mRNA_F-serratus_M_contig949.20824.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig949.20824.1 vs. uniprot
Match: D8LRI3_ECTSI (200 kDa antigen p200 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI3_ECTSI) HSP 1 Score: 514 bits (1325), Expect = 5.850e-152 Identity = 560/1549 (36.15%), Postives = 723/1549 (46.68%), Query Frame = 1
Query: 1 KEPEDDSYLFMGATAGAKGTKSGGEAAEAAALLLDSGDSFGLSKPKT-QGRERVSKPDSSGLQGAASETNVGRES------------GVFGARRQEDERQSV--------SVPGKRDLGTV---RRGDNDSPSASSRKHTGASLGNTTT------SLSEGIRRDQDVDFDRPNEMDALLQLTD--------SAALAGTTTKTKPRL--------GLVDSRS---KALDTASESLGFEESERIRRPLTPSPHSSPRKGRSETPDHDPQRFRARRSLVQQDALEIPAQGFTEGPQKTLRAGSGSGPE------RAL------AID------MLDGTTKSSL----------------------------VEGGASLHHKEDGG---GSGERPGISIADALEGEKAEAELLVDDARNPAFVGVIDEEISTLLAAGTLDSGDGNNGVAAEVNSGGCRAPRRSALMGRGK--SRPRAASALGVTFDDDVRGIDALDILPGSS-DEDDK----TPVADALAAASSEPVALPRSQLRDDVIPM---IPSADKGINDAARKRGGDDGLSFPSPFSV---STSLRSGRKGEVQSSSITEGLSPAAARLLVEDSSSEEGIQPLASGTTPT---------------------------------------------VGSKELTDDAKLDLALGFIPSAMSGDRKPRRSLPQGGRRRAQVG----------------------------VSPLAVQDQA-----------GLADGGVKAMAPVAAGGGD-----TVKMTGVLPHSPRSMGKGSVQNKNNDA-----------EDVGVHGLEHFDGESPASKAQGPETSDVFASAAT--AQGTWCKGDRGDSGGTASLTKKQGDGGVIRGEGASASAGA--SGYALGVKAPVLASLERQLVLLTAENERAAAKVAKDEERLQREVDMAREALKAAEARAFEVEAALAAARARIRQLEFEATEHAVRVAALEGRAASDLRAEHEACLAKISDVERRHQEDRQKAEKRQEEALSELKRLHRDEIEDVRRRSADSRTLDTLAGQVQASAGAVKLLQAEILDRKKASEVSREGHMEARERLVKELEHSARRAQQTAEDEVQRLQGTLMAMDQVMRSLRGQNSGERERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIKLETERENLSVVQVAAAEAAEETAQKQAMEGERLRVARQSLXREASSLEARLVAARAELLKADDVRASLTRLREQDELKRGRLGVVAVELEQSLKEVQTRIDDCEESHRQAETAKAAALEESDMFNQERESLRRRSAQVEEAARRQDAERTSIAQARAQSATELSASRRLKAELARAFAVEQRHPK------ALDDVNFTLNTPRVYRIDGGVGLENSMNLSGFGCTRNKEGLLKVPPEVAFPSGVGDCSSSRNPLAWSANGGGTGYHAFPHSPDAAIPHTGIAAAEATLQAISTGPILLGRDLGRELERLARRAAELRACTREQNAFLASNRVAGLSVAASTVAE 3984
+EPEDDSYLF+GATAGAKG KS E+A+ AL DS DSFGL K KT +GR + + P G G+ S T +G S G +Q+D S S G L T GD +A+ G G + +++ G D D DFD P+EMDALL++TD S A A T P L G D + LDT++ +PSP SSPRKGRS+ R+R+ L + + G +G + G G E RAL +D + DGT ++ + GGA +E G GS S+A A ++ D A + VG + L ++G G+ V G + PRRSAL G K ++ R + GVTFDDD+ G+DALDILPGSS DE +K TP + L E LP+S L +++P +P + A G G+ P + ST++ S S+SITEGLSPA A LL+ DSSSE +A+G T +G E DDAKLDLALGF PSAM G RKPRR+LP G RRR++ G SPLA A G AD +A GD + GV P P ++ + + + A + G P++ G E+ + A ++GT D G G+++ ++ G A++S+ + S + GV VLASLERQLVLL +E E A KVA+DE+RLQR+ D+AR+A AA+ARAFE EAAL R+A DLRAE E+CL KISD E R QED K RRR++DS+TL+TLA QVQASAGAVKLL++E+++RK SEVSREGHM+ARERL+KELE SARRAQQTAEDEVQRLQGTLMAMDQVM +LRGQN+GERER R+KLET+RE+ + +Q++A++AAEE A++ A E RL +ARQSL +EASS EARL ARA+L KAD VR +L RLR+QDE++R RL VA ELE++ +EV+ + D+ E R+AE K AL S +ERE+ + R + EEAARR +AER+SIAQARAQSATELS SRRLKAEL+RAFA++QR A D N + G G GL P E + NP + GG G +P TGIAAAEATLQAIS+ P G D+GREL RLARRAA++R CTREQ+ FL S+R A S A TV++
