mRNA_F-serratus_M_contig916.20569.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig916.20569.1
Unique NamemRNA_F-serratus_M_contig916.20569.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig916.20569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig916contigF-serratus_M_contig916:294261..299935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig916.20569.1prot_F-serratus_M_contig916.20569.1Fucus serratus malepolypeptideF-serratus_M_contig916 294261..299888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932658.8240142-CDS-F-serratus_M_contig916:294260..2944521622932658.8240142-CDS-F-serratus_M_contig916:294260..294452Fucus serratus maleCDSF-serratus_M_contig916 294261..294452 -
1690964408.5268552-CDS-F-serratus_M_contig916:294260..2944521690964408.5268552-CDS-F-serratus_M_contig916:294260..294452Fucus serratus maleCDSF-serratus_M_contig916 294261..294452 -
1622932658.8403735-CDS-F-serratus_M_contig916:299858..2998881622932658.8403735-CDS-F-serratus_M_contig916:299858..299888Fucus serratus maleCDSF-serratus_M_contig916 299859..299888 -
1690964408.5396683-CDS-F-serratus_M_contig916:299858..2998881690964408.5396683-CDS-F-serratus_M_contig916:299858..299888Fucus serratus maleCDSF-serratus_M_contig916 299859..299888 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932658.8597124-UTR-F-serratus_M_contig916:299888..2999351622932658.8597124-UTR-F-serratus_M_contig916:299888..299935Fucus serratus maleUTRF-serratus_M_contig916 299889..299935 -
1690964408.5513759-UTR-F-serratus_M_contig916:299888..2999351690964408.5513759-UTR-F-serratus_M_contig916:299888..299935Fucus serratus maleUTRF-serratus_M_contig916 299889..299935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig916.20569.1

>prot_F-serratus_M_contig916.20569.1 ID=prot_F-serratus_M_contig916.20569.1|Name=mRNA_F-serratus_M_contig916.20569.1|organism=Fucus serratus male|type=polypeptide|length=74bp
MKSSRRSHKEGLQHHSLYYLEENTEENWDKEVGDGGSPSLDSIIGILPFD
CYHHTHPSSASSGGSARGLSHVPS
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mRNA from alignment at F-serratus_M_contig916:294261..299935-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig916.20569.1 ID=mRNA_F-serratus_M_contig916.20569.1|Name=mRNA_F-serratus_M_contig916.20569.1|organism=Fucus serratus male|type=mRNA|length=5675bp|location=Sequence derived from alignment at F-serratus_M_contig916:294261..299935- (Fucus serratus male)
