mRNA_F-serratus_M_contig947.20809.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig947.20809.1
Unique NamemRNA_F-serratus_M_contig947.20809.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig947.20809.1 vs. uniprot
Match: UPI001CCB45E4 (NADAR family protein n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CCB45E4)

HSP 1 Score: 142 bits (358), Expect = 1.180e-40
Identity = 73/129 (56.59%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 SPFTADLVEYNCAEQFKMASKARLFGDSSTLSAILATDDPREHKRLGRQVHHFDHDSWSRERENIAFQGNLAKFSQKVDFRLTLLHTGDRRLAEANPHDNIWGIGLKASDHRSSSPSMCRGSNLLGQAL 387
            S F  D V Y CAEQF MA KARLFGD +T + ILATD PR+HK LGR+V  F    W RE   I  +GN AKF Q  D R  LL TGD+ L EA+P D IWG+GL+A D R    S  RG NLLG+AL
Sbjct:   33 SRFVVDGVTYGCAEQFMMAEKARLFGDEATRAKILATDSPRQHKALGREVAGFVQAVWERECLEIVVRGNRAKFGQDPDLRAALLATGDKLLVEASPLDRIWGVGLRADDPRIHDTSRWRGKNLLGEAL 161          
BLAST of mRNA_F-serratus_M_contig947.20809.1 vs. uniprot
Match: H8MLP1_CORCM (NADAR domain-containing protein n=10 Tax=Corallococcus TaxID=83461 RepID=H8MLP1_CORCM)

HSP 1 Score: 133 bits (334), Expect = 4.400e-37
Identity = 67/129 (51.94%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    1 SPFTADLVEYNCAEQFKMASKARLFGDSSTLSAILATDDPREHKRLGRQVHHFDHDSWSRERENIAFQGNLAKFSQKVDFRLTLLHTGDRRLAEANPHDNIWGIGLKASDHRSSSPSMCRGSNLLGQAL 387
            S FT D V Y CAEQ+ MA KARLFGD+  L  +L    P++HK LGR+V  FD   W RERE I ++GN AKF+Q       LL T    L EA+P D IWG+GL A D R   PS  RG NLLG+ L
Sbjct:   25 SVFTVDGVRYTCAEQYMMAGKARLFGDTRVLDQVLRAATPKQHKALGRKVSPFDAALWERERERIVYEGNHAKFTQHRHLLEALLATAGTELVEASPLDRIWGVGLSAEDPRIQDPSTWRGLNLLGKVL 153          
BLAST of mRNA_F-serratus_M_contig947.20809.1 vs. uniprot
Match: A0A0H4WPI7_9DELT (GTP cyclohydrolase II n=1 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4WPI7_9DELT)

HSP 1 Score: 132 bits (332), Expect = 7.870e-37
Identity = 64/129 (49.61%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 SPFTADLVEYNCAEQFKMASKARLFGDSSTLSAILATDDPREHKRLGRQVHHFDHDSWSRERENIAFQGNLAKFSQKVDFRLTLLHTGDRRLAEANPHDNIWGIGLKASDHRSSSPSMCRGSNLLGQAL 387
            S F  D   Y CAEQ+ MA KARLFGD+  L+ ILA++ P+ HK LGR+V HFD   W + RE I ++GN AKF+Q       LL T    L EA+P D IWG+GL   D R  +P+  RG NLLG+ L
Sbjct:   25 SAFEVDGARYVCAEQYMMAGKARLFGDTEVLAKILASESPKTHKALGRKVRHFDAAKWEQAREQIVYEGNRAKFTQNPALLEALLATAGTELVEASPMDRIWGVGLSEEDPRIQNPATWRGLNLLGKVL 153          
BLAST of mRNA_F-serratus_M_contig947.20809.1 vs. uniprot
Match: A0A3T0VW59_9GAMM (NADAR family protein n=3 Tax=unclassified Hahella TaxID=2624107 RepID=A0A3T0VW59_9GAMM)

