mRNA_F-serratus_M_contig947.20807.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig947.20807.1
Unique NamemRNA_F-serratus_M_contig947.20807.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig947.20807.1 vs. uniprot
Match: D8LTP4_ECTSI (Putative Leucine Rich Repeat Protein Kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP4_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.230e-20
Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 GDDGAIGDAERYLLEDVHDSVSDLVGIMQTYTSKGSLSKLFLSSLFKHRQEVAEAAIEKAISRLQLGLQVQAGHDLASVGRNIRKG 258
            GDD A+    R LL+DV DS++DL+ I+++Y SK +LSK+F+SSL K RQE AE AI  A+ RLQLGLQV+ G DLASVG  +++G
Sbjct:  492 GDDQAV----RVLLDDVQDSIADLLQIIESYKSKNALSKVFVSSLCKKRQEEAEVAINAAVQRLQLGLQVRVGQDLASVGEAVQEG 573
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BLAST of mRNA_F-serratus_M_contig947.20807.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.700e-19
Identity = 41/78 (52.56%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:   19 GDAERYLLEDVHDSVSDLVGIMQTYTSKGSLSKLFLSSLFKHRQEVAEAAIEKAISRLQLGLQVQAGHDLASVGRNIR 252
            G+  R L+EDVHD++ DLV +++T+ SK  LSKLFLS+LFK R++  +A +++AI+RLQLGLQ+Q GHD+ SV  +++
Sbjct:  661 GEVARVLIEDVHDAIFDLVELIKTFQSKNKLSKLFLSTLFKRRKDELDAVVDRAITRLQLGLQLQMGHDMGSVKDSMK 738
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BLAST of mRNA_F-serratus_M_contig947.20807.1 vs. uniprot
Match: A0A6H5JVI4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI4_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.280e-18
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   10 GAIGDAE--RYLLEDVHDSVSDLVGIMQTYTSKGSLSKLFLSSLFKHRQEVAEAAIEKAISRLQLGLQVQAGHDLASVGRNIRKG 258
            G  GD++    LL+DV DS++DL+ I+++Y SK SLSK+F+S+L K RQE AE AI  A+ RLQLGLQV  G +LASVG  +++G
Sbjct:  617 GGKGDSQAVHVLLDDVQDSIADLLQIIESYKSKNSLSKVFVSTLCKKRQEEAEVAINAAVQRLQLGLQVHVGQNLASVGEAVQEG 701
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BLAST of mRNA_F-serratus_M_contig947.20807.1 vs. uniprot
Match: D8LTP7_ECTSI (Two component regulator three Y domain protein/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP7_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 6.040e-18
Identity = 43/78 (55.13%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:   25 AERYLLEDVHDSVSDLVGIMQTYTSKGSLSKLFLSSLFKHRQEVAEAAIEKAISRLQLGLQVQAGHDLASVGRNIRKG 258
            A   LL+DV DS++DL+ I+++Y SK +LSK+F+S+L K RQE AE AI  A+ RLQLGLQV+ G +LASVG  +++G
Sbjct:  485 AVHVLLDDVQDSIADLLQIIESYKSKNALSKVFVSTLCKKRQEEAEVAINAAVQRLQLGLQVRVGQNLASVGEAVQEG 562
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BLAST of mRNA_F-serratus_M_contig947.20807.1 vs. uniprot
Match: D7G7F2_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F2_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 5.400e-17
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   16 IGDAERYLLEDVHDSVSDLVGIMQTYTSKGSLSKLFLSSLFKHRQEVAEAAIEKAISRLQLGLQVQAGHDLASV 237
            IG+  R ++EDVH ++ DLV +++TY SK  LS+LF+S+LFK RQE   A +++AI RLQLGLQ+Q G D+ +V
Sbjct:  761 IGEVARGMIEDVHGAIFDLVQLIKTYQSKNKLSRLFMSTLFKRRQEELNAVVDQAIMRLQLGLQLQVGQDVGAV 834
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BLAST of mRNA_F-serratus_M_contig947.20807.1 vs. uniprot
Match: A0A6H5JSI8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 9.980e-17
