mRNA_F-serratus_M_contig93.20687.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig93.20687.1 vs. uniprot
Match: D8LMZ2_ECTSI (COG2350: Uncharacterized protein conserved in bacteria n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ2_ECTSI) HSP 1 Score: 466 bits (1200), Expect = 1.870e-154 Identity = 233/458 (50.87%), Postives = 316/458 (69.00%), Query Frame = 3 Query: 243 RHVENGDMAGFGWGWLRSGRRRRTCLEA-----GD-KGDDVLKMKSMGSSIKSEDKVLTGGEDDMRRAMFDMDPDSDRQGPMYFGTDGFDGPERLWDKPLEEIRFAECYVVFCIDREERPDEPKNFPFWGVRQAVHREHLKWARVLARALENDTDREAAVLWDRTILSPSKYKTIGNIMCVRAHSKEAAIRLLESDPFRAADLYETVSLYRYPYSTAGEFNWQLAAHPYVALSMDREGQSRVREDNFPRHLEYLGNTKRCTGVGPIFDPSLDKDDPASAPVGSLVFFNAATDEEARETVENDPLNEAGLFESMFIARFNDLDLSGLHLAYPSRHDPLRDIIAKEGLAVEDDFP-KDPDWRPFSNLTWLQAENDKRRDEEYLEKRKEFYEQRDIRLEYNRTNKDAKFYHGVYVYVGRRNETEWYDYWPTYLGPN-DEWNTERFDLKNSYPPVDIYEDDL 1592 R VE G G GW + RRR CL+A GD KGDD+L++K++ +++ ED+V ++ MRR MFDMDPDS +GPMYFG G E K EE+RF + Y+ FC+DREE DE KN+ WGVR H EH+KWAR+ R E+D DREA +LW+R++LSPSK + IGN+ C+R+++KE A+RLLE DP+R + L+ TVSLYRYPY+ G FNW L+ PY+AL MD++G +++RE N HLEY T+RC G GP+ L +D P + PVGSL+FFNA DEEARET E DP N+AGL++S+F+ARFN++DLSG+ L +R DP+RD++AKEGL E ++P K + F N+ WL+ E +K+++++Y+E R + Y+QRD R+E N+ A F GVYVY+G+R ETEWYDYWPT GP+ D E + + YPPVD +EDDL Sbjct: 76 RAVEGGRGVG-GWRSHGATRRRSGCLQAKNTPLGDGKGDDLLRLKNVAAAVPEEDRVDDHSDEAMRRLMFDMDPDSKDKGPMYFGDAGMYTDEVNHVKYPEEVRFPQSYLAFCVDREETEDEDKNYVTWGVRAKAHWEHVKWARIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKEGALRLLEEDPYRKSGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGSAKLREKNNDAHLEYYERTRRCIGEGPVLSSDLAEDSPRNKPVGSLMFFNAINDEEARETAEGDPFNQAGLYDSVFVARFNEIDLSGIGLVRANRIDPMRDMMAKEGLDRECEYPVKFGKYDLFENMKWLKTEVEKKQEQQYMEHRLKLYQQRDRRIEREEINEGALFRPGVYVYMGKRTETEWYDYWPTKAGPDADAAGEEFYTMDACYPPVDHFEDDL 532
BLAST of mRNA_F-serratus_M_contig93.20687.1 vs. uniprot
Match: A0A6H5JNB6_9PHAE (YCII domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB6_9PHAE) HSP 1 Score: 389 bits (1000), Expect = 7.310e-125 Identity = 209/482 (43.36%), Postives = 280/482 (58.09%), Query Frame = 3 Query: 417 MRRAMFDMDPDSDRQGPMYFGTDGFDGPERLWDKPLEEIRFAECYVVFCIDREERPDEPKNFPFWGVRQAVHREHLKWARVLARALENDTDREAAVLWDRTILSPSKYKTIGNIMCVRAHSK--------------------------EAAIRLLESDPFRAADLYETVSLYRYPYSTAGEFNWQLAAHPYVALSMDREGQSRVREDNFPRHLEYLGNTKR-CTGVGPIFDPSLDKDDPASAPVGSLVFFNAATDEEARETVENDPLNEAGLFESMFIARFNDLDLSGLHLAYPSRHDPLRDIIAKEGLAVEDDFP-KDPDWRPFSNLTWLQAENDKRRDEEYLEKRKEFYEQR-------------------------------------------------------------DIRLEYNRTNKDAKFYHGVYVYVGRRNETEWYDYWPTYLGPN-DEWNTERFDLKNSYPPVDIYEDDL 1592 MRR MFDMDPDS +GPMYFG G E K EE+RF + Y+ FC+DREE DE KN+ WGVR H EH+KWAR+ R E+D DREA +LW+R++LSPSK + IGN+ C+R+++K E A+RLLE DP+R + L+ TVSLYRYPY+ G FNW L+ PY+AL