mRNA_F-serratus_M_contig920.20611.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig920.20611.1
Unique NamemRNA_F-serratus_M_contig920.20611.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig920.20611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig920contigF-serratus_M_contig920:63226..65860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2331
Cds size2313
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig920.20611.1prot_F-serratus_M_contig920.20611.1Fucus serratus malepolypeptideF-serratus_M_contig920 63244..65860 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932666.8120608-UTR-F-serratus_M_contig920:63225..632431622932666.8120608-UTR-F-serratus_M_contig920:63225..63243Fucus serratus maleUTRF-serratus_M_contig920 63226..63243 +
1690964412.7363224-UTR-F-serratus_M_contig920:63225..632431690964412.7363224-UTR-F-serratus_M_contig920:63225..63243Fucus serratus maleUTRF-serratus_M_contig920 63226..63243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932666.8261225-CDS-F-serratus_M_contig920:63243..632781622932666.8261225-CDS-F-serratus_M_contig920:63243..63278Fucus serratus maleCDSF-serratus_M_contig920 63244..63278 +
1690964412.750033-CDS-F-serratus_M_contig920:63243..632781690964412.750033-CDS-F-serratus_M_contig920:63243..63278Fucus serratus maleCDSF-serratus_M_contig920 63244..63278 +
1622932666.8415961-CDS-F-serratus_M_contig920:63582..658601622932666.8415961-CDS-F-serratus_M_contig920:63582..65860Fucus serratus maleCDSF-serratus_M_contig920 63583..65860 +
1690964412.7638137-CDS-F-serratus_M_contig920:63582..658601690964412.7638137-CDS-F-serratus_M_contig920:63582..65860Fucus serratus maleCDSF-serratus_M_contig920 63583..65860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig920.20611.1

>prot_F-serratus_M_contig920.20611.1 ID=prot_F-serratus_M_contig920.20611.1|Name=mRNA_F-serratus_M_contig920.20611.1|organism=Fucus serratus male|type=polypeptide|length=771bp
MVLGATDARPLSLRRHMVEIPPIHGRAEDPSVGRYVSNPTVSRSRKASMS
KSPTEIGSYVTGDEDTPSLDDASVSPGEGGTFFGAENAPASGVRINGASP
AAASARALRQEISGTPTVASGFASTVVNPGRGGSRSRSRSRSRSPSSRRE
KARRDMQRIEGTGEESRKPSGRKESTSRRRSKSTGNSRSRSRSKSPSSCA
RAPGDGDGGSGNNNGRGGGVAMAGEARQCGKSNRLPNRPPSFRSGFSGLF
