mRNA_F-serratus_M_contig915.20556.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig915.20556.1
Unique NamemRNA_F-serratus_M_contig915.20556.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig915.20556.1 vs. uniprot
Match: D7G5Q7_ECTSI (Tha4/Hcf106 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5Q7_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.220e-49
Identity = 107/173 (61.85%), Postives = 126/173 (72.83%), Query Frame = 1 
Query:    1 MRVSVCACAAAMAVAARFAEAFVPALGGRAGLVRVGSLRTETSPSPVSASRPNNAFSRTYFGASGLSTSSRVAVGRPSS-STRTTMGLFGLGAPEIAVCLAVAAFILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIIEGEANAAKTTM-IETE--AVVDAQPATKKEEEQTA 507
            M+++ C    A A+AAR AEAFVPAL GRAG++       + S SP +A R  NAFS T +G+   + SSR   GRPSS ++ TTMGLFGLGAPEIAVC+AVAA ILGPDK+AG AKD GKMAGELKDVPKEFQAG+ EGEA   KT   IE+   AV DA+PATKKEEE+ A
Sbjct:    1 MKLACCVLVWACALAARVAEAFVPALAGRAGIMSAAG--RQASMSPAAAGR-QNAFSHTSYGSPAQAQSSRWLSGRPSSGASTTTMGLFGLGAPEIAVCIAVAALILGPDKMAGFAKDMGKMAGELKDVPKEFQAGVEEGEAKTQKTIREIESNGLAVEDAEPATKKEEEEKA 170
[Close]
BLAST of mRNA_F-serratus_M_contig915.20556.1 vs. uniprot
Match: A0A1E7F4Y7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4Y7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.450e-22
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:  250 TMGLFGLGAPEIAVCLAVAAFILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIIEGEANAAKTTMIETEAVV 465
            TMGLFGLGAPE+ + L  AAF+LGPDKLA   KD GK+AGELK+VPKEFQAG+ EGEANA K  + E   VV
Sbjct:   62 TMGLFGLGAPEVGIILVAAAFLLGPDKLAEFGKDAGKIAGELKEVPKEFQAGMAEGEANAKKMKIAEEAEVV 133
[Close]
BLAST of mRNA_F-serratus_M_contig915.20556.1 vs. uniprot
Match: A0A7S4A8R7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A8R7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.740e-21
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:  250 TMGLFGLGAPEIAVCLAVAAFILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIIEGEANA-AKTTMIETEAVVDAQPATK 486
            TMGLFGLGAPE+ + L  AAF+LGPDKLA + KD GK+AGELK+VPKEFQAG+ EGEA+A A     E EA V  +  TK
Sbjct:   63 TMGLFGLGAPEVGIILVAAAFLLGPDKLASLGKDAGKIAGELKEVPKEFQAGLAEGEASAKAMKDKQEAEAAVIVEKETK 142
[Close]
BLAST of mRNA_F-serratus_M_contig915.20556.1 vs. uniprot
Match: A0A448ZFG6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFG6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.050e-21
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:  250 TMGLFGLGAPEIAVCLAVAAFILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIIEGEANA 429
            TMGLFGLGAPEI + L  AAF+LGPDKLA + KD GK+AGELK+VPKEFQAG+ EGEA+A
Sbjct:   60 TMGLFGLGAPEIGIVLVAAAFLLGPDKLASLGKDAGKIAGELKEVPKEFQAGMAEGEASA 119
[Close]
BLAST of mRNA_F-serratus_M_contig915.20556.1 vs. uniprot
Match: A0A7S2K8J1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8J1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.060e-20
Identity = 56/88 (63.64%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:  205 SSRVAVGRP---SSSTRTTM--GLFGLGAPEIAVCLAVAAFILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIIEGEANA----AKTT 441