GCGGAATCTCCCTATCCAAGTACACGACAGCATTCACCTGGAAGTAGATG
AAGAGCAGTAGGAGATCACACAAGGAGGTAAGAGACAAACGGAGAGAACT
GGGTTCCTCGTTCCAACTTGTCAGGGTTACGACTCACAGATGCTCCTCAT
ACCTGAACTTAGCTATGGCCCCGCGTTTAACCAGCAACACAAAGGAAGAG
CGTCTGTTTGTAAAAAAATGAACAAGTGGGCCTTCAGACCAACTCGTGTG
ACCCCCCGTTCGATGGTGGTTGTCGTCACATTAAAAACCGTTCTGACCTC
TATCAGTACCTTCTCTTACTTCCTCGTCAAGGCAAAGAAGAAATTTTCCT
TGGTCACAGGCTAACCCCAAACTATGGGCCCGTATTAACCAAGGCTCCTC
TCGTGAACGATTTGTCACTTTGGGAACGTTCCGTACGGGAACCGGCGAAG
TACAGGGTTCCTTGTCAGTGCGTGACACCCAAATATTGTGTCACAAGAAG
AAAACAAAACCACAAAGGAGTGAACCTGTAAAGTGTGTTTTCTTCTCTTG
TTCAATTGTTTGGAGATTACAGGCGAAATATCTCTGCGCTCCTTGTCAAA
TTACCGAAAGACGAAAGACGACGAACTATTTCCCGATCTAGTTCTAGAGC
TACGCCTCGAAATACAATCACTACCGAAACGTGAAGACCGACGAAGGCAC
CACACTTATCTGCGAGACGAAGACTACCAGATTACCGGCGACAACGCACA
CACGCATGCTTAAACCACATGATACCGCCCGTACACTATATTATTCGCCA
ACAGCAGTTCCGCAGTTCAAAAACAATACTGGAGTAAAACAACACTTAAA
CACAATATTAGAGTGTCAAGACGACAGCGTCGCCAGCTGCTTCCGCCTCG
ACTTGTGCAACTTTCTCTTGGCACCGAGCTGCCGCTGCTTTGTTGGCCTC
AACGGCGTCGTGAAGGGCCTTGACCTCTGGGATGTACAGCCTGTTGAGTC
GGAGGAACATCAGTCGCTCCACCTTGCCGGGTAGCATAGAGCTGCGCAGG
CTGCCAATCAGGAACGCAAGGGCTGAAAAGTTCCTCTCTGCCTGGCAGCT
AGTAGACTCGATCCCGTGGAACAACCGAGCGATGAGCGCCAAATGCGGCA
AGCCTGGCTCGACTTCGCCCGTTTCGGCGCATGTTCTGGGCTTGCTCCTC
CGCTGCCAGAACTCAAGAAGCGAGAAGTCGTACTCCTCCTCGGCGGGGTC
TTCCGCCAAGTACATCCGCAGCTCCCGCTCAATGATCGCGCCCCGCCTCG
CTGTAGAAACTGCCGCCGGTGCAGCTCTACCGGCGCTAGCTGCCTTCGAC
TTGGCGAGACGTTCGAGTCGCCTTTCCTCCAGGTCCGAGAGGACCTTCTG
CTTCTTGGGCGCAGGCTGGTTGACTCGCCGCCGCCCGCTCCACCACTCCC
AGCGGATGAGGACGCCGACCCGAGATCGGCCTCCGCGAACGTCTTGGCCA
CGCTCTTAACGTCAGCAATCGCAGAGGCCTTCAGATCTGCGCTGCCGTTG
ACGAGATGCTCGTCCGAGCAATCCTTCCGTCTCGGGTCTAGCAGCGCGCA
GATGCGCTCCAAGGGCATTCTTGCCGCCCCGAGCTCTTTCTTCTCCATCC
TTGAGAGCACAACCTCCCGTACCTTACACGTCTCGGTCATCAGGTCGTCC
ACCTGGATTTTTCCTTCAACACGCTGTCGTCGTTGTAGGGTTGGTCTGGT
ACGCGGATCTTGTACACGTCTCCGCTGAAGATCTCCCTGATCTCGCGCAT
GTTGAACATCGTCTGGCTGATGTGGGTGTCGGTGGCGCCTTGGATCTTGA
CGGTTACCTCCGCCACGACGTCCAGCAGGCTGCAAACCTCGTTCGTGACC
GTCCACTCACGCGAGGACAACTTCCGGTTGTTGTTCTCGTTGTCCCTGAA
GTACTCCACGATTGCCTTCTTCAGCTTGAGTAGCCGAACCATCATAGCGT
GTTGACTGGCCCACCTGGTGGTTGTCAGTGGATAAGAGAAAGATCATGGG
AATTGAAGAGAGAGGTGGTAGGGGTTAGGCGCTGGGTACAATTGTTGGTA
