mRNA_F-serratus_M_contig950.20867.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig950.20867.1
Unique NamemRNA_F-serratus_M_contig950.20867.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig950.20867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig950contigF-serratus_M_contig950:99740..102795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size276
Cds size162
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig950.20867.1prot_F-serratus_M_contig950.20867.1Fucus serratus malepolypeptideF-serratus_M_contig950 99740..102682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932717.288089-CDS-F-serratus_M_contig950:99739..998291622932717.288089-CDS-F-serratus_M_contig950:99739..99829Fucus serratus maleCDSF-serratus_M_contig950 99740..99829 +
1690964438.2317486-CDS-F-serratus_M_contig950:99739..998291690964438.2317486-CDS-F-serratus_M_contig950:99739..99829Fucus serratus maleCDSF-serratus_M_contig950 99740..99829 +
1622932717.3055322-CDS-F-serratus_M_contig950:102610..1026821622932717.3055322-CDS-F-serratus_M_contig950:102610..102682Fucus serratus maleCDSF-serratus_M_contig950 102611..102682 +
1690964438.2434664-CDS-F-serratus_M_contig950:102610..1026821690964438.2434664-CDS-F-serratus_M_contig950:102610..102682Fucus serratus maleCDSF-serratus_M_contig950 102611..102682 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932717.3232055-UTR-F-serratus_M_contig950:102682..1027951622932717.3232055-UTR-F-serratus_M_contig950:102682..102795Fucus serratus maleUTRF-serratus_M_contig950 102683..102795 +
1690964438.2610817-UTR-F-serratus_M_contig950:102682..1027951690964438.2610817-UTR-F-serratus_M_contig950:102682..102795Fucus serratus maleUTRF-serratus_M_contig950 102683..102795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig950.20867.1

>prot_F-serratus_M_contig950.20867.1 ID=prot_F-serratus_M_contig950.20867.1|Name=mRNA_F-serratus_M_contig950.20867.1|organism=Fucus serratus male|type=polypeptide|length=54bp
TKAYVESKTWRLGCRISNYSVLNGSSRLIVKWLKTGSRECAHGGLFTYNG
AVL*
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mRNA from alignment at F-serratus_M_contig950:99740..102795+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig950.20867.1 ID=mRNA_F-serratus_M_contig950.20867.1|Name=mRNA_F-serratus_M_contig950.20867.1|organism=Fucus serratus male|type=mRNA|length=3056bp|location=Sequence derived from alignment at F-serratus_M_contig950:99740..102795+ (Fucus serratus male)
ACAAAAGCTTATGTTGAATCAAAAACTTGGAGGCTTGGATGCAGGATCTC
GAATTATTCAGTGCTGAACGGAAGCTCTAGGCTTATTGTGGTGAGTGCAT
ACACTTCGGCAAAAACTCATGCCGTATTCGGGCCACAGTGTCTGATTATC
GTCCATAACCTGCGCAGCTGTGATTCGACAGTATCATCAGTCGACGATAC
CAGTACGATAGTTTTCAGGAAGCACAGGATAAGAACCCAGCTCACCCAGA
TCCCGTCCATCCGGGCATGAACAATGCAAATGGCACGATTACTCTTGCAG
GACAAGTGGCATACTGTCCCAATATTATCTTCTGTGTAACGAAAACATTA
GTACCTGTGTTACAACTGTCGCTGCGGTACAGGTACCGTAATGTAGTCGG
ACCTCGGTACGAGTACACTCTAGCGCTGTGTGCGTGAAGCTTCATCCTCC
CATTTATCGACTGGGCCCAAAAATTACCCACTTCCATTGTATTGATTCAT
ACTTTCAGCGTAATGCCATTGCAGATGTAGTACCATCTGTGACACAGCCC
TTTTAGCTGCACCTCTCCAATCATTTTCCCTCTTGAGGTCTTGATGAGCC
GAGAAGGTCAAGGGGTCACAGCTGCAGAAAGTCGGTGACACCCAGCTGAG
CACACGCCCAGGGACCTGGAATTGCTACGTACACAGTATGTTTGTACATG