SSADGSPSLRMLNSKNSKRERQVVGKPNFCSDTGGSSAGHGSDAPVERPK
KQSRASIEEDPGRVEMTTAAQSKGESKFLNTRDSVERITVSGSPENGTAI
AGGTNSSRGRGGHLTTKSDGGGGVDFSALAKEAYERRMYGGRGGSDGFRR
SWSLGTSPRDSLDGGGTETKEQKWKEENKEDARGPTPEALADAKANAVAQ
FPFGGSDAPQVPARAEPTHLLRPSPVGQDLLLPAQRERDGSHPNEETKSA
LDASSDVPRDVFRAAKQNDPEWRKHDASYPDPDTGLAGQSTSEIRDVVSD
LPVPGSAGSSRQRHAVVSANSSARARAGSQDSDSDLEARRRSGCPSPATV
NAILNSRIGAMSRHDLPYGAAVGGRGFVSAYNKGYESAYKCAYKHHSTGY
VVDEESPYRGGRGGVGFGQSLRGIYSNLAGSSMMESEDDTESDSTLPMRS
STGVATRQSSAHQAAVLQMEAHLMGTDMQEMPTHSPAHQAAILEMEAQEM
ESAPRQMQTYSEAHQAAVLEM
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mRNA from alignment at F-serratus_M_contig920:63226..65860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig920.20611.1 ID=mRNA_F-serratus_M_contig920.20611.1|Name=mRNA_F-serratus_M_contig920.20611.1|organism=Fucus serratus male|type=mRNA|length=2635bp|location=Sequence derived from alignment at F-serratus_M_contig920:63226..65860+ (Fucus serratus male)
GAGATTTCAAGGCAAAAGATGGTGCTCGGCGCGACGGACGCTAGACCTCT
GAGGTAAAAAACACATGAAACAAGTTTTGCTTGCTTGTGCGAAAATCCTG
AGTAGATGTATGAAATCCGGGACTTGGGTGTCCTACCAGTCCCTTGTGAT
GATTTATCGTGACAGCTATGTGTCGTGAGGCCCGAGAGACTTTCCTGTTG
CGAAATTGACACACTCCTGAGGAATTGTGAGTCGTAGTATTTGACCCCCA
CACGCCCCATTTGGTATATGACAAAAAAAAATGCCCTAATGTTCCGTCGA
CCCCGTCATTGCCTTTTGTCGCGAAACCGATCTCCGACCCCTGTCCCCCG
ACTACAGCTTGCGGAGGCACATGGTCGAGATACCCCCGATCCACGGTCGT
GCCGAGGACCCCTCTGTGGGACGCTACGTTTCCAACCCCACCGTAAGTCG
CAGCCGCAAGGCCTCCATGTCGAAAAGCCCGACCGAAATCGGCAGCTACG
TGACAGGGGACGAAGACACTCCTTCGCTGGATGACGCATCGGTGTCGCCA
GGAGAAGGGGGTACGTTCTTTGGCGCTGAGAATGCGCCGGCTTCCGGCGT
CAGGATTAATGGAGCATCTCCGGCGGCTGCATCGGCAAGGGCTCTTCGTC
AGGAAATCTCTGGGACACCGACGGTCGCGAGCGGTTTCGCTTCGACCGTG
GTCAACCCCGGGCGTGGTGGCTCGCGCTCCCGTTCTCGTTCTCGCTCTCG
ATCCCCCAGCTCTCGACGCGAGAAGGCCAGGAGGGACATGCAGAGGATAG
AGGGAACGGGTGAGGAGTCGAGGAAGCCGAGTGGTCGAAAGGAGTCTACC
AGCAGACGAAGGAGTAAGTCTACTGGCAATAGCCGCAGTAGAAGTCGCAG
CAAGAGCCCCTCGTCTTGTGCAAGGGCACCGGGCGATGGAGACGGTGGCA
GCGGCAACAACAACGGCCGGGGAGGCGGTGTTGCAATGGCGGGTGAAGCT
CGACAGTGCGGAAAGTCCAACCGACTCCCGAATCGGCCGCCGTCGTTCAG
GTCTGGCTTTAGTGGGCTTTTTTCGAGCGCCGATGGCTCGCCCTCGCTCC
GGATGCTGAACAGCAAGAACAGCAAGAGGGAGCGTCAGGTCGTTGGGAAA
CCTAATTTTTGCAGTGACACAGGTGGCTCGAGCGCAGGGCACGGAAGCGA
