mRNA_F-serratus_M_contig95.20847.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig95.20847.1
Unique NamemRNA_F-serratus_M_contig95.20847.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig95.20847.1 vs. uniprot
Match: A0A6H5KN98_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.840e-54
Identity = 99/169 (58.58%), Postives = 123/169 (72.78%), Query Frame = 3 
Query:   42 PTKRRATTGSAIDKKRDAREANRIHCRQTRERNREKERLLKEEVEVLTLYKAIVEDGPDLFSCHRVELDAPFSFLCENYYTRLQVAPEEVLGQPLASIVDPRDIYQLRGAVCQIL-NQASGGXXXXXXGGTGTSGAMVHLRVVCGGLTFPASMTMVIGSQGMIVVTRLY 545
            PT R   T  A D ++  R ANRIHCR+TRER R  E LLKEEVE+L+LYKA+VE+GPDLFSCHRVE DAPFSF CENY+ +LQ+APE+ +G+PLASIVDP D   L  A+ ++L N+ + G           SG +V LRV CG ++  ASM+MVIGSQG++VVTRLY
Sbjct:    3 PTPRSTPTRGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTNIGDSEPG------SGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLY 165
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BLAST of mRNA_F-serratus_M_contig95.20847.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 8.890e-40
Identity = 82/152 (53.95%), Postives = 109/152 (71.71%), Query Frame = 3 
Query:   93 AREANRIHCRQTRERNREKERLLKEEVEVLTLYKAIVEDGPDLFSCHRVELDAPFSFLCENYYTRLQVAPEEVLGQPLASIVDPRDIYQLRGAVCQILNQASGGXXXXXXGGTGTSGAMVHLRVVCGGLTFPASMTMVIGSQGMIVVTRLYD 548
            +REANRIHC++TR+R RE+ER L E VE+L L ++IVE GPDLFS H   +DAPFS+LC+N+  RLQ+ PE ++G+ L SIVD R+   LR A+ Q+LN+A   XXXXXX       A+VH+R+  G +   ASM++  GS G+IVVTRLY 
Sbjct:   25 SREANRIHCKETRDRRRERERALSEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQHXXXXXXXXXXXXX-AVVHVRIAHGQIFCEASMSIACGSHGLIVVTRLYS 175
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig95.20847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KN98_9PHAE1.840e-5458.58PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRF4_9PHAE8.890e-4053.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig95contigF-serratus_M_contig95:529114..535257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBasic leucine zipper and PAS domain protein
Ec32 orthologEc-14_006560.1
Exons3
Model size554
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig95.20847.1prot_F-serratus_M_contig95.20847.1Fucus serratus malepolypeptideF-serratus_M_contig95 529114..535240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932713.7388136-CDS-F-serratus_M_contig95:529113..5294081622932713.7388136-CDS-F-serratus_M_contig95:529113..529408Fucus serratus maleCDSF-serratus_M_contig95 529114..529408 -