MD++G++++RE N HLEY T+R C G GPI L +D P + PVGSL+FFNA DEEARET E DP N+AGL++S+F+ARFN++DLSG+ L +R DP+RD++A+EGL E ++P K + F N+ WL+ E +K+++++Y+E R + Y+QR D R+E N+ A F GVYVY+G+R ETEWYDYWPT GP+ D E + + YPPVD +EDDL Sbjct: 23 MRRLMFDMDPDSKDKGPMYFGDAGMYTDEVNHVKYPEEVRFPQSYLAFCVDREETEDEDKNYVTWGVRAKAHWEHVKWARIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKASAIHLGYFYVLLRKIGSDEAVAGRKEGALRLLEEDPYRKSGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGKAKLREKNNDAHLEYYEKTRRRCIGEGPILSSDLAEDSPRNKPVGSLMFFNAINDEEARETAEGDPFNQAGLYDSVFVARFNEIDLSGIGLVRANRIDPMRDMMAQEGLDRECEYPVKFGKYDLFENMKWLKTEVEKKQEQQYMEHRLKLYQQRCVGGGAVVTSADDTPRWYDGMPSYGGRNVRAGTAVKAPVSAAVEGFSDVWLKAAHTVVVARDRRIEREEVNEGALFRPGVYVYMGKRTETEWYDYWPTKAGPDADAAGEEFYTMDACYPPVDHFEDDL 504
BLAST of mRNA_F-serratus_M_contig93.20687.1 vs. uniprot
Match: A0A7S1FVC6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FVC6_9STRA) HSP 1 Score: 114 bits (285), Expect = 3.060e-24 Identity = 84/238 (35.29%), Postives = 120/238 (50.42%), Query Frame = 3 Query: 633 REHLKWARVL-ARALENDTDREAAVLWDRTILSPSKYKTIGNIMCVRAHSKEAAIRLLESDPFRAADLY---------ETVSLYRYPYSTAGEFNWQ--LAAHPYVALSMDR-EGQSRVREDNFPRHLEYLGNTKRCTGVGPIFDPSLDKDDPASAP---VGSLVFFNAATDEEARETVENDPLNEAGLFESMFIARFNDLDLSGLHLAY------PSRHDPLRDIIAKE-GLAVEDD 1277 R W VL AR D D A V+WD +LSP + +GN+ C+ A + E A RL E +P +Y E +YR+ + + P +A DR EG +R HLEYL N+++ GP+FD + DD A+AP VGSLV FNA + E ARE V+NDP AGLFES+ + +N +D+SG A P+ D + I+ ++ G+ V++D Sbjct: 8 RPRTSWFHVLWAREQTLDADAPAEVIWDHALLSPDLQREVGNVACIDAKTPEDARRLAEEEP---RSVYFSDGNNRGAEATRVYRWNHVQDVDLRKDDGRGGFPCLAACFDRKEGVDGLRAATRKSHLEYLINSEKVIAAGPLFDIPREGDDNAAAPAAPVGSLVLFNAPSQEAAREFVDNDPYALAGLFESVGVNFYNTVDVSGKFFAPEKFAVDPTDVDQVTRIMLEDVGVDVDED 242
BLAST of mRNA_F-serratus_M_contig93.20687.1 vs. uniprot
Match: A0A7S2WMJ0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WMJ0_9STRA) HSP 1 Score: 103 bits (258), Expect = 2.500e-20 Identity = 101/346 (29.19%), Postives = 152/346 (43.93%), Query Frame = 3 Query: 369 SSIKSEDKVLTGG--------EDDMRRAMFDMDPDSDRQGPMYFGTDGFDGPER---LWDKPLEEIRFA-ECYVVFCIDRE-ERPDEPKNFPFWGVRQAVHREHLKWARVLARALEN-DTDREAAVLWDRTILSPSKYKTIGNIMCVRAHSKEAAIRLLESDPFRAADLYETVSLYRYPYSTAGEFNWQ------------LAAHPYVALSMDREGQ--SRVREDNFPRHLEYLGNTKRCTGVGPIFDPSLDKDDPASA-PVGSLVFFNAATDEEARETVENDPLNEAGLFESMFIARFNDLDLSGLHLA----YPSRHDP---LRDIIAKEGLAVEDDFPKDPDW 1298 S +KS++ V T G D + D D D FG G + E + + P+ R A +V DR D+ R + +H+ + R E +T+ +A VLW IL+ +TIG+ MC+ + + E A + L DP SL S F W+ + P + L+MDR+ S+VR HLEYL ++R GP+ P+ KDDPAS PVG L+ FNA +EA ENDPL +AGL+ SM + R+N LD++G + + + +P ++D + G V+D K +W Sbjct: 26 SIMKSKNWVSTTGLRMSFVADSSDYSTSESDYTSDEDINPDHQFGNQGDNDEEESPSIEEIPVPMSRNAGNRFVAMVFDRALSSSDQDDVMALHQQRIDLTEDHIMFCRKQNLFNETFNTESKADVLWSFQILASDLKRTIGHAMCIESKTLEDAHQCLVKDPI-------VQSLTGGDTSNIPFFRWRHIRDNTLREDDGRSGMPSLWLAMDRDDTDTSKVRSKLEKDHLEYLIRSERVIAAGPLHLPTELKDDPASQMPVGDLILFNAMDRDEAVAFAENDPLAQAGLYNSMKVHRYNSLDVTGKFITKNFIFDGKTEPTLEMKDAMEYWGYPVDDRQTKWINW 364
