mRNA_F-serratus_M_contig920.20612.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig920.20612.1
Unique NamemRNA_F-serratus_M_contig920.20612.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig920.20612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig920contigF-serratus_M_contig920:65912..67077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1166
Cds size1116
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig920.20612.1prot_F-serratus_M_contig920.20612.1Fucus serratus malepolypeptideF-serratus_M_contig920 65936..67051 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932666.8795686-UTR-F-serratus_M_contig920:65911..659351622932666.8795686-UTR-F-serratus_M_contig920:65911..65935Fucus serratus maleUTRF-serratus_M_contig920 65912..65935 +
1690964412.7749035-UTR-F-serratus_M_contig920:65911..659351690964412.7749035-UTR-F-serratus_M_contig920:65911..65935Fucus serratus maleUTRF-serratus_M_contig920 65912..65935 +
1622932666.9054277-UTR-F-serratus_M_contig920:67051..670771622932666.9054277-UTR-F-serratus_M_contig920:67051..67077Fucus serratus maleUTRF-serratus_M_contig920 67052..67077 +
1690964412.8030524-UTR-F-serratus_M_contig920:67051..670771690964412.8030524-UTR-F-serratus_M_contig920:67051..67077Fucus serratus maleUTRF-serratus_M_contig920 67052..67077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932666.8921735-CDS-F-serratus_M_contig920:65935..670511622932666.8921735-CDS-F-serratus_M_contig920:65935..67051Fucus serratus maleCDSF-serratus_M_contig920 65936..67051 +
1690964412.7859154-CDS-F-serratus_M_contig920:65935..670511690964412.7859154-CDS-F-serratus_M_contig920:65935..67051Fucus serratus maleCDSF-serratus_M_contig920 65936..67051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig920.20612.1

>prot_F-serratus_M_contig920.20612.1 ID=prot_F-serratus_M_contig920.20612.1|Name=mRNA_F-serratus_M_contig920.20612.1|organism=Fucus serratus male|type=polypeptide|length=372bp
MEAHFMAREPRQIEPPSAAHQAAAQRMETHLLGRGPQNVGTPSAAHQAAA
RLMGAHVRTREPQHVNAPSAAHQAAAHLMETHLMGTEEDHQMEAQELEFL
DAAGQQGYDRAAAQIAAVRQAAAREAAARQVAARQAAARQVAAQQAAARH
VAAQQAVVRQAAARHKAARQAAIENTGPQRNWGTGQSSVFETSGSSSSDD
ERDSNSRGLRGVQVLDPVTPGGGVHRPKPTVVDSAGVVKANQGRGIPGSP