1690964436.561612-CDS-F-serratus_M_contig95:529113..5294081690964436.561612-CDS-F-serratus_M_contig95:529113..529408Fucus serratus maleCDSF-serratus_M_contig95 529114..529408 -
1622932713.764919-CDS-F-serratus_M_contig95:534481..5345731622932713.764919-CDS-F-serratus_M_contig95:534481..534573Fucus serratus maleCDSF-serratus_M_contig95 534482..534573 -
1690964436.57355-CDS-F-serratus_M_contig95:534481..5345731690964436.57355-CDS-F-serratus_M_contig95:534481..534573Fucus serratus maleCDSF-serratus_M_contig95 534482..534573 -
1622932713.78282-CDS-F-serratus_M_contig95:535090..5352401622932713.78282-CDS-F-serratus_M_contig95:535090..535240Fucus serratus maleCDSF-serratus_M_contig95 535091..535240 -
1690964436.584603-CDS-F-serratus_M_contig95:535090..5352401690964436.584603-CDS-F-serratus_M_contig95:535090..535240Fucus serratus maleCDSF-serratus_M_contig95 535091..535240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932713.8058348-UTR-F-serratus_M_contig95:535240..5352571622932713.8058348-UTR-F-serratus_M_contig95:535240..535257Fucus serratus maleUTRF-serratus_M_contig95 535241..535257 -
1690964436.607245-UTR-F-serratus_M_contig95:535240..5352571690964436.607245-UTR-F-serratus_M_contig95:535240..535257Fucus serratus maleUTRF-serratus_M_contig95 535241..535257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig95.20847.1

>prot_F-serratus_M_contig95.20847.1 ID=prot_F-serratus_M_contig95.20847.1|Name=mRNA_F-serratus_M_contig95.20847.1|organism=Fucus serratus male|type=polypeptide|length=179bp
MDERAGRFPTKRRATTGSAIDKKRDAREANRIHCRQTRERNREKERLLKE
EVEVLTLYKAIVEDGPDLFSCHRVELDAPFSFLCENYYTRLQVAPEEVLG
QPLASIVDPRDIYQLRGAVCQILNQASGGGGGSSAGGTGTSGAMVHLRVV
CGGLTFPASMTMVIGSQGMIVVTRLYDV*
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mRNA from alignment at F-serratus_M_contig95:529114..535257-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig95.20847.1 ID=mRNA_F-serratus_M_contig95.20847.1|Name=mRNA_F-serratus_M_contig95.20847.1|organism=Fucus serratus male|type=mRNA|length=6144bp|location=Sequence derived from alignment at F-serratus_M_contig95:529114..535257- (Fucus serratus male)
TGAGCTTGAAAACGGAAATGGACGAAAGGGCCGGGAGATTCCCTACCAAG
CGCCGGGCTACCACCGGATCGGCAATCGATAAGAAGAGAGATGCCAGGGA
GGCCAATCGCATCCACTGCCGCCAGACTCGCGAGCGCAATCGAGAGAAGG
AGAGGCTTCTCAAAGAGGTAGGTGAAGATGAAATAAACTGAAAATAGTCA
AGGGGAGTTGTGTGCTGCATCTCATTTTCCGGCTCTTCTTTTAGGTGCGA
CCTGGCCCGCTAAACTGCACCTGACGACCATAGCTTTAAATACAAAGCCT
CTAAATAGTATGCAGCAGTTCGGGGATATTCGCTCTCATGAACGTCCGTC