            S+ V VG P   ++S R T   GLFGLG PEIA+ L  AAF+LGP+KLA + KD GKMAGELK+VPKEFQAGI EGE NA    AKTT
Sbjct:   69 SNSVVVGAPRTCAASQRQTQLHGLFGLGGPEIAIILVAAAFLLGPEKLAELGKDAGKMAGELKEVPKEFQAGIEEGEKNAKAMKAKTT 156
[Close]
BLAST of mRNA_F-serratus_M_contig915.20556.1 vs. uniprot
Match: A0A835YSI8_9STRA (Tha4/Hcf106 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.230e-20
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:  196 LSTSSRVAVGRPSSSTRTTMGLFGLGAPEIAVCLAVAAFILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIIEGEAN 426
            L+ SS   +    S    +MGLFGLGAPEIAV + VAA +LGP+KL   AKD GKMAGELK+VPKEFQAGI EGEA+
Sbjct:   49 LAPSSHARLTTRPSRASVSMGLFGLGAPEIAVIIVVAALVLGPEKLTSFAKDAGKMAGELKEVPKEFQAGIDEGEAS 125
[Close]
BLAST of mRNA_F-serratus_M_contig915.20556.1 vs. uniprot
Match: A0A7S2SMJ0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMJ0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.170e-20
Identity = 46/72 (63.89%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:  214 VAVGRPSSSTRTTMGLFGLGAPEIAVCLAVAAFILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIIEGEANA 429
               G P+ S   TMGLFGLGAPEIAV + VA F+LGP KLA +A+D GK+AGELKDVP+EFQ G+ EGE  A
Sbjct:   86 AVAGAPARSQVVTMGLFGLGAPEIAVIVGVAGFVLGPQKLAEMARDMGKVAGELKDVPREFQEGLSEGEKEA 157
[Close]
BLAST of mRNA_F-serratus_M_contig915.20556.1 vs. uniprot
Match: A0A7S2XUZ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUZ2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.870e-19
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:  253 MGLFGLGAPEIAVCLAVAAFILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIIEG-EANAAKTTMIETEAVVD 468
            MGLFGLGAPEIAVC+ VAA +LGPDKL   A+D GKMAGELK+VPKEFQ G+ EG EA   +   I+ EA  +
Sbjct:   67 MGLFGLGAPEIAVCVIVAALVLGPDKLISSARDVGKMAGELKEVPKEFQKGLEEGKEAARLEMAQIKEEATAE 139
[Close]
BLAST of mRNA_F-serratus_M_contig915.20556.1 vs. uniprot
Match: A0A8J2SN64_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SN64_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.140e-19
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:  250 TMGLFGLGAPEIAVCLAVAAFILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIIEGEANAA 432
            T  LFGLGAPE+ V L + AF+LGPDKLA +AKDFGK+AGELKDVPKEF+ G+ EGEA  A
Sbjct:   71 TNSLFGLGAPELVVILGLGAFVLGPDKLASMAKDFGKVAGELKDVPKEFKEGLEEGEAAKA 131
[Close]
BLAST of mRNA_F-serratus_M_contig915.20556.1 vs. uniprot
Match: A0A6V1V9D4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V9D4_HETAK)

HSP 1 Score: 87.0 bits (214), Expect = 1.200e-18
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:  253 MGLFGLGAPEIAVCLAVAAFILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIIEGEANA 429
            M LFGL APE+ VCLAVAA ILGPDKL G AKD GK+AGELK+VPKEFQAG+ EG+  A
Sbjct:   71 MQLFGLSAPELLVCLAVAALILGPDKLIGSAKDLGKIAGELKEVPKEFQAGMEEGKEKA 129