SPGTPSRMGVNMKGPLSHVSGTPTSSSIRHSGGVVTHVPGTPSKAIRNSG
SVASHVPGTPSRSVGNLAANGGHPGNQTPQRDSRLHGSQRMPPLELLKGM
PGLSEESPQEKWAYSYGHPSS*
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mRNA from alignment at F-serratus_M_contig920:65912..67077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig920.20612.1 ID=mRNA_F-serratus_M_contig920.20612.1|Name=mRNA_F-serratus_M_contig920.20612.1|organism=Fucus serratus male|type=mRNA|length=1166bp|location=Sequence derived from alignment at F-serratus_M_contig920:65912..67077+ (Fucus serratus male)
GCTCACCAAGCGGCCGTCCTTGAAATGGAGGCCCACTTCATGGCGAGGGA
ACCCCGGCAAATAGAGCCCCCATCCGCCGCCCATCAAGCTGCTGCCCAAC
GAATGGAGACCCATCTATTAGGCAGGGGGCCTCAGAACGTGGGGACCCCA
TCTGCCGCTCATCAAGCCGCTGCCCGACTAATGGGAGCCCATGTAAGAAC
GAGAGAGCCCCAGCATGTGAATGCCCCATCCGCGGCCCATCAAGCCGCTG
CCCATCTAATGGAGACCCATCTGATGGGGACGGAGGAGGACCACCAAATG
GAAGCCCAAGAACTGGAGTTTCTTGATGCCGCGGGGCAACAAGGCTATGA
TCGAGCTGCTGCCCAAATAGCTGCCGTTCGACAGGCTGCCGCCCGAGAAG
CCGCTGCTCGACAGGTAGCCGCCCGACAAGCAGCTGCTCGACAGGTCGCC
GCCCAGCAAGCCGCTGCCCGACATGTTGCAGCTCAACAAGCAGTTGTTCG
ACAAGCCGCTGCGCGTCATAAGGCTGCCCGGCAAGCGGCAATTGAAAACA
CCGGTCCTCAGCGCAACTGGGGCACGGGACAAAGCTCCGTCTTCGAAACA
TCGGGGAGCAGCAGCAGTGACGACGAGAGAGATAGCAATTCCCGGGGTCT
CCGGGGCGTGCAGGTGCTCGACCCGGTGACTCCTGGAGGCGGTGTCCACC
GTCCCAAACCCACCGTCGTCGATTCAGCGGGTGTGGTAAAGGCGAATCAA
GGAAGAGGCATCCCCGGGTCGCCATCTCCTGGGACGCCTTCGCGCATGGG
CGTCAACATGAAGGGCCCTTTGAGCCACGTGTCGGGGACTCCTACCAGTT
CGAGCATTCGCCACTCGGGCGGTGTCGTGACCCATGTGCCGGGGACTCCG
AGCAAGGCTATCCGTAACTCGGGTAGCGTCGCGAGTCACGTTCCCGGGAC
TCCGAGCAGGAGCGTCGGGAACTTGGCCGCCAACGGAGGCCACCCGGGGA
ACCAAACCCCGCAGAGGGACTCGCGACTCCACGGCAGCCAACGAATGCCG
CCCCTCGAGTTACTTAAGGGCATGCCCGGCCTCAGCGAGGAGAGTCCTCA
AGAGAAATGGGCCTATTCTTATGGACACCCGTCTTCGTAGTAAATGTAGA
TAGTTTTGCCCGGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig920:65912..67077+

>mRNA_F-serratus_M_contig920.20612.1 ID=mRNA_F-serratus_M_contig920.20612.1|Name=mRNA_F-serratus_M_contig920.20612.1|organism=Fucus serratus male|type=CDS|length=2232bp|location=Sequence derived from alignment at F-serratus_M_contig920:65912..67077+ (Fucus serratus male)
ATGGAGGCCCACTTCATGGCGAGGGAACCCCGGCAAATAGAGCCCCCATC
CGCCGCCCATCAAGCTGCTGCCCAACGAATGGAGACCCATCTATTAGGCA
GGGGGCCTCAGAACGTGGGGACCCCATCTGCCGCTCATCAAGCCGCTGCC
