=1243bp|location=Sequence derived from alignment at F-serratus_M_contig950:127099..128341+ (Fucus serratus male)
GTGGAGGGTGTAGTTGCGGCCGTTGAAGCCGTGAAGAGTAGTTTGGGGGA
CAATGTTGACGACCGCCTGGAGATACAATGTTCGGCGCCGACTGCGGGGA
TTTGGAGTCGCTGCGGAGCGTCCTGTAAACAACACAGGTTCAAGCGGGAC
GGATGCACCGGACCTCACGAGGTGAGACGCTTTTTGTGATGGTTGTGTCC
CCGACGATTTCTTCATTTTCTCTCTTATTGAAATCCTTTGCGGTTGAGTT
ATTTGATGGCGGCTACGTTTTGCTATTAATACCGCTAAGGCGAGGGGTAC
TACGAGACATCGACGGCATTTGTTCGCATTTCTGTTTTATGTGCAAGAAA
TATTGTTTCGAACTAAATCTTCTGACGCATGTTGTGAATGGATGACGGAG
AGGTGGAGCTGACGACTAGGTGGGTAGGCCAGATAAGGCTGCCCTCGAGT
CTATCTCATGTATCCGGCCTACGATGAACGGCGACATTAATCTCTCCACC
TGTCTTTGTTTGTTCGGCGTATATTGTTTGCGATATCGCCTCGCGCAAAA
CGTTGCCTTGTACCATCAGGTGAGAAGCTGTGATACGGGTGAACTTTGCC
CTTCCGCCAGAGAAGGCATCTACGCCGACATCACATTCAAGCTTCACTTC
CACGCCGCCGCTATCGTGGCACCCTGGACGGACGAGGAGCGTTCGAGGCT
CCTCGTCGCAGATGCCATGGGGGAGGCCTTGGGAGCGCGACTGCACGATG
CGTGTCAGATAGGCCCCGGAAACGTTGAAGTAGCTTTGCTGTCAGCAGGC
AGCGGTGACGGCGCTGGCGAATCAAGCAGACGCGAGAGCAACAACGACCG
CGGTGGCAGCATGACGGTGTCGGCTTCGGTGCACGTGGCGGACTCCACCG
CCGCAACAGTTCCTACTTCGATGCGGTTTGAGCTTGACAACCGCTGCATT
ACCACTCTCGGCGATCCGGCGATAGCGTCCGATCTGACGCCGGCCGTGGC
GAGGGAGCTGGGCGAGATGGCTGAGATCTCAACTTCCGCGGAGGCGCTTG
CTAAACTTATTGAGATCGTTCAGGTCGGCGGGTTTTCCTTGCGCTCGGCG
TCAAGTGGCGCCCGAACGATTGACAACGTTACTCCCAGCGATTGGGGCGC
GAGCAATAACACTGTTCGTTCTCATTATTCCCAATATCCTACGAGTCCCG
ATCTGCGGCGATCGCCGGGGTCGCCATTCTTGTCAATTTCTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig950:127099..128341+

>mRNA_F-serratus_M_contig950.20869.1 ID=mRNA_F-serratus_M_contig950.20869.1|Name=mRNA_F-serratus_M_contig950.20869.1|organism=Fucus serratus male|type=CDS|length=1686bp|location=Sequence derived from alignment at F-serratus_M_contig950:127099..128341+ (Fucus serratus male)
GTGGAGGGTGTAGTTGCGGCCGTTGAAGCCGTGAAGAGTAGTTTGGGGGA
CAATGTTGACGACCGCCTGGAGATACAATGTTCGGCGCCGACTGCGGGGA
TTTGGAGTCGCTGCGGAGCGTCCTGTAAACAACACAGGTTCAAGCGGGAC
GGATGCACCGGACCTCACGAGGTGGAGGGTGTAGTTGCGGCCGTTGAAGC
CGTGAAGAGTAGTTTGGGGGACAATGTTGACGACCGCCTGGAGATACAAT
GTTCGGCGCCGACTGCGGGGATTTGGAGTCGCTGCGGAGCGTCCTGTAAA
CAACACAGGTTCAAGCGGGACGGATGCACCGGACCTCACGAGGTGAGAAG
CTGTGATACGGGTGAACTTTGCCCTTCCGCCAGAGAAGGCATCTACGCCG
ACATCACATTCAAGCTTCACTTCCACGCCGCCGCTATCGTGGCACCCTGG
ACGGACGAGGAGCGTTCGAGGCTCCTCGTCGCAGATGCCATGGGGGAGGC
CTTGGGAGCGCGACTGCACGATGCGTGTCAGATAGGCCCCGGAAACGTTG
AAGTAGCTTTGCTGTCAGCAGGCAGCGGTGACGGCGCTGGCGAATCAAGC
AGACGCGAGAGCAACAACGACCGCGGTGGCAGCATGACGGTGTCGGCTTC
GGTGCACGTGGCGGACTCCACCGCCGCAACAGTTCCTACTTCGATGCGGT
TTGAGCTTGACAACCGCTGCATTACCACTCTCGGCGATCCGGCGATAGCG
TCCGATCTGACGCCGGCCGTGGCGAGGGAGCTGGGCGAGATGGCTGAGAT
CTCAACTTCCGCGGAGGCGCTTGCTAAACTTATTGAGATCGTTCAGGTCG
GCGGGTTTTCCTTGCGCTCGGCGTCAAGTGGCGCCCGAACGATTGACAAC
GTTACTCCCAGCGATTGGGGCGCGAGCAATAACACTGTTCGTTCTCATTA
TTCCCAATATCCTACGAGTCCCGATCTGCGGCGATCGCCGGGGTCGCCAT
TCTTGTCAATTTCTGTGAGAAGCTGTGATACGGGTGAACTTTGCCCTTCC
GCCAGAGAAGGCATCTACGCCGACATCACATTCAAGCTTCACTTCCACGC
CGCCGCTATCGTGGCACCCTGGACGGACGAGGAGCGTTCGAGGCTCCTCG
TCGCAGATGCCATGGGGGAGGCCTTGGGAGCGCGACTGCACGATGCGTGT
CAGATAGGCCCCGGAAACGTTGAAGTAGCTTTGCTGTCAGCAGGCAGCGG
TGACGGCGCTGGCGAATCAAGCAGACGCGAGAGCAACAACGACCGCGGTG
GCAGCATGACGGTGTCGGCTTCGGTGCACGTGGCGGACTCCACCGCCGCA
ACAGTTCCTACTTCGATGCGGTTTGAGCTTGACAACCGCTGCATTACCAC
TCTCGGCGATCCGGCGATAGCGTCCGATCTGACGCCGGCCGTGGCGAGGG
AGCTGGGCGAGATGGCTGAGATCTCAACTTCCGCGGAGGCGCTTGCTAAA
CTTATTGAGATCGTTCAGGTCGGCGGGTTTTCCTTGCGCTCGGCGTCAAG
TGGCGCCCGAACGATTGACAACGTTACTCCCAGCGATTGGGGCGCGAGCA
ATAACACTGTTCGTTCTCATTATTCCCAATATCCTACGAGTCCCGATCTG
CGGCGATCGCCGGGGTCGCCATTCTTGTCAATTTCT
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