CGCGCCTGTGGAACGGCCCAAAAAGCAATCTCGCGCGAGCATCGAGGAAG
ATCCCGGTCGGGTGGAGATGACGACGGCCGCCCAAAGCAAGGGAGAAAGT
AAGTTCCTCAACACGAGGGACAGCGTCGAAAGAATCACGGTGAGCGGCTC
CCCGGAAAACGGGACCGCAATTGCCGGTGGCACAAATTCGTCTCGGGGAC
GCGGGGGGCACTTGACGACGAAAAGCGATGGTGGCGGTGGCGTGGATTTC
TCGGCGTTAGCTAAGGAGGCGTACGAGCGCCGGATGTACGGTGGTCGAGG
CGGTTCAGATGGCTTCCGTCGCTCGTGGAGCCTTGGCACGTCACCCCGAG
ACAGCCTTGACGGTGGCGGGACGGAGACGAAGGAACAAAAGTGGAAGGAG
GAGAATAAAGAGGATGCGCGCGGACCCACTCCAGAGGCTTTAGCAGATGC
TAAGGCAAATGCCGTGGCGCAATTCCCTTTTGGAGGAAGTGATGCTCCGC
AGGTTCCAGCACGCGCGGAACCCACCCACCTGCTTCGTCCAAGCCCTGTT
GGTCAGGATTTGCTCCTCCCAGCTCAGCGAGAGCGCGACGGTTCCCACCC
GAACGAAGAGACCAAGTCGGCTCTTGATGCATCTTCTGATGTACCTCGCG
ATGTGTTTCGTGCAGCCAAGCAAAACGATCCAGAGTGGAGGAAGCATGAT
GCGTCCTACCCTGACCCTGATACTGGGCTTGCTGGCCAATCCACCAGTGA
AATTAGGGACGTGGTATCGGACCTTCCCGTGCCCGGCAGCGCCGGGAGCA
GTCGGCAGCGGCACGCCGTCGTTAGCGCGAACTCCAGCGCGCGCGCTCGT
GCCGGTTCGCAAGACTCAGACAGCGACCTTGAAGCCAGGCGCCGGTCGGG
CTGCCCGTCACCCGCGACAGTGAACGCTATTCTCAACTCTCGGATTGGCG
CCATGAGTAGGCACGACCTACCTTACGGGGCCGCTGTTGGCGGCAGAGGC
TTCGTGAGCGCGTACAACAAGGGCTACGAGAGCGCTTACAAGTGTGCGTA
CAAGCATCACTCGACGGGCTACGTGGTGGACGAGGAGAGCCCTTATCGAG
GTGGTAGGGGAGGCGTGGGCTTCGGACAATCTCTCAGGGGCATCTACAGC
AATCTGGCGGGCTCGAGCATGATGGAGAGTGAAGACGATACTGAGTCCGA
CTCCACGCTTCCGATGAGATCTTCCACAGGTGTCGCGACTCGACAATCTT
CCGCCCATCAGGCCGCTGTTTTGCAAATGGAGGCCCATCTCATGGGTACG
GACATGCAAGAAATGCCGACACACTCACCCGCCCATCAAGCTGCTATTCT
AGAAATGGAGGCTCAAGAAATGGAGAGCGCGCCCCGGCAAATGCAAACAT
ACTCCGAGGCCCACCAAGCTGCTGTTCTAGAAATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig920:63226..65860+

>mRNA_F-serratus_M_contig920.20611.1 ID=mRNA_F-serratus_M_contig920.20611.1|Name=mRNA_F-serratus_M_contig920.20611.1|organism=Fucus serratus male|type=CDS|length=4626bp|location=Sequence derived from alignment at F-serratus_M_contig920:63226..65860+ (Fucus serratus male)
ATGGTGCTCGGCGCGACGGACGCTAGACCTCTGAGATGGTGCTCGGCGCG
ACGGACGCTAGACCTCTGAGCTTGCGGAGGCACATGGTCGAGATACCCCC
GATCCACGGTCGTGCCGAGGACCCCTCTGTGGGACGCTACGTTTCCAACC
CCACCGTAAGTCGCAGCCGCAAGGCCTCCATGTCGAAAAGCCCGACCGAA
ATCGGCAGCTACGTGACAGGGGACGAAGACACTCCTTCGCTGGATGACGC
ATCGGTGTCGCCAGGAGAAGGGGGTACGTTCTTTGGCGCTGAGAATGCGC
CGGCTTCCGGCGTCAGGATTAATGGAGCATCTCCGGCGGCTGCATCGGCA
AGGGCTCTTCGTCAGGAAATCTCTGGGACACCGACGGTCGCGAGCGGTTT