CGACTAATGGGAGCCCATGTAAGAACGAGAGAGCCCCAGCATGTGAATGC
CCCATCCGCGGCCCATCAAGCCGCTGCCCATCTAATGGAGACCCATCTGA
TGGGGACGGAGGAGGACCACCAAATGGAAGCCCAAGAACTGGAGTTTCTT
GATGCCGCGGGGCAACAAGGCTATGATCGAGCTGCTGCCCAAATAGCTGC
CGTTCGACAGGCTGCCGCCCGAGAAGCCGCTGCTCGACAGGTAGCCGCCC
GACAAGCAGCTGCTCGACAGGTCGCCGCCCAGCAAGCCGCTGCCCGACAT
GTTGCAGCTCAACAAGCAGTTGTTCGACAAGCCGCTGCGCGTCATAAGGC
TGCCCGGCAAGCGGCAATTGAAAACACCGGTCCTCAGCGCAACTGGGGCA
CGGGACAAAGCTCCGTCTTCGAAACATCGGGGAGCAGCAGCAGTGACGAC
GAGAGAGATAGCAATTCCCGGGGTCTCCGGGGCGTGCAGGTGCTCGACCC
GGTGACTCCTGGAGGCGGTGTCCACCGTCCCAAACCCACCGTCGTCGATT
CAGCGGGTGTGGTAAAGGCGAATCAAGGAAGAGGCATCCCCGGGTCGCCA
TCTCCTGGGACGCCTTCGCGCATGGGCGTCAACATGAAGGGCCCTTTGAG
CCACGTGTCGGGGACTCCTACCAGTTCGAGCATTCGCCACTCGGGCGGTG
TCGTGACCCATGTGCCGGGGACTCCGAGCAAGGCTATCCGTAACTCGGGT
AGCGTCGCGAGTCACGTTCCCGGGACTCCGAGCAGGAGCGTCGGGAACTT
GGCCGCCAACGGAGGCCACCCGGGGAACCAAACCCCGCAGAGGGACTCGC
GACTCCACGGCAGCCAACGAATGCCGCCCCTCGAGTTACTTAAGGGCATG
CCCGGCCTCAGCGAGGAGAGTCCTCAAGAGAAATGGGCCTATTCTTATGG
ACACCCGTCTTCGTAGATGGAGGCCCACTTCATGGCGAGGGAACCCCGGC
AAATAGAGCCCCCATCCGCCGCCCATCAAGCTGCTGCCCAACGAATGGAG
ACCCATCTATTAGGCAGGGGGCCTCAGAACGTGGGGACCCCATCTGCCGC
TCATCAAGCCGCTGCCCGACTAATGGGAGCCCATGTAAGAACGAGAGAGC
CCCAGCATGTGAATGCCCCATCCGCGGCCCATCAAGCCGCTGCCCATCTA
ATGGAGACCCATCTGATGGGGACGGAGGAGGACCACCAAATGGAAGCCCA
AGAACTGGAGTTTCTTGATGCCGCGGGGCAACAAGGCTATGATCGAGCTG
CTGCCCAAATAGCTGCCGTTCGACAGGCTGCCGCCCGAGAAGCCGCTGCT
CGACAGGTAGCCGCCCGACAAGCAGCTGCTCGACAGGTCGCCGCCCAGCA
AGCCGCTGCCCGACATGTTGCAGCTCAACAAGCAGTTGTTCGACAAGCCG
CTGCGCGTCATAAGGCTGCCCGGCAAGCGGCAATTGAAAACACCGGTCCT
CAGCGCAACTGGGGCACGGGACAAAGCTCCGTCTTCGAAACATCGGGGAG
CAGCAGCAGTGACGACGAGAGAGATAGCAATTCCCGGGGTCTCCGGGGCG
TGCAGGTGCTCGACCCGGTGACTCCTGGAGGCGGTGTCCACCGTCCCAAA
CCCACCGTCGTCGATTCAGCGGGTGTGGTAAAGGCGAATCAAGGAAGAGG
CATCCCCGGGTCGCCATCTCCTGGGACGCCTTCGCGCATGGGCGTCAACA
TGAAGGGCCCTTTGAGCCACGTGTCGGGGACTCCTACCAGTTCGAGCATT
CGCCACTCGGGCGGTGTCGTGACCCATGTGCCGGGGACTCCGAGCAAGGC
TATCCGTAACTCGGGTAGCGTCGCGAGTCACGTTCCCGGGACTCCGAGCA
GGAGCGTCGGGAACTTGGCCGCCAACGGAGGCCACCCGGGGAACCAAACC
CCGCAGAGGGACTCGCGACTCCACGGCAGCCAACGAATGCCGCCCCTCGA
GTTACTTAAGGGCATGCCCGGCCTCAGCGAGGAGAGTCCTCAAGAGAAAT
GGGCCTATTCTTATGGACACCCGTCTTCGTAG
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