mRNA_F-serratus_M_contig944.20804.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig944.20804.1
Unique NamemRNA_F-serratus_M_contig944.20804.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig944.20804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig944contigF-serratus_M_contig944:242666..243719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size123
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig944.20804.1prot_F-serratus_M_contig944.20804.1Fucus serratus malepolypeptideF-serratus_M_contig944 242709..243719 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932701.9693136-UTR-F-serratus_M_contig944:242665..2427081622932701.9693136-UTR-F-serratus_M_contig944:242665..242708Fucus serratus maleUTRF-serratus_M_contig944 242666..242708 -
1690964430.5060635-UTR-F-serratus_M_contig944:242665..2427081690964430.5060635-UTR-F-serratus_M_contig944:242665..242708Fucus serratus maleUTRF-serratus_M_contig944 242666..242708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932701.9908016-CDS-F-serratus_M_contig944:242708..2427491622932701.9908016-CDS-F-serratus_M_contig944:242708..242749Fucus serratus maleCDSF-serratus_M_contig944 242709..242749 -
1690964430.5190384-CDS-F-serratus_M_contig944:242708..2427491690964430.5190384-CDS-F-serratus_M_contig944:242708..242749Fucus serratus maleCDSF-serratus_M_contig944 242709..242749 -
1622932702.0121188-CDS-F-serratus_M_contig944:243637..2437191622932702.0121188-CDS-F-serratus_M_contig944:243637..243719Fucus serratus maleCDSF-serratus_M_contig944 243638..243719 -
1690964430.53238-CDS-F-serratus_M_contig944:243637..2437191690964430.53238-CDS-F-serratus_M_contig944:243637..243719Fucus serratus maleCDSF-serratus_M_contig944 243638..243719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig944.20804.1

>prot_F-serratus_M_contig944.20804.1 ID=prot_F-serratus_M_contig944.20804.1|Name=mRNA_F-serratus_M_contig944.20804.1|organism=Fucus serratus male|type=polypeptide|length=41bp
EHRGREIRSGCDAQTSVRLLLCATPIISDDFSVQAERPET*
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mRNA from alignment at F-serratus_M_contig944:242666..243719-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig944.20804.1 ID=mRNA_F-serratus_M_contig944.20804.1|Name=mRNA_F-serratus_M_contig944.20804.1|organism=Fucus serratus male|type=mRNA|length=1054bp|location=Sequence derived from alignment at F-serratus_M_contig944:242666..243719- (Fucus serratus male)
GAGCACCGAGGGAGAGAGATCAGGAGTGGATGCGACGCCCAGACGAGCGT
GAGACTCCTCCTGTGCGCAACACCAATAATAAGTAAGCGATGGCTTCTTT
CTATGATTTGAAGAGAATGGGATATGCAGAGACGAGCAAAGAAATATGTG
ATGCTCTTCGCCATGTCTTAAATGTATTGAAAGAATACCACGATCAAGAC
GCAATATATGATATCATGCTGGAGACGGATGCGGAACGGATGCGCCGACA
TAAATCAAACGAGATCGCAGAAGTTGTTGCTGCTCATCGCCTGGATAAGA
TGAAGACTTTCCTCGCAAACCATGAGCTAACATCCTGGCGCAGGGAAAAC
GGTTTCGATCTCCAGCCAGTAGTGCTCGGTAAACCCCCCCCTACACGCGC
AGAGGACAATGCATGTCTACGGCTTGAACTACTGAAGTTGCAAGGTGCAC
TTTCAGCATCAGCAAAAATTCCCGTTTCGCAGCCAGATGTGCGTATTATT
TTGAAGGATGAAGACAGAGAGACCAGAATGGACCTGGGGCTAGAACAAGA
GCCCAAACTATCACCATCAGCTGACCCGGACAGCGAAACAACCGGAGAAC
GGAGTACCCCGCAAGGGGGAAATTGGGAGGCTAGACTGAGGATTGCCGAC
GGCAGCATGCTCGTCGACATGAGGTCCAAACAAGGGTCAGATGAAAACCC
GGAACGCGAGACGGTTCCGGAGGAATCAAACATCGCCGCTCACGAGGAAG
CGGCAATCGATCAACATCGGCGAGGGACAAAAGCGAGCCAAGAGAATAAA
CAGTACGACCCCGGGGGCCAAGAAGAGGACTTGCTGCCTTGTAAAAGCAG
CCTGTACAAGTCATTTTTCTTTTTCATCTGGGGGAACTGGGAGCATCGTC
TACCTGTGTTCTGTTTCTGTTTCTCGTTTTCGTGTGTTCCCGTATTTTTC
CCAAATTCATTTTTCCACAGGTGATGATTTTTCAGTCCAAGCTGAAAGAC
CTGAGACATAACGGATAAAGACAAGAAGAACAAGGCGCTGATGTGCGCGA
CCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig944:242666..243719-

>mRNA_F-serratus_M_contig944.20804.1 ID=mRNA_F-serratus_M_contig944.20804.1|Name=mRNA_F-serratus_M_contig944.20804.1|organism=Fucus serratus male|type=CDS|length=246bp|location=Sequence derived from alignment at F-serratus_M_contig944:242666..243719- (Fucus serratus male)
GAGCACCGAGGGAGAGAGATCAGGAGTGGATGCGACGCCCAGACGAGCGT
GAGACTCCTCCTGTGCGCAACACCAATAATAAGAGCACCGAGGGAGAGAG
ATCAGGAGTGGATGCGACGCCCAGACGAGCGTGAGACTCCTCCTGTGCGC
AACACCAATAATAAGTGATGATTTTTCAGTCCAAGCTGAAAGACCTGAGA
CATAAGTGATGATTTTTCAGTCCAAGCTGAAAGACCTGAGACATAA
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