mRNA_F-serratus_M_contig918.20574.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig918.20574.1
Unique NamemRNA_F-serratus_M_contig918.20574.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig918.20574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig918contigF-serratus_M_contig918:65934..66643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size323
Cds size267
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig918.20574.1prot_F-serratus_M_contig918.20574.1Fucus serratus malepolypeptideF-serratus_M_contig918 65990..66643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932659.2683787-UTR-F-serratus_M_contig918:65933..659891622932659.2683787-UTR-F-serratus_M_contig918:65933..65989Fucus serratus maleUTRF-serratus_M_contig918 65934..65989 -
1690964408.7693906-UTR-F-serratus_M_contig918:65933..659891690964408.7693906-UTR-F-serratus_M_contig918:65933..65989Fucus serratus maleUTRF-serratus_M_contig918 65934..65989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932659.29224-CDS-F-serratus_M_contig918:65989..661981622932659.29224-CDS-F-serratus_M_contig918:65989..66198Fucus serratus maleCDSF-serratus_M_contig918 65990..66198 -
1690964408.7813787-CDS-F-serratus_M_contig918:65989..661981690964408.7813787-CDS-F-serratus_M_contig918:65989..66198Fucus serratus maleCDSF-serratus_M_contig918 65990..66198 -
1622932659.3122318-CDS-F-serratus_M_contig918:66585..666431622932659.3122318-CDS-F-serratus_M_contig918:66585..66643Fucus serratus maleCDSF-serratus_M_contig918 66586..66643 -
1690964408.7948637-CDS-F-serratus_M_contig918:66585..666431690964408.7948637-CDS-F-serratus_M_contig918:66585..66643Fucus serratus maleCDSF-serratus_M_contig918 66586..66643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig918.20574.1

>prot_F-serratus_M_contig918.20574.1 ID=prot_F-serratus_M_contig918.20574.1|Name=mRNA_F-serratus_M_contig918.20574.1|organism=Fucus serratus male|type=polypeptide|length=89bp
QGTPSSRRAGKRPAAEPRAAANIYESGDRFRSSSSRRTSPMRHGHQPRFW
GRARSAPGTTASGGGVANCDLRVRERAGASCELAREGF*
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mRNA from alignment at F-serratus_M_contig918:65934..66643-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig918.20574.1 ID=mRNA_F-serratus_M_contig918.20574.1|Name=mRNA_F-serratus_M_contig918.20574.1|organism=Fucus serratus male|type=mRNA|length=710bp|location=Sequence derived from alignment at F-serratus_M_contig918:65934..66643- (Fucus serratus male)
CAGGGAACGCCTTCCTCGAGAAGGGCAGGAAAACGACCCGCAGCTGAGCC
ACGCGCTGGTAAGATTGTGCCTTGTTGTCAGGTACCAGGCGAATTGCCTG
ACGGTATGGCTCTGGCTCCCCCCCCCCCCCCAATGAAATCTACCACTACC
TCTCTTAGCAGCAAGGGATCTCATAGCTTGACATTTTTTTCCGACGTGCG
AGTGCCACCCCCTAATATCGCTCCTTGTCCTTGGTGCCTTATGAACAAAA
TATTTTTATGAACGCCCGCAGCGATTTATTTTTTTTCGCCAACAACTGTG
AGCTCCCTTCCGACGCCGCCGGTTCCTTGCATTTGGATGACTTGGATGTT
ATTGGGGAGAGGACAGATTCCTGCTATTCTCTTTTTACCTCTCAGCACCA
ACACTTCTCCCACCTGAAAAACTGCCTGCCCGTGCGCCCGCCCAGCTGCA
AACATCTATGAGAGTGGAGACCGTTTTCGGTCGAGCTCGTCACGACGCAC
GAGCCCCATGCGTCATGGGCACCAACCGCGGTTTTGGGGACGGGCGAGGT
CCGCTCCCGGAACAACAGCATCTGGAGGAGGAGTCGCAAATTGTGACCTA
CGAGTGAGAGAGAGAGCGGGGGCTTCGTGCGAGCTCGCGCGAGAGGGATT
TTGACCATCCCCTCCGGCCCTCCTGGCGGGTCTGTTTTGGCAAGGTAGAA
ACGAGGCAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig918:65934..66643-

>mRNA_F-serratus_M_contig918.20574.1 ID=mRNA_F-serratus_M_contig918.20574.1|Name=mRNA_F-serratus_M_contig918.20574.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig918:65934..66643- (Fucus serratus male)
CAGGGAACGCCTTCCTCGAGAAGGGCAGGAAAACGACCCGCAGCTGAGCC
ACGCGCTGCAGGGAACGCCTTCCTCGAGAAGGGCAGGAAAACGACCCGCA
GCTGAGCCACGCGCTGCTGCAAACATCTATGAGAGTGGAGACCGTTTTCG
GTCGAGCTCGTCACGACGCACGAGCCCCATGCGTCATGGGCACCAACCGC
GGTTTTGGGGACGGGCGAGGTCCGCTCCCGGAACAACAGCATCTGGAGGA
GGAGTCGCAAATTGTGACCTACGAGTGAGAGAGAGAGCGGGGGCTTCGTG
CGAGCTCGCGCGAGAGGGATTTTGACTGCAAACATCTATGAGAGTGGAGA
CCGTTTTCGGTCGAGCTCGTCACGACGCACGAGCCCCATGCGTCATGGGC
ACCAACCGCGGTTTTGGGGACGGGCGAGGTCCGCTCCCGGAACAACAGCA
TCTGGAGGAGGAGTCGCAAATTGTGACCTACGAGTGAGAGAGAGAGCGGG
GGCTTCGTGCGAGCTCGCGCGAGAGGGATTTTGA
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