HSP 1 Score: 133 bits (334), Expect = 8.050e-37
Identity = 63/129 (48.84%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 SPFTADLVEYNCAEQFKMASKARLFGDSSTLSAILATDDPREHKRLGRQVHHFDHDSWSRERENIAFQGNLAKFSQKVDFRLTLLHTGDRRLAEANPHDNIWGIGLKASDHRSSSPSMCRGSNLLGQAL 387
            S F    +++NCAEQF M SKA+LFGD ++  +ILA  DP++ K  GR V +FD  +W   +E I FQGN+AKFSQ  D + TL+ TGD  L EA+P+D +WGIG+   D   + P   +G NLLG+AL
Sbjct:   47 SKFEVAGIDFNCAEQFMMYSKAKLFGDETSALSILAATDPKQQKVTGRNVLNFDQKTWDLFKEAIVFQGNMAKFSQNPDLQETLISTGDYYLVEASPYDKVWGIGMAVEDKGVNDPINWKGQNLLGEAL 175          
BLAST of mRNA_F-serratus_M_contig947.20809.1 vs. uniprot
Match: A0A8B6CD26_MYTGA (NADAR domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6CD26_MYTGA)

HSP 1 Score: 136 bits (343), Expect = 7.710e-36
Identity = 68/129 (52.71%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 SPFTADLVEYNCAEQFKMASKARLFGDSSTLSAILATDDPREHKRLGRQVHHFDHDSWSRERENIAFQGNLAKFSQKVDFRLTLLHTGDRRLAEANPHDNIWGIGLKASDHRSSSPSMCRGSNLLGQAL 387
            S FT D + +NC EQF M SKA+LF D  T S ILA  +PREHKRLGRQV +FD ++W     +I  +GN AKF Q  D   T+L T  + LAEA+P D IWGIGL A D R+ +    +G NLLG AL
Sbjct:  266 SNFTVDGITFNCTEQFMMYSKAKLFKDKETASEILAEHEPREHKRLGRQVKNFDQNTWDDNCMDIVIRGNKAKFEQNEDLMKTILKTFPKTLAEASPFDTIWGIGLSADDPRALNKETWKGKNLLGHAL 394          
BLAST of mRNA_F-serratus_M_contig947.20809.1 vs. uniprot
Match: A0A554FW78_9DELT (NADAR family protein n=1 Tax=Corallococcus sp. Z5C101001 TaxID=2596829 RepID=A0A554FW78_9DELT)

HSP 1 Score: 129 bits (324), Expect = 1.400e-35
Identity = 64/127 (50.39%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    7 FTADLVEYNCAEQFKMASKARLFGDSSTLSAILATDDPREHKRLGRQVHHFDHDSWSRERENIAFQGNLAKFSQKVDFRLTLLHTGDRRLAEANPHDNIWGIGLKASDHRSSSPSMCRGSNLLGQAL 387
            F  + V Y CAEQ+ MA KARLFGD+  L  +L    P++HK LGR+V  FD   W RERE I ++GN AKF+Q  D    LL T    L EA+P D IWG+GL   D R   P+  RG NLLGQ L
Sbjct:   26 FEVEGVRYTCAEQYMMAGKARLFGDTRVLEQVLRAATPKQHKALGRKVSPFDAGLWERERERIVYEGNHAKFTQHRDLLDALLATAGTELVEASPLDRIWGVGLGVEDPRIQDPTRWRGLNLLGQVL 152          
BLAST of mRNA_F-serratus_M_contig947.20809.1 vs. uniprot
Match: A0A6H5KVV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV6_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.420e-35
Identity = 65/127 (51.18%), Postives = 84/127 (66.14%), Query Frame = 1
Query:    7 FTADLVEYNCAEQFKMASKARLFGDSSTLSAILATDDPREHKRLGRQVHHFDHDSWSRERENIAFQGNLAKFSQKVDFRLTLLHTGDRRLAEANPHDNIWGIGLKASDHRSSSPSMCRGSNLLGQAL 387
            FT   + Y C EQF MA KA +FGD +  + I++T DPREHK LGR+V  FDH  W   RE++ F    AK +Q  D R  LL TGD+++AEA+PHD +WGIG+ A D R++SPS   G NLLG+A 
Sbjct:  220 FTVHGIRYVCGEQFMMAEKACIFGDDAAYAKIMSTSDPREHKSLGRRVRRFDHALWELRREDVVFSLLYAKLAQNADARERLLATGDKQMAEASPHDGLWGIGVDAFDPRAASPSKWTGKNLLGKAF 346          
BLAST of mRNA_F-serratus_M_contig947.20809.1 vs. uniprot
Match: A0A5S9INE9_9BACT (NADAR domain-containing protein n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9INE9_9BACT)