CACAATCAATACACAACACACTTTCCGATTATATTATGACACACAACCCG
AACAATAACAGAACCTGCTTCACGTGGTAATGATGTATTTATGTATTTAT
TTATTTCTGATTTTAAGGTTTAAATACGCACGTGCAGGGTATTCAACGAC
GGCGCTGCTAATTGATCTGCACAACAAGAAACAAAACACGAAACGATGCA
ATATCGTAATATGTAATATCAAACACAGATTATGTGGGTACGGAGTATTA
ATATACGCACCTCGTGTCGTTGCGCCTGATTAGTTCGTAGATGATCTGGA
ACTCTTCTTGCAGTCTCTGGATGTCCTTGAGCTCGTCGTTGTTGACCGCG
GAGTGGCTGAACACCCCTACTACCGCCGCCAGCCTCTTCATCAGCTTTTC
CATGGCTGGGTTCTCGCCCGTTCTGATGGAACCATTTATCCCCAAGGCCC
ACATCGTGACGGAGTTGAGCCGGTGGGCGTTGCACTTGAGAACTTCAACA
TCCAAGTTTCGGCAAGCATTTACCACGTTGCCGCCCTGGTCTACAGTAAA
AGCAAGGAAGACGTCCTTCGGCTGCACGTTTTCTCCCATCATGTCCGCGA
AAAAACTTCGTCGTCAGCTGCATGAACACAAGGCGGATCCAAACAAAGAA
ACACAAGGCCGATCCAAACAAAGTCAGTTGGTTTCAAAATATAAAATGTA
GAATGCAAAATACAAAATACAAAAGAATAACTGTTAAAATACCAAATACC
AAATACAAATCCGCATTGCAAAATTGAACATTGGGAACTCCCTTTCAAAA
CACAAGAACTGGTGTACCACAACCACACACACACGAGCAACGCGAGGCGT
TTCAACGCGACAAGAAAAACCCAAAAACCTGGGTAACAGTCTTGGGTGGG
CATATGCAACTAGTTCTATATTGCATTTGACATTGATACCGAATTCCGTA
CTAAACGTCAAACCAACTTGAAGGTTGTAAAGCTCGCCTTTTCGATCCAT
GGCTCGATGTCGGCAGCGGTATGAGAGCCAGGAAAAGCTCGTGTTGCCAA
CCCGACGCGCGTGATCGTTGTTGCGGCTTCAGCGATGTAGGACACGGAGA
ACGTGATGTACTCCTCGTTGGCGACGGTCGTGAGGTCCAGCTGGGCACCG
AGGAAAGGGCCGACGTAACCAAGCTTCACACACGACTCCCGGTGCAAACG
CAAGCCCGTCTTGACTGCGTCGCATGTCTCGGTGTAGATGGTGGACAGGA
TGGAGTTGAAGGTCGCGTCGGACATCGTCGATTCTACGTACTTGGGGCAT
AGCATGCCCATGTGGAGCTTGTAGCCATCGTCGTAGCGCATGTTCTGCGG
CCTCATGTTGATGGCGCACCACACGACGAACCGGCGATTGGCCGCCGCTT
CCGTCGACGCAAGCAGCGGGTTGCCGGTTTGCATGTAGTCCTTGATGGAT
GGTGTCGACGACCCGGCCTTGCCCTTGCCCTTGCCCGTCGCCTTTCCCGT
GGGCTTGGGATCGAACGCTATATTTGAAAACAGCCAACACAAAAAATGTG
CAGCGAACACACAGGCAAATAAAAAGAAATCCGGGAGAGATCAGGTTTGG
ACTATGTGTAGTGTTGTCTTGGAGATGAACAATACTCGCAAATGAAATGA
ACAAGATTTCAATAATACATGATATGCGATACATATTACCTACATAACAA
CTCTGTACTAAACTGCGCAATGAGAACATAAATCCTACACAAGACAATAA
GACAACTACAAACTACAAACATAGCTGCAAATTTATAAATTAATTACATG
TACTTGGGACCCAAGTGGAGGGCGTCTCAGTTGACACCTTCTTCTCTAGA
AGAATCATACAAAAATAAAAAAATAAATATATATTAAAAAAAAAAAAACT
TGAAAACCAAAACGAACAACAAACCACACAGAGAGGAAGGAGCACAGAGA
GAGAGAGTGATTTTTTGTTCTCGCACACTCTGTTTTTTTTGTTTTTTTTT
CTAACACCAGATTGTACCCGCAGCAATGAGAGACAATACACATATTTGCG
CAACCACCCACTCACCGACGGCCGCGGCGACGTTGGCTCTCCCTTGAGCG
GTGGTGGTGTGGTCGTCCATCAGCGCCTTGTACAGGGCGGGGTGTTTCTT
TTGTAGTGGCTGCTCATGCCGCCCGTGCCATCAGCTGGTTTCCAAAGCAT