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig915.20556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Q7_ECTSI1.220e-4961.85Tha4/Hcf106 protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A1E7F4Y7_9STRA2.450e-2268.06Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S4A8R7_9STRA2.740e-2163.75Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448ZFG6_9STRA5.050e-2175.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2K8J1_9STRA2.060e-2063.64Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A835YSI8_9STRA3.230e-2063.64Tha4/Hcf106 protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2SMJ0_9STRA4.170e-2063.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XUZ2_9STRA3.870e-1964.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2SN64_9STRA7.140e-1970.49Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6V1V9D4_HETAK1.200e-1874.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig915contigF-serratus_M_contig915:123323..124963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue2.2e-13
Seed eggNOG ortholog159749.K0RSR5
KEGG koko:K03116
KEGG TC2.A.64
KEGG Pathwayko03060,ko03070,map03060,map03070
KEGG ModuleM00336
Hectar predicted targeting categorychloroplast
EggNOG free text desc.mttA/Hcf106 family
EggNOG OGs29P47@1,2RWFK@2759,2XDQB@2836
Ec32 ortholog descriptionTha4/Hcf106 protein
Ec32 orthologEc-12_008760.1
COG Functional cat.U
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Exons4
Model size510
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig915.20556.1prot_F-serratus_M_contig915.20556.1Fucus serratus malepolypeptideF-serratus_M_contig915 123323..124963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932656.9673388-CDS-F-serratus_M_contig915:123322..1234331622932656.9673388-CDS-F-serratus_M_contig915:123322..123433Fucus serratus maleCDSF-serratus_M_contig915 123323..123433 -
1690964407.3482184-CDS-F-serratus_M_contig915:123322..1234331690964407.3482184-CDS-F-serratus_M_contig915:123322..123433Fucus serratus maleCDSF-serratus_M_contig915 123323..123433 -
1622932656.9835925-CDS-F-serratus_M_contig915:123701..1237631622932656.9835925-CDS-F-serratus_M_contig915:123701..123763Fucus serratus maleCDSF-serratus_M_contig915 123702..123763 -
1690964407.3601081-CDS-F-serratus_M_contig915:123701..1237631690964407.3601081-CDS-F-serratus_M_contig915:123701..123763Fucus serratus maleCDSF-serratus_M_contig915 123702..123763 -
1622932657.0045395-CDS-F-serratus_M_contig915:124094..1242791622932657.0045395-CDS-F-serratus_M_contig915:124094..124279Fucus serratus maleCDSF-serratus_M_contig915 124095..124279 -
1690964407.3760343-CDS-F-serratus_M_contig915:124094..1242791690964407.3760343-CDS-F-serratus_M_contig915:124094..124279Fucus serratus maleCDSF-serratus_M_contig915 124095..124279 -
1622932657.01995-CDS-F-serratus_M_contig915:124811..1249631622932657.01995-CDS-F-serratus_M_contig915:124811..124963Fucus serratus maleCDSF-serratus_M_contig915 124812..124963 -
1690964407.3923254-CDS-F-serratus_M_contig915:124811..1249631690964407.3923254-CDS-F-serratus_M_contig915:124811..124963Fucus serratus maleCDSF-serratus_M_contig915 124812..124963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig915.20556.1

>prot_F-serratus_M_contig915.20556.1 ID=prot_F-serratus_M_contig915.20556.1|Name=mRNA_F-serratus_M_contig915.20556.1|organism=Fucus serratus male|type=polypeptide|length=170bp
MRVSVCACAAAMAVAARFAEAFVPALGGRAGLVRVGSLRTETSPSPVSAS