HSP 1 Score: 129 bits (324), Expect = 2.150e-35
Identity = 63/130 (48.46%), Postives = 81/130 (62.31%), Query Frame = 1
Query:    1 SPFTADLVEYNCAEQFKMASKARLFGDSSTLSAILATDDPREHKRLGRQVHHFDHDSWSRERENIAFQGNLAKFSQKVDFRLTLLHTGDRRLAEANPHDNIWGIGLKASDHRSSSPSMCRGSNLLGQALE 390
            SPF  D V YNCAEQ+ MA KARLF D      I+ +D PRE K+LG++V  F   +W  ER  I F+GN+AKFSQ +D +  LL T +R L EA+P D IWGIG  A+   +   +   G NLLG+ L+
Sbjct:   45 SPFEVDGVHYNCAEQYMMAEKARLFQDEKNEKLIMESDCPREQKKLGKRVRGFKEKTWLEERFAIVFRGNMAKFSQNLDLKQALLETENRTLVEASPLDKIWGIGFAANQEEAYDETKWNGLNLLGKVLQ 174          
BLAST of mRNA_F-serratus_M_contig947.20809.1 vs. uniprot
Match: A0A8B6FNU1_MYTGA (NADAR domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6FNU1_MYTGA)

HSP 1 Score: 128 bits (322), Expect = 2.160e-35
Identity = 64/127 (50.39%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    7 FTADLVEYNCAEQFKMASKARLFGDSSTLSAILATDDPREHKRLGRQVHHFDHDSWSRERENIAFQGNLAKFSQKVDFRLTLLHTGDRRLAEANPHDNIWGIGLKASDHRSSSPSMCRGSNLLGQAL 387
            F  D  +YNCAEQ+ M  KA L GD  T S I+ATD PRE KRLGR V +FD   W+ +  NI  +GN AKFSQ  + +  LL T  R+LAEAN +D IWGIG   +D  +  PS   G N LG+ L
Sbjct:   24 FHVDETKYNCAEQYMMHGKALLMGDGETASLIMATDSPREQKRLGRSVKNFDQTLWNEKCRNIVIEGNFAKFSQNEELKKKLLETYPRQLAEANKNDRIWGIGRDWTDPLAKDPSKWLGMNWLGECL 150          
BLAST of mRNA_F-serratus_M_contig947.20809.1 vs. uniprot
Match: A0A3A8ICA1_9DELT (NADAR family protein n=1 Tax=Corallococcus terminator TaxID=2316733 RepID=A0A3A8ICA1_9DELT)

HSP 1 Score: 128 bits (322), Expect = 2.810e-35
Identity = 63/127 (49.61%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    7 FTADLVEYNCAEQFKMASKARLFGDSSTLSAILATDDPREHKRLGRQVHHFDHDSWSRERENIAFQGNLAKFSQKVDFRLTLLHTGDRRLAEANPHDNIWGIGLKASDHRSSSPSMCRGSNLLGQAL 387
            F  + V Y CAEQ+ MA KARLFGD+  L  +L    P++HK LGR+V  FD   W RERE I ++GN AKF+Q       LL T    L EA+P D IWG+GL A D R   P+  RG NLLG+ L
Sbjct:   25 FEVEGVRYTCAEQYMMAGKARLFGDTRVLEQVLRATTPKQHKALGRKVSPFDAGLWERERERIVYEGNHAKFTQHPSLLDALLATAGTELVEASPMDRIWGVGLGAEDPRIQDPATWRGMNLLGKVL 151          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig947.20809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CCB45E41.180e-4056.59NADAR family protein n=1 Tax=Nannocystis pusilla T... [more]
H8MLP1_CORCM4.400e-3751.94NADAR domain-containing protein n=10 Tax=Coralloco... [more]
A0A0H4WPI7_9DELT7.870e-3749.61GTP cyclohydrolase II n=1 Tax=Myxococcus hansupus ... [more]
A0A3T0VW59_9GAMM8.050e-3748.84NADAR family protein n=3 Tax=unclassified Hahella ... [more]
A0A8B6CD26_MYTGA7.710e-3652.71NADAR domain-containing protein n=1 Tax=Mytilus ga... [more]
A0A554FW78_9DELT1.400e-3550.39NADAR family protein n=1 Tax=Corallococcus sp. Z5C... [more]
A0A6H5KVV6_9PHAE1.420e-3551.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5S9INE9_9BACT2.150e-3548.46NADAR domain-containing protein n=1 Tax=Candidatus... [more]
A0A8B6FNU1_MYTGA2.160e-3550.39NADAR domain-containing protein n=1 Tax=Mytilus ga... [more]
A0A3A8ICA1_9DELT2.810e-3549.61NADAR family protein n=1 Tax=Corallococcus termina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig947contigF-serratus_M_contig947:244813..245205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue4.9e-29
Seed eggNOG ortholog2880.D7FYJ3
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF1768)
EggNOG OGs2S4FY@2759,COG3236@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size393
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932703.0461993-CDS-F-serratus_M_contig947:244812..2452051622932703.0461993-CDS-F-serratus_M_contig947:244812..245205Fucus serratus maleCDSF-serratus_M_contig947 244813..245205 -
1690964431.0062973-CDS-F-serratus_M_contig947:244812..2452051690964431.0062973-CDS-F-serratus_M_contig947:244812..245205Fucus serratus maleCDSF-serratus_M_contig947 244813..245205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig947.20809.1prot_F-serratus_M_contig947.20809.1Fucus serratus malepolypeptideF-serratus_M_contig947 244813..245205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig947.20809.1

