mRNA_F-serratus_M_contig915.20563.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig915.20563.1 vs. uniprot
Match: A0A6H5JY66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY66_9PHAE) HSP 1 Score: 611 bits (1575), Expect = 7.970e-197 Identity = 370/729 (50.75%), Postives = 440/729 (60.36%), Query Frame = 1
Query: 40 GVFEEEGERNDTPLYVSTDRTYEMFFTEREEEGDGNGGTRRRSRLLSGQALIEEEWKGD-------GETGEGSRRGLGECVGGFWSLAPAATEYPRLVVGDCAEHPADIKVTTWSEKTCATCDETVYTGAQPEISCFEGDDGSTTGVTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGCMVLEVGGRWAGLYTMVGSYNDHGDYYSESLAHNIFFEYETASTEDXXXXXXXXXXXXRS-------------LTGLFRAQEHAEELKEEVSEGKERRLASCDTGYWIKTPTGGGYPFFAVADCASNPEGISSSSVWQIVDCNGCTASPVDSNQPVACATGVDAIVTTPSPVGPIDTVGSHGDTLPGAGPSTCEAVTVTGPREGSYTVAVEERNNRADLFSDDGEWELFYSGAAPALQRMRRRL--DDGEGGQGSPLSRGSSRDLQTT--------CAGYWYITPTETRYPAYAVSDCAYHPVDIVETDWLYIDCEDCEVETANPKPEAACTGAPENAKRGGSFVTPAPTPNDPNRTPAP--MSSLICETTCPNLVVTGDYSGNYSANGTYRGKMDFFSEDGQFNLYFELP-ADRRLLWETGMETETSLEVFPGDVMASALRG---VVGASRNLALCSTGYWIIAAIGGDGYPVLGVPDCAQHPADIRGNPWLITSCATCGVEEAPSFVAPTVSCATGSEG 2118
GV+ EEG RN LY+S DR+ E+FF+ER L+ ++ D GE G ++R LG C GFWSLAPA + YPRL VGDCA HPADIKVT WSE TC C+E + GA P ++C + +T ++ XXXXXXXXXXXXXXXXXX D C V++V GR+ GLYT+ GSYN+ GD+YS HNIF XXXXXXXXXXXX L GLF + + R LA+C GYWIK PTGGGYP FAVADCA+ PE I+SSS W IV C GC + S+Q + CATG DA V TPSPV P+ G TLPGAGPSTCEAVTVTGPR G YTV N AD++SDDG W +F++ APAL R RR +GG PLS + D + T C GYWYITP + RYPAYAV DC HPVDIV +DWLY+DCEDCEV TA+ KP+A+CTGAP N KRGGSF TPAP D TP P SS TTC L VTG++ GNY+ANGTYRGK+DFF++DG NLYFEL + RRLL G E E + PG++MASAL + ASR LA+C++GYWII + GDGYPVLGVPDCA HP DIR N WL+ SC +CGV+EAPSFVAPT++CA+G+ G
Sbjct: 28 GVYFEEGTRNGGSLYISEDRSAELFFSERXXXXXXXXXXXXXXXXXXXXXLLPQDMLDDSEKAVSVGEGGSAAKRRLGACTSGFWSLAPAGSGYPRLTVGDCASHPADIKVTAWSEVTCEGCEEQAFNGAVPAVACTSDNSLATPSPSAASTXXXXXXXXXXXXXXXXXXGGEVGAQQTPSPVASAPEIVVD--------------DSCKVIDVVGRYPGLYTVAGSYNERGDFYSADGGHNIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLRGLFGERS--------AQQATGRNLAACSNGYWIKMPTGGGYPLFAVADCAAYPEEIASSSTWMIVTCEGCVGTEATSSQTITCATGADAFVATPSPVSPVVAGGGETITLPGAGPSTCEAVTVTGPRAGGYTVG-GSINGAADVYSDDGLWRMFFASPAPALSRRARRSLHFSADGGDAGPLSAELAPDTRDTHDRRGLQTCDGYWYITPVDDRYPAYAVMDCGEHPVDIVSSDWLYLDCEDCEVVTADSKPDASCTGAPANIKRGGSFNTPAPVVLDFVGTPGPDTSSSGSASTTCTELYVTGEFPGNYTANGTYRGKLDFFNDDGTVNLYFELADSSRRLLSSAGEEREGGRRLLPGELMASALEERYHALAASRRLAICTSGYWIITQVAGDGYPVLGVPDCADHPVDIRANTWLVASCESCGVQEAPSFVAPTIACASGAAG 733
BLAST of mRNA_F-serratus_M_contig915.20563.1 vs. uniprot
Match: D7G5Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q9_ECTSI) HSP 1 Score: 598 bits (1541), Expect = 3.170e-195 Identity = 361/663 (54.45%), Postives = 417/663 (62.90%), Query Frame = 1