Sbjct: 167 EEPEDDSYLFLGATAGAKGKKSSRESAQEEALNYDSTDSFGLPKKKTSKGRSKYTAPKP-GNTGSESRTTIGSSSPHTGGPSTTPNAAGRGGSQQDDGNLSFLGGRQVQPSSSGGLALDTAVGALGGDMPLSTAAVTAPAGGGRGASRVPPDEEPAVTTGTGIDLDEDFDSPDEMDALLEMTDPSTLMPEPSGASASATGPMPPLLPHGGSTSPGRQDGKKPPHNQLDTSAXXXXXXXXXXXXXXXSPSPPSSPRKGRSDVMTDS----RSRQPLPSRPGRGLTYSGSRDGLSYGKASEEGMGGESRKVEGRALQDSHSGGVDPRVTNAVADGTRNNAALATTRSPTRALLSXXXXXXXXXXXXXXGINGGAGNEGEETGSRVHGSAPEASASVAGART-------MVGDSAGSLGSVGGASDARRQLTSSGP--------GI---VKKNGDQVPRRSALAGADKPTAQSRKPKSRGVTFDDDLVGVDALDILPGSSSDEGEKLGGGTPPTEDLL----EKKGLPQSSL--NLVPTKSPVP-VETAAETVAEGNGNGGGIREPEHRTSEPWSTAVASSGISRRPSTSITEGLSPATA-LLMADSSSEXXXXAIAAGAATTKSRPGSEHPDRSSFAVPRLDLGKAEVDKKVEWSAGLLGVGPTDGGIGEDETIDDAKLDLALGFTPSAMEGSRKPRRTLPAGRRRRSRRGESSTVADGEMEHAGVSIANTSLASMPSTASPLATAMLAETTFERTTLSVGRADDAGSGVAGTGERAGDNGSSRSTLAPGVSPTLPAAVREPTKSSTGATAFGITPVTAAATKGTGTESTPSSAERVPSAALPGSESDRALDTRALIDSRGTLGPLDHGSKNGSSNRD-------LLSGVAAASSSRSENSAESRGVDVSVLASLERQLVLLASEKEAVATKVARDEQRLQRDADLARDATAAAQARAFESEAALXXXXXXXXXXXXXXXXXXXXXXXXXSRSARDLRAEQESCLKKISDAEARRQEDLCKXXXXXXXXXXXXXXXXXXXXXXTRRRNSDSKTLETLAEQVQASAGAVKLLRSEMIERKNVSEVSREGHMDARERLIKELEQSARRAQQTAEDEVQRLQGTLMAMDQVMSALRGQNAGERERLRQEHLRMEALQGAMVAEVESVRKSVEEERQRLA---------------------------RVKLETDRESFAALQISASKAAEEMARQHADEEGRLNLARQSLEKEASSFEARLSCARADLHKADHVRETLDRLRDQDEVERRRLKAVARELERAFEEVRAKTDESIERQREAEAMKMGALAASKTAAEEREAAQLRYIRTEEAARRLEAERSSIAQARAQSATELSTSRRLKAELSRAFAIQQRQQAKGKSAAAADIALSHRNMSPGEQAGSGRGXXXXXXXXXXSVVAKMPGL---PTEATL-------GLAGNPTST----GGIG-----------LPFTGIAAAEATLQAISSAPPFPGLDMGRELGRLARRAADIRECTREQSVFLMSSRAARFSPAPLTVSD 1625
BLAST of mRNA_F-serratus_M_contig949.20824.1 vs. uniprot
Match: A0A6H5KKS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS5_9PHAE) HSP 1 Score: 411 bits (1056), Expect = 1.390e-115 Identity = 531/1571 (33.80%), Postives = 693/1571 (44.11%), Query Frame = 1
Query: 1 KEPEDDSYLFMGATAGAKGTKSGGEAAEAAALLLDSGDSFGLSKPKTQGRERVSKPDSSGLQGAASETNVGRES------------GVFGARRQEDERQSVSVPGKRDL--------------GTVRRGDNDSPSASSRKHTGASLG------NTTTSLSEGIRRDQDVDFDRPNEMDALLQLTD--------SAALAGTTTKTKPRL--------GLVDSRS---KALDTASESLGFEESERIRRPLTPSPHSSPRKGRSE----TPDHDPQRFRARRSLVQQDALEIPAQGFTEGPQKTLRAGSGSGPERALAID--------------MLDGTTKSSLVEGGAS------LHHKEDGGGS-GERPGISIADALEGEKAEAELLVDDARNPAFVGVIDEEISTLLAAGTLDSGDGNNGVAAEVNSGGCR--------APRRSALMGRGK--SRPRAASALGVTFDDDVRGIDALDILPG-SSDEDDK----TPVADALAAASSEPVALPRSQLRDDVIPM-----IPSADKGINDAARKRGGDDGLSFPSPFSVSTSLRSGRKGEVQSSSITEGLSPAAARLLVEDSSSEEGIQPLASGTT------------------------------------------PT---VGSKELTDDAKLDLALGFIPSAMSGDRKPRRSLPQGGRRRAQVGVSPLAVQ---DQAGL--ADGGVKAMAPVAAGGGDTVKMTGVLPHSPRSMGKGSVQNKNNDAEDVGVHGLEHFDGESPASKA--------------QGPETSDVFASA--------ATAQGTWCK---------------GDRGDSG-GTASLT------------KKQGDGGVIRGEGASASAGA----SGYALGVKAPVLASLERQLVLLTAENERAAAKVAKDEERLQREVDMAREALKAAEARAFEVEAALAAARARIRQLEFEATEHAVRVAALEGRAASDLRAEHEACLAKISDVERRHQ-----------EDRQKAEKRQEEALSELKRLHRDEIEDVRRRSADSRTLDTLAGQV-----------------QASAGAVKLLQAEILDRKKASEVSREGHMEARERLVKELEHSARRAQQTAEDEVQRLQGTLMAMDQ-----VMRSLRGQNSGERERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIKLETERENLSVVQVAAAEAAEETAQKQAMEGERLRVARQSLXREASSLEARLVAARAELLKADDVRASLTRLREQDEL--------KRGRLGVVAVELEQSLKEVQTRIDDCEESHRQAETAKAAALEESDMFNQERESLRRRSAQVEEAARRQDAERTSIAQA--RAQSATELSASRRLKAELARAFAVEQRHPKALDDVNFTLNTPRVYRIDGGVGLENSMNLSGFGCTRNKEGLLKVPPEVAFPSGVGDCSSSRNPLAWSANGGGTGYHAFPHSPDAAIPHTGIAAAEATLQAISTGPILLGRDLGRELERLARRAAELRACTREQNAFLASNRVAGLSVAASTVAE 3984
+EPEDDSYLF+GATAGAKG KS E+A+ L DS DSFGL K KT + G G+ S T +G S G +Q+D S+S G R + G++ G+ +A+ G G + +++ D D DFD P+ MDALL++TD S A A T P L G D ++ L + S + ++PSP SSPRKGRS+ + P R L L G + G R GS SG A+ + +GT ++ + S + DG S E GIS EGE E L + A V G+L S G + ++ S G PRRSAL G GK S+ R + GVTFDDD+ G+D LDILPG SSDE ++ TP + L LP+S L +++P + +A + I + GG + ST+ S S+SITEGLSPA A LL+ DSSSE+ +A+G PT G E DDAKLDLALGF PSAM G RKPRR+LP G RRR++ G S A + AG+ A+ + +M +A + S+G+ D GV G+ G++ +S++ + P S A+A A +GT + G D T +LT K G R G +A++ + S + GV VLASLERQL LL +E E AAKVA+DE+R QR+ D+AR+A AA+ RAFE EAAL R+ASDLRAE E+CL KISD E RHQ ED +KAE+RQEEALSELKRLHR+E+ED RRR++ S+TL+TLA QV QASAGAVKLLQ+E+++RK SEVSREGHM+ARERL+KELE SARRAQQTAEDEVQRLQGTLMAMDQ + S+R ER+R R K E + + A +AAEE A++ A E RL +ARQSL +EASS EARL ARA+L KAD VR +L RLR+QDE+ +R RL VA ELE++ +EV+ + D+ E R+AE K AL S +ERE+ + RS + E IAQA QS ++S EQ V ++ G + E ++ L+G NP + GG G +P TGIAAAEATLQAI + P G D+GREL RLARRAA++R CTREQ++FL S+R A S A TV++
Sbjct: 167 EEPEDDSYLFLGATAGAKGKKSSRESAQEQTLNYDSTDSFGLPKKKTSKERALYTAPKPGNTGSESRTTIGSSSPHTDSPSITTNAGEKRGSQQDD--GSLSFLGGRQVQRSSSSGLALDPAVGSLG-GNMPLSTAAVTSPAGGGRGASRVPPDEAPAVTTATEIDLDEDFDSPDGMDALLEMTDPSSLMPEPSGAAASATGPMPPLLPHGGSTSPGRQDGKNPPHNQLHPPGATPPPASSVSTSKRMSPSPPSSPRKGRSDVLKDSRSGQPLPSRPGWGLT----LSGSRDGLSYGGASEERMGSESGKVEGRALQDSNSGGGEPRVTNAVAEGTQNNAALATTTSPTRALLSRARTDGEESRAEEDGISGGAGNEGE--EKGSLEHGSAPEASASVASASAIVGDFTGSLGSVGGASDARRQLTSSGPGIVKKSSDLVPRRSALAGTGKPTSQSRKPKSRGVTFDDDLVGVDTLDILPGGSSDEGEELGGGTPPTEDLLKKQG----LPQSSL--NLVPTKSPVPVETAAETIAEGHGNSGGVRDSEHRTSEPWSTAAASSGISRRPSTSITEGLSPATA-LLMADSSSEDNNSTIAAGVATAKSRPGLEHPDRSSFAVPRLDLGRAEVEKKEEGSEGLFGVGPTDGGTGKDESIDDAKLDLALGFTPSAMEGSRKPRRTLPAGRRRRSRRGESSTAADGENEHAGVSVANSSLASMPSIAIPMATARPAETTFERTTLSVGRA-------DDAGSGVAGIGERAGDNGSSRSTLAPGVSPTLPVDVREPTKSSTGATAFGKTPVTAAATKGTGMESTPSSAERVPSAALPGSESDRALDTRALTDSRGALGPFDHGSKNGSSNKDRLSGVAAASSSRSENSAESRGVDVSVLASLERQLALLASEKEAVAAKVARDEQRFQRDADLARDATAAAQTRAFESEAALXXXXXXXXXXXXXXXXXXXXXXXXXSRSASDLRAEQESCLKKISDAEARHQASAGSAGAAAAEDLRKAERRQEEALSELKRLHREELEDTRRRNSASKTLETLAEQVSFTPLLSCNVSGVCDKVQASAGAVKLLQSEMIERKNVSEVSREGHMDARERLIKELEQSARRAQQTAEDEVQRLQGTLMAMDQGAMVAEVDSVRKSVEEERQRLAERGAALE----------------------------------------------------RDKREADATARAESDRLAEQAAEEMARRHADEEGRLNLARQSLEKEASSFEARLSCARADLHKADHVRKTLDRLRDQDEVGGWVGRWVERRRLKAVAGELERAFEEVRAKTDESIERQREAEAMKMEALAASKTAAEEREAAQLRSVRTEXXXXXXXXXXXXIAQASHNLQSCADMSLG-------------EQAGSGRXXXXXXXXXXSVVVKVPG-LPTEATLGLAG------------------------------NPTST----GGIG-----------LPFTGIAAAEATLQAICSAPPFPGLDMGRELGRLARRAADIRECTREQSSFLLSSRAARFSPAPLTVSD 1603
BLAST of mRNA_F-serratus_M_contig949.20824.1 vs. uniprot
Match: A0A835YM98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM98_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.640e-16 Identity = 54/99 (54.55%), Postives = 77/99 (77.78%), Query Frame = 1
Query: 2431 EALSELKRLHRDEIEDVRRRSADSRTLDTLAGQVQASAGAVKLLQAEILDRKKASEVSREGHMEARERLVKELEHSARRAQQTAEDEVQRLQGTLMAMD 2727
EA++ LKR+H DE++ V+RR+ D+R L+ LA Q+Q+SAGA+ LQ ++L++++ ++V+R G +EARERLV ELE SARR+Q AE EV RL G L AMD
Sbjct: 691 EAIAALKRVHADEMDAVKRRAGDARALEGLAQQIQSSAGALTQLQGQVLEQRRGADVARTGQLEARERLVGELEGSARRSQLAAEQEVTRLHGVLAAMD 789 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig949.20824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig949.20824.1 >prot_F-serratus_M_contig949.20824.1 ID=prot_F-serratus_M_contig949.20824.1|Name=mRNA_F-serratus_M_contig949.20824.1|organism=Fucus serratus male|type=polypeptide|length=1390bp MGATAGAKGTKSGGEAAEAAALLLDSGDSFGLSKPKTQGRERVSKPDSSGback to top mRNA from alignment at F-serratus_M_contig949:223972..254758+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig949.20824.1 ID=mRNA_F-serratus_M_contig949.20824.1|Name=mRNA_F-serratus_M_contig949.20824.1|organism=Fucus serratus male|type=mRNA|length=30787bp|location=Sequence derived from alignment at F-serratus_M_contig949:223972..254758+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig949:223972..254758+ >mRNA_F-serratus_M_contig949.20824.1 ID=mRNA_F-serratus_M_contig949.20824.1|Name=mRNA_F-serratus_M_contig949.20824.1|organism=Fucus serratus male|type=CDS|length=8340bp|location=Sequence derived from alignment at F-serratus_M_contig949:223972..254758+ (Fucus serratus male)back to top |