TAGTGACTGCATGTTCACGATCCGGGAACAGCTGAAACCCTACCCGTGTC
ACGACGACATTCTTGAGTGCGAACGACATCGGCCTTGGCCCGTTGACCTC
CGTAACTCTTTGAGACCACTAGTGGGAATGGCGTCTGATGGGGTGGGGCT
GACTATTTATCTCGCCGTATGTATCACGTGATATGCATAGTCACATATAT
TATAAGCAAATGACAAAACTCTGATGAAGTCCGAATCAATCAATCAATCG
ACTACTGTGGTACTCTCAACGCCTATACCATTATTATGTGTGGGAAAGAG
AGGCGCATATCAATTGGTCCATGGTGACCTGCCAAGGCAGCTCTTGTTCG
GAACTACCTTGAAGTTTACTGGCGTTGTGCCCGCGGAGGGTGGGGCTGAC
TATTTATCTCGCCATATGCATAATAAAATATGTTATAAGTAGTAGTCTTG
AGATGAAATGACAAAACTCTGATGAAGTCCGAATCAATCAATCAATCGAC
TGCTATGGTACTCTCAACATGCCCACATTATACCAATAGTGAGTGTGGGA
AAGAGAGGCTCATACTGTATTAATTGGTCCATGGTGACCTGCCAAGGCAG
CTCTCGTTCGGAACTACCCTGAAGTTTACTGGCCCTGTGCCTGTGGACTC
TCGGCAGTGAACGTCACCGGTACGCAATTGCGTGGCCCAATAAGCTCGGG
GGTGAACCAATGGCGTATGGCGGTTTTGAATAATAAATGGACGCCGCCAC
GGAATTCGGGAGGAATCCCGTAAGTAAGCACCAGATCCAGCCTGAGTATG
GAGATGGGCAGGCTGACGCGGGACGTGACTACTGAACCTGTCTCGCGAGA
CCAAATTCTCAGGTGCTAACAGGGACAGGGAAATATTATTTTTCCCTGTT
CAGCCGACCACGTGCAGGATTGGCAATCTTACCCGGTTGATCCATACTCT
TGCTACATGTGTGACCATACATTGTGTGAAAGAGAGGCGCACATGGTGAC
CTGCCAAGTCAGCACTTGTTCCGGAACTACCTTGAGGTTTGCTGGCCGTA
TGCCGGCGGACTCTCGGCAATGAACGCCATCGGTACGCAATTGCGTGACC
CAATAAGCTCGGGACTGACCCGATGCCGTATGGTGGTTTTAAACAAATAA
ATGGACGCCGCCACGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGAT
TCAGCCTGAGTATGGAGATGGGGCAGGCTGACGCGGGACGTGACTGCCGA
ACCTGTCTCGCGAAAGTTAAAGCACCTCTGTTCCAAGGAAATCAAGACAT
GATGGAAATAAAGAGAACATCGGCAATTCTGAAAGTGTCAGACTATCGGT
AGGCGACACGTTTTGTAGACAAGGTGCTCGACATTCAGCATGGAATGCCA
GCCCGACCTCAAACGGTTCAACAAGCCCTGAAGATCTATATTTACCGACA
TCCCGTTAAGCTGGAGATCTATTTTGCCTCCCCACGACCAGCGTTCTCTT
TAAAAAGCGACAAGGTAGATTGACGCGGATTGATAACTTAAGATTGCGGG
CAAAACATCATCTATGGTCATAGTCCTCATACATATAGCAGGGTATGGAT
CAGCCGGCTAAGGTTGCCAATCCTGCTCTGGTCAGCTAAACAGAGAAAAT
GGATATTTCCCTGTCCCTGTTCGCGCCTGAGAATCTGGTCTCACGAGACG
GGTTTGGCGGTCCCGTCCCGTGCCAGCCTGCCCATTCTCTATACTCGGGC
TGGATCTGGTGTTTAGTCATGAGATTCCTCCCGATTTCCGCGGCGGCGTC
CATTCAATTATACCCCCAACCGCCATCGAGTCAGTCACGAGTTTATCGGG
TCACGCAACTGCGTACCGATGACATTCACTGCCGAGAGTGCGCCGGCACA
GGGCCAGTAGTCCTCAAGGTAGTCCCAGTTACGGGTGCTGCATTTTCTGG
TCGCCATGGACTATGACCAATTAATATGCGCCTCTCTTTTCCCACACCCG
CTATAGTACACTATTATTGGTATGAAGTGGGCAATGTGAAAGTATTGGAA
CCCCTTATGCATATCCGTTTTTCGGCGAACCACATCCATTTTTCATCCCC
TCGCGATCTTGTAAACCGATGAAAAATGACCTTACAGTCCCGAAACACCT
CCGCGCGCCGTCTACGCGCAGAAGTGGCTAAAGACCGGTTCCCGAGAGTG
TGCTCATGGCGGCCTCTTCACGTACAATGGTGCTGTGCTGTGAAAGACGT
GTCGTCGACTGAAGTATTCACGCTCTGGCGTCCTGGTGTATGTCGAGCAA
CCCTCTGTCGAGCCAAGGGTCGAACATGTATCCCACCCCAGCCCTGTAGT
GAACCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig950:99740..102795+

>mRNA_F-serratus_M_contig950.20867.1 ID=mRNA_F-serratus_M_contig950.20867.1|Name=mRNA_F-serratus_M_contig950.20867.1|organism=Fucus serratus male|type=CDS|length=324bp|location=Sequence derived from alignment at F-serratus_M_contig950:99740..102795+ (Fucus serratus male)
ACAAAAGCTTATGTTGAATCAAAAACTTGGAGGCTTGGATGCAGGATCTC
GAATTATTCAGTGCTGAACGGAAGCTCTAGGCTTATTGTGACAAAAGCTT
ATGTTGAATCAAAAACTTGGAGGCTTGGATGCAGGATCTCGAATTATTCA
GTGCTGAACGGAAGCTCTAGGCTTATTGTGAAGTGGCTAAAGACCGGTTC
CCGAGAGTGTGCTCATGGCGGCCTCTTCACGTACAATGGTGCTGTGCTGT
GAAAGTGGCTAAAGACCGGTTCCCGAGAGTGTGCTCATGGCGGCCTCTTC
ACGTACAATGGTGCTGTGCTGTGA
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