mRNA_F-serratus_M_contig95.20861.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig95.20861.1
Unique NamemRNA_F-serratus_M_contig95.20861.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig95.20861.1 vs. uniprot
Match: A0A6H5KFW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW3_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.680e-5
Identity = 14/25 (56.00%), Postives = 22/25 (88.00%), Query Frame = 1 
Query:   10 SHFIQQCPKQICQRCGVKGHHIKEC 84
            +H+  +CP+Q+CQRCG +GHH+K+C
Sbjct:  375 NHYAHECPQQVCQRCGGRGHHVKKC 399
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig95.20861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFW3_9PHAE2.680e-556.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig95contigF-serratus_M_contig95:774898..775960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size176
Cds size150
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig95.20861.1prot_F-serratus_M_contig95.20861.1Fucus serratus malepolypeptideF-serratus_M_contig95 774924..775960 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932708.398974-UTR-F-serratus_M_contig95:774897..7749231622932708.398974-UTR-F-serratus_M_contig95:774897..774923Fucus serratus maleUTRF-serratus_M_contig95 774898..774923 +
1690964433.6263883-UTR-F-serratus_M_contig95:774897..7749231690964433.6263883-UTR-F-serratus_M_contig95:774897..774923Fucus serratus maleUTRF-serratus_M_contig95 774898..774923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932708.4134426-CDS-F-serratus_M_contig95:774923..7749791622932708.4134426-CDS-F-serratus_M_contig95:774923..774979Fucus serratus maleCDSF-serratus_M_contig95 774924..774979 +
1690964433.646515-CDS-F-serratus_M_contig95:774923..7749791690964433.646515-CDS-F-serratus_M_contig95:774923..774979Fucus serratus maleCDSF-serratus_M_contig95 774924..774979 +
1622932708.4277356-CDS-F-serratus_M_contig95:775866..7759601622932708.4277356-CDS-F-serratus_M_contig95:775866..775960Fucus serratus maleCDSF-serratus_M_contig95 775867..775960 +
1690964433.659561-CDS-F-serratus_M_contig95:775866..7759601690964433.659561-CDS-F-serratus_M_contig95:775866..775960Fucus serratus maleCDSF-serratus_M_contig95 775867..775960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig95.20861.1

>prot_F-serratus_M_contig95.20861.1 ID=prot_F-serratus_M_contig95.20861.1|Name=mRNA_F-serratus_M_contig95.20861.1|organism=Fucus serratus male|type=polypeptide|length=50bp
MPQADLPEMWGEGAPYQGMYQHQRWLEGIAVWQEAVNKKKDDPYERSTC*
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mRNA from alignment at F-serratus_M_contig95:774898..775960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig95.20861.1 ID=mRNA_F-serratus_M_contig95.20861.1|Name=mRNA_F-serratus_M_contig95.20861.1|organism=Fucus serratus male|type=mRNA|length=1063bp|location=Sequence derived from alignment at F-serratus_M_contig95:774898..775960+ (Fucus serratus male)
GGGGACAGGAGCCACTTCATCCAGCAATGCCCCAAGCAGATCTGCCAGAG
ATGTGGGGTGAAGGGGCACCATATCAAGGAATGTGAGGTGGAATTTGCCG
GGGCTGCGGCAGAATGGGCCGTTGAAGTAGAGCCCTTCTGAACGAAATGC
TATGAGCGTACACGGTCTCCCGTTTGATTATTCCTTTGGTGTATTTTTCG
TTTTGTTAGTTATAAGTTAAGATAATCCATAAGTCCCCACAACGCTGAGC
TAGGATACAGTAGTAGTCGTGTAGACCTAGGTAGTTTAGCTTGTCCGGGC
TCCTATCATTCGCCTCTAATTGTAGACGTAGGTAGTGGCGGTGCCCCAAA
CCCCTTTCCCCTATTTTTAGACTTGCGATGGTAAGAATGCATGCTGTCTC
CGTTCGCGTTGTTGTTTCGAGGCATCGAACTTCAGGGATCGGATAGACAA
AGAAAGAACGTTGGCTTCTTTGAACGTTGGTTCCTTTTTGTCCGGACTAT
TTTAGGCATGATGTCCGTTGACAAGTATATGAAATGGTTGAACCAAAGAG
TAGGGTAAGAAGAGAACGCTTGGCCCCGCGTCCCCTCTTTTTGAGTAACA
ACAAACCAGTAATCCGTTTTCTTTTGCAGATAACAGTGATGGAAGTTTCT
CCGTCGAGCGGCAAGCCACATGAAAACATACGCCATAGCCGTTGGTTGAT
TTAACCACACAAATGTTCATTCAACATGCCGTGGTCATTGGCTGGCTGAT
CCACATGAAATGTTAGTTCAACGAGCTCCGTTGAAACAATAGTAAATCTG
CAATGTAGTATTTTGGGGCTATGAAAAACGTTGATCACTGCTTGGACCTT
CTACTTAGTACAGGAAGGAGGCGTCCTTAGCCCGTAGAAGTAGGACCGGT
TTCCCCTTTTTTTCTGAAGTTTTAATCCGTTGGGAAGAAATGATAGCCAT
GACCGTTGGTCACTGTCAGGTATCAACATCAACGTTGGCTGGAAGGGATC
GCTGTTTGGCAGGAAGCAGTAAATAAAAAGAAGGATGACCCATACGAACG
CTCTACCTGCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig95:774898..775960+

>mRNA_F-serratus_M_contig95.20861.1 ID=mRNA_F-serratus_M_contig95.20861.1|Name=mRNA_F-serratus_M_contig95.20861.1|organism=Fucus serratus male|type=CDS|length=300bp|location=Sequence derived from alignment at F-serratus_M_contig95:774898..775960+ (Fucus serratus male)
ATGCCCCAAGCAGATCTGCCAGAGATGTGGGGTGAAGGGGCACCATATCA
AGGAATATGCCCCAAGCAGATCTGCCAGAGATGTGGGGTGAAGGGGCACC
ATATCAAGGAATGTATCAACATCAACGTTGGCTGGAAGGGATCGCTGTTT
GGCAGGAAGCAGTAAATAAAAAGAAGGATGACCCATACGAACGCTCTACC
TGCTGAGTATCAACATCAACGTTGGCTGGAAGGGATCGCTGTTTGGCAGG
AAGCAGTAAATAAAAAGAAGGATGACCCATACGAACGCTCTACCTGCTGA
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