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   16 IGDAERYLLEDVHDSVSDLVGIMQTYTSKGSLSKLFLSSLFKHRQEVAEAAIEKAISRLQLGLQVQAGHDLASV 237
            IG   R ++EDVH ++ DLV +++TY SK  LS+LF+S+LFK RQE  +A +++AI RLQLGLQ+Q G D+ +V
Sbjct:  491 IGSVARGMIEDVHGAIFDLVQLIKTYQSKTKLSRLFMSTLFKRRQEELDAVVDQAIMRLQLGLQLQVGQDVGAV 564
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BLAST of mRNA_F-serratus_M_contig947.20807.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.870e-16
Identity = 38/74 (51.35%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   16 IGDAERYLLEDVHDSVSDLVGIMQTYTSKGSLSKLFLSSLFKHRQEVAEAAIEKAISRLQLGLQVQAGHDLASV 237
            IG+  R ++EDVH ++ DLV +++TY SK  LS+LF+S+LFK RQE   A +++A+ RLQLGLQ+Q G D+ +V
Sbjct:  583 IGEVARGMIEDVHGAIFDLVQLIKTYQSKNKLSRLFMSTLFKRRQEELNAIVDQAMMRLQLGLQLQVGQDVGAV 656
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BLAST of mRNA_F-serratus_M_contig947.20807.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 6.480e-16
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    7 DGAIGDAERYLLEDVHDSVSDLVGIMQTYTSKGSLSKLFLSSLFKHRQEVAEAAIEKAISRLQLGLQVQAGHDLASVGRNIRKG 258
            +   G   R L++DVH+++ DLV +++TY SK  LSK+ +S+LFK RQ+  +A +++AI RLQLGLQVQ G D+ + G ++ KG
Sbjct:  546 ENTTGKVARTLIDDVHEAIFDLVELIKTYQSKNKLSKVLMSTLFKRRQDELDAVVDRAIVRLQLGLQVQVGQDVKA-GMDLYKG 628
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BLAST of mRNA_F-serratus_M_contig947.20807.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.330e-13
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   28 ERYLLEDVHDSVSDLVGIMQTYTSKGSLSKLFLSSLFKHRQEVAEAAIEKAISRLQLGLQVQAGHDLASVGRNI 249
            +R L+++VH ++ DLV +++TY S   LSK+ +S+ FK RQ   EAAI++A+SRLQ GLQVQ G D+  V   I
Sbjct:  808 QRDLIDEVHYAIEDLVELIKTYQSMNRLSKVLMSTSFKWRQNDLEAAIDRALSRLQFGLQVQVGDDVRGVKEGI 881
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BLAST of mRNA_F-serratus_M_contig947.20807.1 vs. uniprot
Match: A0A6H5K0B7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 9.520e-9
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   19 GDAERYLLEDVHDSVSDLVGIMQTYTSKGSLSKLFLSSLFKHRQEVAEAAIEKAISRLQLGLQVQAGHDLASV 237
            G A R LL+DV DS++DL+ I+++Y SK +LS++F+SSL K RQE AE A++ A+        V+A   L +V
Sbjct:  163 GQAVRVLLDDVQDSIADLLQIIESYKSKNALSEVFVSSLCKKRQEEAEVAMKTAVQSFHSS-SVEAHESLPNV 234
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig947.20807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LTP4_ECTSI2.230e-2056.98Putative Leucine Rich Repeat Protein Kinase (Parti... [more]
D7G7X7_ECTSI2.700e-1952.56ATP binding / amino acid binding / protein kinase/... [more]
A0A6H5JVI4_9PHAE1.280e-1854.12Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LTP7_ECTSI6.040e-1855.13Two component regulator three Y domain protein/ le... [more]
D7G7F2_ECTSI5.400e-1752.70Tyrosine kinase specific for activated (GTP-bound)... [more]
A0A6H5JSI8_9PHAE9.980e-1752.70Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FL57_ECTSI1.870e-1651.35Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]
D8LRE9_ECTSI6.480e-1646.43Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
A0A6H5KY76_9PHAE3.330e-1348.65Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K0B7_9PHAE9.520e-945.21Protein kinase domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig947contigF-serratus_M_contig947:153481..154138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog2880.D8LTP4