ATCACATTATCTGTGATTATGAGCCTGATTTGAAGCCTCGCTAGCGAATC
CACGAGTCCGTGGATCGAGCGCTTAGATTCACTGCTCTGTGGAGCAGCCT
TCCAGAGCGCTTTGCCCGCGCCTACGCGATTGACCTCTAGTGTTGACACG
CCCGGCTTTCGAGGGATGTCGGCCAGAATCTTGGTTCGTCGCATGCCCGT
TATTATTATTATGATTCACTAAATATTACTGTACTTGGTGAACCGTTTGA
CGCATATGTACCTGTAATGGCCATGCGTGGTCTTTGTTACTGTTTGTACA
CTGCGAATAACTTTACGCCTTAACGTGATATCAGGAAGTTGAGGTGCTGA
CCCTGTACAAGGCTATCGTAGAGGACGGACCCGATCTATTCTCGTGTCAC
CGTGTGGAACTTGACGCCCCCTTCAGGTGGGTCGATCGCAGGCGGCACTG
TGTGTCCGCACCGTCTGAGTTGTTGTATGCTATGCTAACACACGAACAAC
GGGTCTTCTTCGATTGTTCATTTGGAGCGTACCTTGTAAATAGTACTGTA
ATTAAACACCGAAGGGCCCGTCTCGCGCAAGCAGCACGCAACCTATCCGG
TACAGTAGTACAGTAGCTCTACTTGTATTAATTACTGTTAACTACTACTG
ATGCAGTATGCTATAATATGATACTGATCTGATGACACATATATGTACAA
CGTACTGGTACAGAATTGCCTCATTACCTCACTCGTTACTTTTCCAGCAT
ATTACATGAAAAGGTATGCATACGGTATACCGGTATTTCATCTTCATCTT
GCATTTTTGGGTGACGGTTTGACGGTTGGCGGATCAAGGATGACCGGACT
TTGGTGTGTTCTCTGTTCAAGCGAAAGAGTACTGTATCGGGTATTACTTA
CGTGGGCAAGACGCGCCTATTAATAACCATCAATAGAGACTACCATTGGT
AAATGTAGTTGGAAGGGAAAATAGTTTTGGAGGATCAGTACGTATCGCAC
CTATAGCGGCAGCATATTTCTGCGCGTAAGCCCGGTGCAACACACTATTA
CACTATTACTGGGTATGGGTGAGGCCCGATCGGTTCATTTGAAGAATACA
ACAACTACTACTACTATATAATAGTACTGTACAGTTCATTTTTTTTGTTT
AGTTTTAATCACACACCTATAGCCGATCGACTATTAATTATTATAGTTAC
CTTTCTTTTTACGGTGCTTCCGCGCTTTCAATCTCTTAACTTTGTATTTT
GTCTTGATTCCTAATGTAATGTAATGTAATTCTGTAATTGAAAGAAAAAT
CTGAACGCATATAGACCTTCCGAGCATCATCCCACACCACAGGGGAAAAA
CTGTGAAAACGCTTAGATGCGATAGTACTATAGTTGTCGGGTGATTTTTA
TTATTTTTCGATAGATGAAACAGAGTAGAGTGCTACAAACAGCTTTACTG
GTACTCTATGTACGTACAGTATTTAGAACTTGGTCAGATCGTGAACAGAA
AACAGTCTAGAGTACGTTGTACTACTGATAATAATTATCTATCCTCAAAA
CAGGATTGATAAGACTCTTTAGTTGGCACTCAATTTAGGTTTCATTACTG
TATTAGTGTCATATTACACGACACGTTTCCAAAGCGAGCAAGCGGTGGTG
AGCTTGGCTCGTCATGACAGCGCGTTCGGTACGCAGGTGTCTCATATTCT
CGCCGCAAGGTCGCGAGGTCCTCCTTCTCACAGCTTCTCGTCGGCCACGC
CACGCCCTACAAATTCAACTTTAAGTTTAAGACGATGCTCGAACGTGTGC
GACGTAAGTAATTAAAAGTCAGATAGATGGATGGATATCATACCTGCAAC
ACGACAAGGGATGGATGGATATTGTATTAGTAGTATATAGCTGTTAATGT
GTAGTAGCAAATAATTTCGCTCTGTCGATGTCAACTGAAGACCGAACGTC
TGAAGGGCCGAAGGTCTTGCGAAGGTCTTGCGCGACACGCTGGTGCTACT
GTTCTTCACTTTCCTTCAATACTACCAGGTACGTATTTTTAGTGTCGTGT
GGTGTGCCAGCCAACAAGACTTCGAAACAGTACCCTCGCAAAACACAGTT
TCTTGCCTTGGCGGCTACTATTACTAGGTTTTTTTCCCTTCGAGCGGCTA
AAGCAGCTATTAATAGCAGCAGCTGTTCAGCGCGCACTACGGCCGTCTTA
AGCGAAGAGCCAACATCTCTAATCGGAGCAAGAACGACGTCGGTCGCGAG
CGAGAACGAACGGCTTAAACCTTCCGCCCAGCCAAATATATACCGGTACT
CTACATGGTTGTACGAACAGCTTGTTGTACATCAACAATAGAGTTATCAG
ATGTGGAGAGATATCTTCAATGCTCCAATCTTCGTCGGACGACTTTTGCT