>prot_F-serratus_M_contig947.20809.1 ID=prot_F-serratus_M_contig947.20809.1|Name=mRNA_F-serratus_M_contig947.20809.1|organism=Fucus serratus male|type=polypeptide|length=131bp
SPFTADLVEYNCAEQFKMASKARLFGDSSTLSAILATDDPREHKRLGRQV
HHFDHDSWSRERENIAFQGNLAKFSQKVDFRLTLLHTGDRRLAEANPHDN
IWGIGLKASDHRSSSPSMCRGSNLLGQALE*
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mRNA from alignment at F-serratus_M_contig947:244813..245205-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig947.20809.1 ID=mRNA_F-serratus_M_contig947.20809.1|Name=mRNA_F-serratus_M_contig947.20809.1|organism=Fucus serratus male|type=mRNA|length=393bp|location=Sequence derived from alignment at F-serratus_M_contig947:244813..245205- (Fucus serratus male)
TCACCATTTACAGCGGACCTCGTTGAATATAATTGTGCTGAACAATTTAA AATGGCCTCGAAAGCTCGCCTATTCGGTGATAGCTCGACGCTCTCCGCAA TACTCGCCACTGACGATCCCCGTGAGCACAAACGCCTCGGACGTCAGGTA CACCACTTCGATCATGACTCGTGGTCGCGCGAACGAGAAAACATCGCTTT CCAAGGCAACCTAGCGAAATTCTCACAGAAAGTCGATTTTCGCTTGACCC TGCTACACACCGGCGACCGGCGACTCGCCGAAGCAAACCCTCATGATAAC ATATGGGGTATCGGCTTGAAAGCAAGCGACCACCGCTCTTCCTCTCCAAG CATGTGCCGCGGCTCTAACTTACTCGGTCAGGCACTGGAATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig947:244813..245205-

>mRNA_F-serratus_M_contig947.20809.1 ID=mRNA_F-serratus_M_contig947.20809.1|Name=mRNA_F-serratus_M_contig947.20809.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig947:244813..245205- (Fucus serratus male)
TCACCATTTACAGCGGACCTCGTTGAATATAATTGTGCTGAACAATTTAA
AATGGCCTCGAAAGCTCGCCTATTCGGTGATAGCTCGACGCTCTCCGCAA
TACTCGCCACTGACGATCCCCGTGAGCACAAACGCCTCGGACGTCAGGTA
CACCACTTCGATCATGACTCGTGGTCGCGCGAACGAGAAAACATCGCTTT
CCAAGGCAACCTAGCGAAATTCTCACAGAAAGTCGATTTTCGCTTGACCC
TGCTACACACCGGCGACCGGCGACTCGCCGAAGCAAACCCTCATGATAAC
ATATGGGGTATCGGCTTGAAAGCAAGCGACCACCGCTCTTCCTCTCCAAG
CATGTGCCGCGGCTCTAACTTACTCGGTCAGGCACTGGAATAATCACCAT
TTACAGCGGACCTCGTTGAATATAATTGTGCTGAACAATTTAAAATGGCC
TCGAAAGCTCGCCTATTCGGTGATAGCTCGACGCTCTCCGCAATACTCGC
CACTGACGATCCCCGTGAGCACAAACGCCTCGGACGTCAGGTACACCACT
TCGATCATGACTCGTGGTCGCGCGAACGAGAAAACATCGCTTTCCAAGGC
AACCTAGCGAAATTCTCACAGAAAGTCGATTTTCGCTTGACCCTGCTACA
CACCGGCGACCGGCGACTCGCCGAAGCAAACCCTCATGATAACATATGGG
GTATCGGCTTGAAAGCAAGCGACCACCGCTCTTCCTCTCCAAGCATGTGC
CGCGGCTCTAACTTACTCGGTCAGGCACTGGAATAA
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