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932702.8253257-CDS-F-serratus_M_contig947:153480..1536751622932702.8253257-CDS-F-serratus_M_contig947:153480..153675Fucus serratus maleCDSF-serratus_M_contig947 153481..153675 +
1690964430.912436-CDS-F-serratus_M_contig947:153480..1536751690964430.912436-CDS-F-serratus_M_contig947:153480..153675Fucus serratus maleCDSF-serratus_M_contig947 153481..153675 +
1622932702.844442-CDS-F-serratus_M_contig947:154075..1541381622932702.844442-CDS-F-serratus_M_contig947:154075..154138Fucus serratus maleCDSF-serratus_M_contig947 154076..154138 +
1690964430.926653-CDS-F-serratus_M_contig947:154075..1541381690964430.926653-CDS-F-serratus_M_contig947:154075..154138Fucus serratus maleCDSF-serratus_M_contig947 154076..154138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig947.20807.1prot_F-serratus_M_contig947.20807.1Fucus serratus malepolypeptideF-serratus_M_contig947 153481..154138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig947.20807.1

>prot_F-serratus_M_contig947.20807.1 ID=prot_F-serratus_M_contig947.20807.1|Name=mRNA_F-serratus_M_contig947.20807.1|organism=Fucus serratus male|type=polypeptide|length=86bp
GDDGAIGDAERYLLEDVHDSVSDLVGIMQTYTSKGSLSKLFLSSLFKHRQ
EVAEAAIEKAISRLQLGLQVQAGHDLASVGRNIRKG
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mRNA from alignment at F-serratus_M_contig947:153481..154138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig947.20807.1 ID=mRNA_F-serratus_M_contig947.20807.1|Name=mRNA_F-serratus_M_contig947.20807.1|organism=Fucus serratus male|type=mRNA|length=658bp|location=Sequence derived from alignment at F-serratus_M_contig947:153481..154138+ (Fucus serratus male)
GGCGACGATGGCGCCATCGGAGATGCCGAACGATACTTGCTCGAAGACGT
TCATGACTCCGTGAGTGATCTCGTTGGCATCATGCAGACTTATACGTCAA
AGGGTTCCCTTTCTAAGCTCTTCCTGTCATCACTCTTCAAGCACCGCCAG
GAGGTGGCCGAAGCTGCTATCGAAAAAGCCATTTCGCGCCTCCAGGTTGG
ATGGACGAACGGACAAATAATAGTGTTTCGGCGTGGTGGTTGAGCAATTT
CTTGTTAGCCACTTATTTGATGCCCGTGTTTATATATTGGCTCGCGACGA
GCAGGCCTCTGCAGTAATCGACAGGTCGGCCATACCGTTATAACCATAAT
GTGCTACGAAGTATTAGTTATAGTGGGCTCCAACGCATGCAAAATTATCG
ATAGACTTGCCGCAGCCCAAAGCGATAGCACGCGCAGTCTACGCCATATC
GTTTAACCAACTTGTGCACATAGACGTTTCCTATTTCGGGACGTACATAT
CCGTGCATTTTCCCTCCGCAGACTCCATCCCATCTGCTGGAACCGACTCG
CCTTGCCTGGCCTATTCCGCATTCGATTATGTGACTCACACACAGTTGGG
TCTACAAGTCCAAGCAGGACACGACCTTGCCTCCGTTGGTCGGAATATTC
GTAAGGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig947:153481..154138+

>mRNA_F-serratus_M_contig947.20807.1 ID=mRNA_F-serratus_M_contig947.20807.1|Name=mRNA_F-serratus_M_contig947.20807.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig947:153481..154138+ (Fucus serratus male)
GGCGACGATGGCGCCATCGGAGATGCCGAACGATACTTGCTCGAAGACGT
TCATGACTCCGTGAGTGATCTCGTTGGCATCATGCAGACTTATACGTCAA
AGGGTTCCCTTTCTAAGCTCTTCCTGTCATCACTCTTCAAGCACCGCCAG
GAGGTGGCCGAAGCTGCTATCGAAAAAGCCATTTCGCGCCTCCAGGGCGA
CGATGGCGCCATCGGAGATGCCGAACGATACTTGCTCGAAGACGTTCATG
ACTCCGTGAGTGATCTCGTTGGCATCATGCAGACTTATACGTCAAAGGGT
TCCCTTTCTAAGCTCTTCCTGTCATCACTCTTCAAGCACCGCCAGGAGGT
GGCCGAAGCTGCTATCGAAAAAGCCATTTCGCGCCTCCAGTTGGGTCTAC
AAGTCCAAGCAGGACACGACCTTGCCTCCGTTGGTCGGAATATTCGTAAG
GGATTGGGTCTACAAGTCCAAGCAGGACACGACCTTGCCTCCGTTGGTCG
GAATATTCGTAAGGGA
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