CGCTTCGACCGTGGTCAACCCCGGGCGTGGTGGCTCGCGCTCCCGTTCTC
GTTCTCGCTCTCGATCCCCCAGCTCTCGACGCGAGAAGGCCAGGAGGGAC
ATGCAGAGGATAGAGGGAACGGGTGAGGAGTCGAGGAAGCCGAGTGGTCG
AAAGGAGTCTACCAGCAGACGAAGGAGTAAGTCTACTGGCAATAGCCGCA
GTAGAAGTCGCAGCAAGAGCCCCTCGTCTTGTGCAAGGGCACCGGGCGAT
GGAGACGGTGGCAGCGGCAACAACAACGGCCGGGGAGGCGGTGTTGCAAT
GGCGGGTGAAGCTCGACAGTGCGGAAAGTCCAACCGACTCCCGAATCGGC
CGCCGTCGTTCAGGTCTGGCTTTAGTGGGCTTTTTTCGAGCGCCGATGGC
TCGCCCTCGCTCCGGATGCTGAACAGCAAGAACAGCAAGAGGGAGCGTCA
GGTCGTTGGGAAACCTAATTTTTGCAGTGACACAGGTGGCTCGAGCGCAG
GGCACGGAAGCGACGCGCCTGTGGAACGGCCCAAAAAGCAATCTCGCGCG
AGCATCGAGGAAGATCCCGGTCGGGTGGAGATGACGACGGCCGCCCAAAG
CAAGGGAGAAAGTAAGTTCCTCAACACGAGGGACAGCGTCGAAAGAATCA
CGGTGAGCGGCTCCCCGGAAAACGGGACCGCAATTGCCGGTGGCACAAAT
TCGTCTCGGGGACGCGGGGGGCACTTGACGACGAAAAGCGATGGTGGCGG
TGGCGTGGATTTCTCGGCGTTAGCTAAGGAGGCGTACGAGCGCCGGATGT
ACGGTGGTCGAGGCGGTTCAGATGGCTTCCGTCGCTCGTGGAGCCTTGGC
ACGTCACCCCGAGACAGCCTTGACGGTGGCGGGACGGAGACGAAGGAACA
AAAGTGGAAGGAGGAGAATAAAGAGGATGCGCGCGGACCCACTCCAGAGG
CTTTAGCAGATGCTAAGGCAAATGCCGTGGCGCAATTCCCTTTTGGAGGA
AGTGATGCTCCGCAGGTTCCAGCACGCGCGGAACCCACCCACCTGCTTCG
TCCAAGCCCTGTTGGTCAGGATTTGCTCCTCCCAGCTCAGCGAGAGCGCG
ACGGTTCCCACCCGAACGAAGAGACCAAGTCGGCTCTTGATGCATCTTCT
GATGTACCTCGCGATGTGTTTCGTGCAGCCAAGCAAAACGATCCAGAGTG
GAGGAAGCATGATGCGTCCTACCCTGACCCTGATACTGGGCTTGCTGGCC
AATCCACCAGTGAAATTAGGGACGTGGTATCGGACCTTCCCGTGCCCGGC
AGCGCCGGGAGCAGTCGGCAGCGGCACGCCGTCGTTAGCGCGAACTCCAG
CGCGCGCGCTCGTGCCGGTTCGCAAGACTCAGACAGCGACCTTGAAGCCA
GGCGCCGGTCGGGCTGCCCGTCACCCGCGACAGTGAACGCTATTCTCAAC
TCTCGGATTGGCGCCATGAGTAGGCACGACCTACCTTACGGGGCCGCTGT
TGGCGGCAGAGGCTTCGTGAGCGCGTACAACAAGGGCTACGAGAGCGCTT
ACAAGTGTGCGTACAAGCATCACTCGACGGGCTACGTGGTGGACGAGGAG
AGCCCTTATCGAGGTGGTAGGGGAGGCGTGGGCTTCGGACAATCTCTCAG
GGGCATCTACAGCAATCTGGCGGGCTCGAGCATGATGGAGAGTGAAGACG
ATACTGAGTCCGACTCCACGCTTCCGATGAGATCTTCCACAGGTGTCGCG
ACTCGACAATCTTCCGCCCATCAGGCCGCTGTTTTGCAAATGGAGGCCCA
TCTCATGGGTACGGACATGCAAGAAATGCCGACACACTCACCCGCCCATC
AAGCTGCTATTCTAGAAATGGAGGCTCAAGAAATGGAGAGCGCGCCCCGG
CAAATGCAAACATACTCCGAGGCCCACCAAGCTGCTGTTCTAGAAATGCT
TGCGGAGGCACATGGTCGAGATACCCCCGATCCACGGTCGTGCCGAGGAC
CCCTCTGTGGGACGCTACGTTTCCAACCCCACCGTAAGTCGCAGCCGCAA
GGCCTCCATGTCGAAAAGCCCGACCGAAATCGGCAGCTACGTGACAGGGG
ACGAAGACACTCCTTCGCTGGATGACGCATCGGTGTCGCCAGGAGAAGGG