BLAST of mRNA_F-serratus_M_contig93.20687.1 vs. uniprot
Match: A0A7S2DFL6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DFL6_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 6.250e-15 Identity = 46/167 (27.54%), Postives = 82/167 (49.10%), Query Frame = 3 Query: 702 VLWDRTILSPSKYKTIGNIMCVRAHSKEAAIRLLESDPFRAADLYETVSLYRYPYSTAGEFNWQLAAHPYVALSMDREGQSRVREDNFPRHLEYLGNTKRCTGVGPIFDPSLDKDDPASAPVGSLVFFNAATDEEARETVENDPLNEAGLFESMFIARFNDLDLSGL 1202 +LW+R++ + G + A S+E L+ DP+ ++ + ++R+ + E ++ + P+V L +D+ G R P HLE+L +K GPIF P+GS V A E A + DP +AG+FES+ I+ ++++D++GL Sbjct: 49 ILWERSLYEDNDMYIHGCVTGYAAASREELDTLMSKDPYITEGVFSDIQVFRWKQNNDPELRFEPKSAPHVFLCLDKPGMLATRTATRPDHLEWLQTSKLVMAAGPIFSAESGAGALEDGPIGSFVCAAADDVESAHAWSKEDPYAQAGIFESVRISHYSEMDVTGL 215
BLAST of mRNA_F-serratus_M_contig93.20687.1 vs. uniprot
Match: A0A7S2P7F9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P7F9_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.820e-13 Identity = 48/138 (34.78%), Postives = 80/138 (57.97%), Query Frame = 3 Query: 906 PYVALSMDR-EGQSR-VREDNFPRHLEYLGNTKRCTGVGPIFDPSLDKDDPASAPVGSLVFFNAATDEEARETVENDPLNEAGLFESMFIARFNDLDLSGL----HLAYPSRHD-PLRDIIAKEGLAVEDDFPKDPDW 1298 P + L+ DR E S +RE+ HLEYL +++ GP+ + +K DP S G+L+ FNA +A E VENDP+ AG++E+M + R+N LD++G +L YP+++ +++ + G V+D+ K +W Sbjct: 24 PTMLLAFDRPEAMSDGLREEVQNEHLEYLIRSEKIIACGPLHVATQEKSDPKSVAAGTLMIFNAKDRNDAIEFVENDPMAVAGVYETMTVHRYNQLDVTGKFVSENLYYPNQNTYQMKEAMEYWGYPVDDEQTKWLNW 161 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig93.20687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig93.20687.1 >prot_F-serratus_M_contig93.20687.1 ID=prot_F-serratus_M_contig93.20687.1|Name=mRNA_F-serratus_M_contig93.20687.1|organism=Fucus serratus male|type=polypeptide|length=529bp MPTKTTFVERALLVVLLGSPAGKSFAPYQQIAPSLCHTRRWTRTRHPLTQback to top mRNA from alignment at F-serratus_M_contig93:538355..545891- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig93.20687.1 ID=mRNA_F-serratus_M_contig93.20687.1|Name=mRNA_F-serratus_M_contig93.20687.1|organism=Fucus serratus male|type=mRNA|length=7537bp|location=Sequence derived from alignment at F-serratus_M_contig93:538355..545891- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig93:538355..545891- >mRNA_F-serratus_M_contig93.20687.1 ID=mRNA_F-serratus_M_contig93.20687.1|Name=mRNA_F-serratus_M_contig93.20687.1|organism=Fucus serratus male|type=CDS|length=3174bp|location=Sequence derived from alignment at F-serratus_M_contig93:538355..545891- (Fucus serratus male)back to top |