GAGATGCTTGCATGCCATGCAGAACACGTTTTTTCCGTTGATGAGAGGCT
TGAACTCGCGACACACCTGCCAGACCCACGACCTCTTGGTCTTCTTCCCA
CTTGTCTGTGGGACAATCGTGACAACCACTTGCGTCCCGTTGTTCGAGTG
GAGCGTGCTGGTCTCTGCTGCACCGTCAAGCTGCGGAACCACACGTCCAT
CGTCAGCCACAGGTGCTGCTGAACCACCACCGATCGAAGAATCGGCGTCA
GGAGCATCCACCTCAGCATCAACATGTTGGACCTCGCTCACCTCGCTCAT
CACCCTCGTGTGTGTCTATAGCAGTTCACACTCTTGGTGTTGTGTTTGTG
CTTCGCCCTCCGCGGGCGGGTGTGTTAACAAAAGGGTTCTCTTTTTCGTT
GAAAAGGTTCTCTTTTTCGAAAAGGTTCTCTTTTCGTTTGACAGAATAAT
AAAAAAGGGGGAAAAAAAAAGAAGGGAGAGACAGAGAATCGAACCCCGAC
CTGCCACCCGCCTGAGGATTATATGCAACCCTCTAAGCTACCTTGCTCCA
CGGTATTGAAGTACATATATACATGACGGGAATTGGTTTAACATTCCCGT
ACGGTATTGGGAATTGAATTTGTGCACGGTATTTGTATGGGTGGGAACCA
AAAGCCACGGGAATTCGACTTTTTCCACGGTATTTGGTTGGGTGGGAACA
ACGGGATATGATCTCCGTGGTAACGGTTTGGATGGGAATGGGAAGCGGTC
ATTTGCTTGGTAACGGTTTGGATGGGAATGGGAATTGCGATTTATCACGG
AACGCTCCCATTTCCCATTCCCGTGGAAATACCGCGGTATTTTTCCCGCG
GGAATATTCCCGAGAGGAGCCTTGGTATTAACGATGTTCAGAAAATCAAA
ATTACAATAAATGAAAATCGAAATTGGGCTCTGATTGGTCGAGGTACTAA
AACATCCCGACTACGCTATTTGACTTTTTGGAAAATAAATGTTCTCAAAC
CAAAGAAGCCCCCAGGGACAGAGGTACATAAAAAAAAATAAAAACAGAGA
AAGTTCCAACGCTTGCGAAAACATTTAGTACAGGAAAGTTATTAAAAACA
AGAAGCAGGTTTTTCTTCTGATTGTTCGTTGACTGGAATATACACGATCC
GCTTCATCTTGGGTGGCACCGTGCGCATGGCAGGGTTTGCAGCATCACTC
ACTGTACTATCTAGAAGAGAATACTGAAGAAAACTGGGATAAGGAGGTGG
GAGATGGCGGTAGTCCCAGCCTGGATAGCATCATTGGTATTCTTCCGTTC
GATTGCTATCATCACACACACCCTTCTTCTGCGAGCAGCGGCGGGAGTGC
CAGAGGCCTCAGTCACGTCCCCAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig916:294261..299935-

>mRNA_F-serratus_M_contig916.20569.1 ID=mRNA_F-serratus_M_contig916.20569.1|Name=mRNA_F-serratus_M_contig916.20569.1|organism=Fucus serratus male|type=CDS|length=444bp|location=Sequence derived from alignment at F-serratus_M_contig916:294261..299935- (Fucus serratus male)
ATGAAGAGCAGTAGGAGATCACACAAGGAGATGAAGAGCAGTAGGAGATC
ACACAAGGAGGGTTTGCAGCATCACTCACTGTACTATCTAGAAGAGAATA
CTGAAGAAAACTGGGATAAGGAGGTGGGAGATGGCGGTAGTCCCAGCCTG
GATAGCATCATTGGTATTCTTCCGTTCGATTGCTATCATCACACACACCC
TTCTTCTGCGAGCAGCGGCGGGAGTGCCAGAGGCCTCAGTCACGTCCCCA
GCGGTTTGCAGCATCACTCACTGTACTATCTAGAAGAGAATACTGAAGAA
AACTGGGATAAGGAGGTGGGAGATGGCGGTAGTCCCAGCCTGGATAGCAT
CATTGGTATTCTTCCGTTCGATTGCTATCATCACACACACCCTTCTTCTG
CGAGCAGCGGCGGGAGTGCCAGAGGCCTCAGTCACGTCCCCAGC
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