GGTACGTTCTTTGGCGCTGAGAATGCGCCGGCTTCCGGCGTCAGGATTAA
TGGAGCATCTCCGGCGGCTGCATCGGCAAGGGCTCTTCGTCAGGAAATCT
CTGGGACACCGACGGTCGCGAGCGGTTTCGCTTCGACCGTGGTCAACCCC
GGGCGTGGTGGCTCGCGCTCCCGTTCTCGTTCTCGCTCTCGATCCCCCAG
CTCTCGACGCGAGAAGGCCAGGAGGGACATGCAGAGGATAGAGGGAACGG
GTGAGGAGTCGAGGAAGCCGAGTGGTCGAAAGGAGTCTACCAGCAGACGA
AGGAGTAAGTCTACTGGCAATAGCCGCAGTAGAAGTCGCAGCAAGAGCCC
CTCGTCTTGTGCAAGGGCACCGGGCGATGGAGACGGTGGCAGCGGCAACA
ACAACGGCCGGGGAGGCGGTGTTGCAATGGCGGGTGAAGCTCGACAGTGC
GGAAAGTCCAACCGACTCCCGAATCGGCCGCCGTCGTTCAGGTCTGGCTT
TAGTGGGCTTTTTTCGAGCGCCGATGGCTCGCCCTCGCTCCGGATGCTGA
ACAGCAAGAACAGCAAGAGGGAGCGTCAGGTCGTTGGGAAACCTAATTTT
TGCAGTGACACAGGTGGCTCGAGCGCAGGGCACGGAAGCGACGCGCCTGT
GGAACGGCCCAAAAAGCAATCTCGCGCGAGCATCGAGGAAGATCCCGGTC
GGGTGGAGATGACGACGGCCGCCCAAAGCAAGGGAGAAAGTAAGTTCCTC
AACACGAGGGACAGCGTCGAAAGAATCACGGTGAGCGGCTCCCCGGAAAA
CGGGACCGCAATTGCCGGTGGCACAAATTCGTCTCGGGGACGCGGGGGGC
ACTTGACGACGAAAAGCGATGGTGGCGGTGGCGTGGATTTCTCGGCGTTA
GCTAAGGAGGCGTACGAGCGCCGGATGTACGGTGGTCGAGGCGGTTCAGA
TGGCTTCCGTCGCTCGTGGAGCCTTGGCACGTCACCCCGAGACAGCCTTG
ACGGTGGCGGGACGGAGACGAAGGAACAAAAGTGGAAGGAGGAGAATAAA
GAGGATGCGCGCGGACCCACTCCAGAGGCTTTAGCAGATGCTAAGGCAAA
TGCCGTGGCGCAATTCCCTTTTGGAGGAAGTGATGCTCCGCAGGTTCCAG
CACGCGCGGAACCCACCCACCTGCTTCGTCCAAGCCCTGTTGGTCAGGAT
TTGCTCCTCCCAGCTCAGCGAGAGCGCGACGGTTCCCACCCGAACGAAGA
GACCAAGTCGGCTCTTGATGCATCTTCTGATGTACCTCGCGATGTGTTTC
GTGCAGCCAAGCAAAACGATCCAGAGTGGAGGAAGCATGATGCGTCCTAC
CCTGACCCTGATACTGGGCTTGCTGGCCAATCCACCAGTGAAATTAGGGA
CGTGGTATCGGACCTTCCCGTGCCCGGCAGCGCCGGGAGCAGTCGGCAGC
GGCACGCCGTCGTTAGCGCGAACTCCAGCGCGCGCGCTCGTGCCGGTTCG
CAAGACTCAGACAGCGACCTTGAAGCCAGGCGCCGGTCGGGCTGCCCGTC
ACCCGCGACAGTGAACGCTATTCTCAACTCTCGGATTGGCGCCATGAGTA
GGCACGACCTACCTTACGGGGCCGCTGTTGGCGGCAGAGGCTTCGTGAGC
GCGTACAACAAGGGCTACGAGAGCGCTTACAAGTGTGCGTACAAGCATCA
CTCGACGGGCTACGTGGTGGACGAGGAGAGCCCTTATCGAGGTGGTAGGG
GAGGCGTGGGCTTCGGACAATCTCTCAGGGGCATCTACAGCAATCTGGCG
GGCTCGAGCATGATGGAGAGTGAAGACGATACTGAGTCCGACTCCACGCT
TCCGATGAGATCTTCCACAGGTGTCGCGACTCGACAATCTTCCGCCCATC
AGGCCGCTGTTTTGCAAATGGAGGCCCATCTCATGGGTACGGACATGCAA
GAAATGCCGACACACTCACCCGCCCATCAAGCTGCTATTCTAGAAATGGA
GGCTCAAGAAATGGAGAGCGCGCCCCGGCAAATGCAAACATACTCCGAGG
CCCACCAAGCTGCTGTTCTAGAAATG
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