CCTAAAATTTTAACATTTGCAAAGGCAACGCGCGGTGGAGGTGGTAACGT
CGGCAAGAGTTAGAGGTCTTTATGTCATGTTATATGTCATATCAGCCTTG
GGTACTACGGGCAGGGTCTGACCCTCGACGAGAGGATTATCGAGCATCAG
TGGAAGAATTGGCCCCCTCGACGCCGACCGAACGGGTCATACTAATTAAA
AAAATTAGAGAGGGATCTCACCCTAAACAAACGATTGATTCGAGCAATAT
TATCACGTCACTGTAATGTATTGGCAATTATAAGGTTGTTTAAAGAAAAA
TGCGAACGCGCCTAGACCTTCTGATCCGCCCTTGTTGGCTGTTGTTGTTG
TTGTTGTTGTTTCTCACATTCAGCGTATTGGTTGCCAACCCGAAAAAACT
ACTTTACACGGTGGCCAATCCCGCTCGTGGTCTGCTGAACAGGGAAAAGA
GAACAAAAGAAAAAGTCTGGCAGCATACCCCCCCCCCCCCCCACACTGCT
CGTTTGGCCGTGTGTTTTGTGTTGAGACTTTCCAAAAAAACGGCGATTTC
TGCCACAAGTATTAATATTTAATAGTAATGTGTTTCAAGAAAAGGCTGAA
CGCATCTAAACGTTACATTGTTACTTATAGCATCCTAGCATCCACCCAAT
CAGGGAAGAGAACAAAAGGGATTGTCAAAACGTTTAGGTGGGAGCATGGG
CTGCGACGACAAAAAATAAACGAAATGGCTATTTGCCCCACCGGGGGGTT
CCATATTTACGCCACCACCTGGATCCTCGCGTCAGAAGACTCGGTTCGTT
ACAGTACATGCATGGGTGTGTAGGCGCGTCGCAGGGCTATCATGGGGTCC
ACCGTGCTGCCCAAACGGCCCTGTCTACGTTATTTTACGGCCGGTGGGGT
ACAGCGGAATCCCCACACCGGTAGGGCAAATAGCCAAACGTACCAGAAAA
CACCAACCACCCCACCGGCCGTGGCAGCACGTATACAGGACCGTTTGAGC
TGCACGATAGACCCCATGATAGCCCTGCGACCCGTCAAAACACCCATGCA
TGGACTCTGACCAACCGAGTCTTCTGACGCGAGATCCAGGTGGTGGGGTA
AATAAGTCATTACCCCCCCCCCCCCCGGTGGGGCAAATAGCCATACCGAA
AAATAAACTTTTTATGGGATTTATTTGGGTTACATTTTGTTACACATCTA
GCAAGAGTACGGATCGACCGGGTAAGGTTGCCAGTCCTGCTCGTGGTCAG
CTGAAAAGGAAAAATGAATATTTCCCTCTCCGCGTCAGCCTGCTCATCTC
CGTGCTCAGGCTGAATCTGGTGCTTATCTACGGGATTCCTCCCGAGTTCC
GCGGCGGCGTCAATTCATTCATTTATAACCGCCATACGCCATCGGGTCAG
TCCCGAGTTTATCGGGTCACGCAATTGCGTACCGATGGCGTTCACTGCCG
AGAGTACGCCGGCACAGGGCCAGTAAACATCAAGATAGTTCCGAACGAGT
GCTGCCTTGGCAGGTCACCATGGACAAATTAATATGCGCCTCTCTTTCCC
ACACACATAATTGGTATGAAGTGGGCACGTTAAAAGTACAGTACCGATAT
TCCCCAATGGTGGCGTCTTATTGATCATAGGACAGGGTCGATAGTATATT
ATCGAGAAGAAACCCACCGTTATACTGTACAAGTTTTGTTTATGTCCGTG
CTGTGATATGTTCTGGTACTGGTTATATGCATACCTATACTATACCTGGT
ATACGCCTGCACTTTCAACATGCCCACTTCATACCAATAGTGGGTGTGGG
AAAGAGAGGCGTATATTAATTAGTCCATGGTGACCTGCCAAGGCAGCACT
TGTTCGGAACTACCTTGAGGCTTTGGTGGCGAACTCTCGGCAGTGAACTC
CATCGGTACGCATTTGCGTGACCCGATAAACTCGGGACTGGCCCGATGGA
GTATGGCGGCTTAAAATAAGTAAATGGACGCCGCCGCGGAACTCGGTAGA
AATCCCGTTCGTAAGCACCAGATTCATCCTGAGTGGGAAGATGAGCAGGC
TGACGCGGGACGGGACTGCCGAACCCGTCTCGCGAGGCCAAATTCTCAGG
CGCGAATGTGGACAGGGAAATATTAATTATCCCTTTTCAGCTGAGCACAA
GCAGAATTGGCAACCTCACTCGGTTGATCCTTACTCTTGCTATATGTGAC
GACACTGTTCCTTGCAGGAAAAGCCGTTGGACACAACCAACGCTGAAGCT
TTTCTCCATTGATTTCATTTCCAAGGGCTTAGTCAGTTTCTTGTACGGAA
CGTTAGGGCTTTAGTGCCGAGGCTGTTCGAGATGAACATCATGCTGCACA
ACTGCTGCATCCCGACTTAAATGAATCCCTCTTACTCTGTACCTATCTGT
AGTCCCTCCTAAAATTTACTCATATTTCCGAAATCAAAATCAACCAACCA