Query: 217 GETGEGSRRGLGECVGGFWSLAPAATEYPRLVVGDCAEHPADIKVTTWSEKTCATCDETVYTGAQPEISCFEGDDGSTTGVTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGCMVLEVGGRWAGLYTMVGSYNDHGDYYSESLAHNIFFEYETASTEDXXXXXXXXXXXX-------------RSLTGLFRAQEHAEELKEEVSEGKERRLASCDTGYWIKTPTGGGYPFFAVADCASNPEGISSSSVWQIVDCNGCTASPVDSNQPVACATGVDAIVTTPSPVGPIDTVGSHGDTLPGAGPSTCEAVTVTGPREGSYTVAVEERNNRADLFSDDGEWELFYSGAAPALQRMRRR--LDDGEGGQGSPLSRGSSRDLQTT--------CAGYWYITPTETRYPAYAVSDCAYHPVDIVETDWLYIDCEDCEVETANPKPEAACTGAPENAKRGGSFVTPAPTPNDPNRTPAPMSSLI--CETTCPNLVVTGDYSGNYSANGTYRGKMDFFSEDGQFNLYFELP-ADRRLLWETGMETETSLEVFPGDVMASALRG---VVGASRNLALCSTGYWIIAAIGGDGYPVLGVPDCAQHPADIRGNPWLITSCATCGVEEAPSFVAPTVSCATGSEG 2118
GE G +RR LG C GFWSLAPA + YPRL VGDCA HPADIKVT W E TC C+E + GA P ++C D +T ++ XXXXXXXXXXXXXXXXXXXX D C V++VGGR+ GLYT+ GSYN+ GD+YS HNIFFE +A XXXXX XXXXXX R L GLF E + + G R LA+C GYWIK PTGGGYPFFAVADCA+ PE I+SSS W IV C GC + S Q + CATG DA V TPSPV P+ G TLPGAGPSTCEA+TVTGPR G YTV N AD +SDDG W +F++ A AL R RR EGG PLS + D + T C GYWYITP + RYPAYAV DC HPVDIV +DWLY+DCEDCEV TA+ KP+A+CTGAP N KRGGSF TPAP D TP P SS TTC L VTGD+ GNY+ANGTYRG++DFFS+DG FNLYFEL + RRLL E E + PG+VMASAL ASR LA+C++GYWII + GDGYPVLG PDCA HP DIR N WL+ SC +CGV+EAPSFVAPT++CA+G+ G
Sbjct: 27 GEGGSAARRRLGACTSGFWSLAPAGSGYPRLTVGDCASHPADIKVTAWLEVTCEGCEEQAFNGAVPAVACASDDSPATPSPSAXXXXXXXXXXXXXXXXXXXXXGGEVGAQQTPSPVASAPEIIVD--------------DSCKVVDVGGRYPGLYTVAGSYNERGDFYSADGGHNIFFEASSAXXXXXXXXXFXXXXXXXXXXXXXXGDRRRRVLRGLFG------ERSGQQATG--RNLAACSNGYWIKMPTGGGYPFFAVADCAAYPEEIASSSAWMIVTCEGCVGTEATSAQAITCATGTDAFVATPSPVSPVVAGGEETVTLPGAGPSTCEAITVTGPRAGGYTVE-GSINGAADAYSDDGLWRMFFAPPASALSRRARRSLYFSAEGGDAVPLSTELAPDTRDTHDRRGLQTCDGYWYITPVDDRYPAYAVMDCGEHPVDIVSSDWLYLDCEDCEVVTADSKPDASCTGAPANLKRGGSFNTPAPVALDFVGTPGPGSSSSGSSSTTCTELYVTGDFPGNYTANGTYRGRLDFFSDDGTFNLYFELADSSRRLLSSADEEREGERRLLPGEVMASALEERYHAWAASRRLAICTSGYWIITQVAGDGYPVLGAPDCADHPVDIRTNTWLVASCESCGVQEAPSFVAPTITCASGAAG 666 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig915.20563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig915.20563.1 >prot_F-serratus_M_contig915.20563.1 ID=prot_F-serratus_M_contig915.20563.1|Name=mRNA_F-serratus_M_contig915.20563.1|organism=Fucus serratus male|type=polypeptide|length=709bp MFFTEREEEGDGNGGTRRRSRLLSGQALIEEEWKGDGETGEGSRRGLGECback to top mRNA from alignment at F-serratus_M_contig915:252142..272780+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig915.20563.1 ID=mRNA_F-serratus_M_contig915.20563.1|Name=mRNA_F-serratus_M_contig915.20563.1|organism=Fucus serratus male|type=mRNA|length=20639bp|location=Sequence derived from alignment at F-serratus_M_contig915:252142..272780+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig915:252142..272780+ >mRNA_F-serratus_M_contig915.20563.1 ID=mRNA_F-serratus_M_contig915.20563.1|Name=mRNA_F-serratus_M_contig915.20563.1|organism=Fucus serratus male|type=CDS|length=4254bp|location=Sequence derived from alignment at F-serratus_M_contig915:252142..272780+ (Fucus serratus male)back to top |