TCCCAAGATAAGAAGGCGCAAGCATCCAGTCAATCAGTTTGTCCTGTGTT
GGTGTTTGTACCCCGAGCTTCGAATTTTTTTACACCTCATTCCGCCAACC
TCCGAAAAGTGTATTGAAAAGTGTAAGCCATTCGTCGCCCGAGTGGTCCA
GTAGGTAACCTGCATACCTGCTAGTGCGGAAGTCGTGAGTTCGATTCTTA
GCTTAAGCAGAATTTGTGTTCTTTCTTTCGTAACGGAAAGCGTGGGAGCG
TGAGTAAGTAAAATTCAACCATTGGTTGACGAGTTGTACGAGTGCTGAAC
TTGCATCGCGTTAAAAATTGCAAGGCGTGAACCGGGGAGAGATGGGAAGA
TCCTTTGTGACCACAGGGAGGATGGTAATTAGAGGTCCATCGGCTAAAAG
TGTGATTAAAATAAAATAAAATAAAATAAAAGACTGCAGCAAATCGTTCC
ATGGATATACTTTTCGATCTGGCCTGGCGTCTTGCCCGATGCCCCAATTC
TCTCGTAACTGTCTATCGGTACGATTAACCTTATTCAGTATTATTAGTAT
GTAGTAGCTGCAACTAACGTAACTAACGATGTAGTGTGGCCGTGTTTCCC
CGTCGATTTTCCCGCTCCTTTTCCTCCCAATTTTCCACCCAACACTCAGT
TTCCTCTGCGAGAACTACTACACCCGACTCCAGGTGGCTCCAGAGGAAGT
TCTGGGCCAGCCGCTCGCGAGCATTGTCGACCCCAGGGATATCTACCAGC
TGAGAGGCGCAGTGTGTCAAATCCTCAACCAGGCCAGCGGAGGTGGGGGT
GGCAGCAGCGCAGGGGGCACTGGGACTAGCGGGGCGATGGTACACCTGCG
TGTTGTATGCGGTGGGTTGACATTCCCAGCTAGTATGACCATGGTTATCG
GCAGTCAGGGGATGATAGTCGTGACGCGACTTTACGACGTGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig95:529114..535257-

>mRNA_F-serratus_M_contig95.20847.1 ID=mRNA_F-serratus_M_contig95.20847.1|Name=mRNA_F-serratus_M_contig95.20847.1|organism=Fucus serratus male|type=CDS|length=1074bp|location=Sequence derived from alignment at F-serratus_M_contig95:529114..535257- (Fucus serratus male)
ATGGACGAAAGGGCCGGGAGATTCCCTACCAAGCGCCGGGCTACCACCGG
ATCGGCAATCGATAAGAAGAGAGATGCCAGGGAGGCCAATCGCATCCACT
GCCGCCAGACTCGCGAGCGCAATCGAGAGAAGGAGAGGCTTCTCAAAGAG
ATGGACGAAAGGGCCGGGAGATTCCCTACCAAGCGCCGGGCTACCACCGG
ATCGGCAATCGATAAGAAGAGAGATGCCAGGGAGGCCAATCGCATCCACT
GCCGCCAGACTCGCGAGCGCAATCGAGAGAAGGAGAGGCTTCTCAAAGAG
GAAGTTGAGGTGCTGACCCTGTACAAGGCTATCGTAGAGGACGGACCCGA
TCTATTCTCGTGTCACCGTGTGGAACTTGACGCCCCCTTCAGGAAGTTGA
GGTGCTGACCCTGTACAAGGCTATCGTAGAGGACGGACCCGATCTATTCT
CGTGTCACCGTGTGGAACTTGACGCCCCCTTCAGTTTCCTCTGCGAGAAC
TACTACACCCGACTCCAGGTGGCTCCAGAGGAAGTTCTGGGCCAGCCGCT
CGCGAGCATTGTCGACCCCAGGGATATCTACCAGCTGAGAGGCGCAGTGT
GTCAAATCCTCAACCAGGCCAGCGGAGGTGGGGGTGGCAGCAGCGCAGGG
GGCACTGGGACTAGCGGGGCGATGGTACACCTGCGTGTTGTATGCGGTGG
GTTGACATTCCCAGCTAGTATGACCATGGTTATCGGCAGTCAGGGGATGA
TAGTCGTGACGCGACTTTACGACGTGTAGTTTCCTCTGCGAGAACTACTA
CACCCGACTCCAGGTGGCTCCAGAGGAAGTTCTGGGCCAGCCGCTCGCGA
GCATTGTCGACCCCAGGGATATCTACCAGCTGAGAGGCGCAGTGTGTCAA
ATCCTCAACCAGGCCAGCGGAGGTGGGGGTGGCAGCAGCGCAGGGGGCAC
TGGGACTAGCGGGGCGATGGTACACCTGCGTGTTGTATGCGGTGGGTTGA
CATTCCCAGCTAGTATGACCATGGTTATCGGCAGTCAGGGGATGATAGTC
GTGACGCGACTTTACGACGTGTAG
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