RPNNAFSRTYFGASGLSTSSRVAVGRPSSSTRTTMGLFGLGAPEIAVCLA
VAAFILGPDKLAGVAKDFGKMAGELKDVPKEFQAGIIEGEANAAKTTMIE
TEAVVDAQPATKKEEEQTA*
back to top

mRNA from alignment at F-serratus_M_contig915:123323..124963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig915.20556.1 ID=mRNA_F-serratus_M_contig915.20556.1|Name=mRNA_F-serratus_M_contig915.20556.1|organism=Fucus serratus male|type=mRNA|length=1641bp|location=Sequence derived from alignment at F-serratus_M_contig915:123323..124963- (Fucus serratus male)
ATGAGGGTCTCGGTCTGCGCCTGTGCCGCGGCAATGGCTGTGGCGGCACG
ATTCGCTGAAGCATTTGTGCCCGCCCTGGGAGGTCGTGCTGGGCTCGTTC
GGGTTGGTTCTTTGCGCACGGAGACGTCCCCGTCCCCCGTGTCAGCATCC
AGGTATCGTACTATTAAATAGTACGAGTACCATTAATATAAAAATTAATC
CGAACTGGCATTACGTAAGAGAACGCTTCCGCCCTCGTAGTGAATAACAA
AATACAGCTTGTAGATCGAAGATGGAAGGCGTTATTCTAGTAACAAAACC
AATCAAGTGAGCGGTACTCCCTGGCGCAAATTTGCTTGGCTTGGTACGTC
AACAGGAGTCATAGTCCCTGCTTCTGACACAAGTAAAGATTTTGAGGTCA
TCGGACCGCATTTTGCTGTGCTGTTACTTAAGCACTACCTGTAATGGTAT
TAATACGAATTATTACTGTGGTAATCGTAATATCAATAGCCGAAAGGCAC
GAGGTTCGTTAGCCGAGTACTCGGCAATGTCCACGGTACAGTACAGTACA
GTACTTCGCGACGATAGGTCTCCTGAAATTCCCGTCGCCAAGATTGAAAC
AACGTACTAATAGTATTGTACCACAGTAATAGTGACATGCTTACGTCATG
TCCGAGTCCCCTTACGCGTACTCCCGTTTCGCAGGCCAAACAACGCCTTC
TCACGCACATATTTCGGTGCTTCTGGTCTGTCGACGTCCTCGCGGGTTGC
GGTTGGTCGGCCTTCTTCCTCCACGAGAACGACGATGGGCCTGTTCGGCT
TGGGTGCTCCGGAGATCGCGGTGTGTCTTGCTGTGGCAGCGTTCATTCTG
GGCCCGGACAAGTTGGCGGGTAAGCTACCGACACAACAGGCAGTAAATAA
AATGCGGTGGATTACGACGGCCGGGGGACCAAAGCTATATTTCGCGGTTG
GTTAGCCTGATGAACACTTCGTCGGGCCTATCGCATGGTTGGTTTGGTGT
AACACTGTAAGGAAGGTTTTTCCGATGGCTGTGAGAGGGTCGCCGCACGT
TTTCCTCCACTCGCTATCATTTTCACTGGAGTCGCTCTCCAAAGCGCACG
TGCCGAGTTTTATACAGATAAGTGGCGTGAATAGTGGATTTTTCCGCTCC
TCCCGAGTGCACATCATGTCCTATTCTGTCCTGTCGTGCCCTCGTCGAAG
GTGTGGCGAAGGACTTTGGGAAGATGGCGGGTGAGCTCAAGGATGTGCCA
AAAGAATTCCAGGTACGAAGTTATGTCATCTGTTCACCGTCGGACTTGAT
ATCCGAACGATGAATCACTCACGCACGGTACGGTTTCCTCACCTTGCCCC
GCCAACTTTGAAATTTTGACCGTCACAATAAGGTGTGTGCTAGAATTCAA
ACCACAAACGTCCTGGTCTTGACGTACCTACTTGATCCATCCGTTTTTTT
TTTAAGTTGCAGGCTTCGTGAATGGCTGCTCATTATTGTCTTTGTCACTG
CTTCGCCGTGGTGTTAATGGTCTTGATCAGGCGGGTATAATTGAGGGGGA
GGCGAATGCCGCAAAGACCACTATGATAGAGACGGAAGCGGTCGTGGATG
CTCAGCCAGCCACAAAGAAGGAAGAGGAGCAGACAGCCTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig915:123323..124963-

>mRNA_F-serratus_M_contig915.20556.1 ID=mRNA_F-serratus_M_contig915.20556.1|Name=mRNA_F-serratus_M_contig915.20556.1|organism=Fucus serratus male|type=CDS|length=1020bp|location=Sequence derived from alignment at F-serratus_M_contig915:123323..124963- (Fucus serratus male)
ATGAGGGTCTCGGTCTGCGCCTGTGCCGCGGCAATGGCTGTGGCGGCACG
ATTCGCTGAAGCATTTGTGCCCGCCCTGGGAGGTCGTGCTGGGCTCGTTC
GGGTTGGTTCTTTGCGCACGGAGACGTCCCCGTCCCCCGTGTCAGCATCC
AGATGAGGGTCTCGGTCTGCGCCTGTGCCGCGGCAATGGCTGTGGCGGCA
CGATTCGCTGAAGCATTTGTGCCCGCCCTGGGAGGTCGTGCTGGGCTCGT
TCGGGTTGGTTCTTTGCGCACGGAGACGTCCCCGTCCCCCGTGTCAGCAT
CCAGGCCAAACAACGCCTTCTCACGCACATATTTCGGTGCTTCTGGTCTG
TCGACGTCCTCGCGGGTTGCGGTTGGTCGGCCTTCTTCCTCCACGAGAAC
GACGATGGGCCTGTTCGGCTTGGGTGCTCCGGAGATCGCGGTGTGTCTTG
CTGTGGCAGCGTTCATTCTGGGCCCGGACAAGTTGGCGGGCCAAACAACG
CCTTCTCACGCACATATTTCGGTGCTTCTGGTCTGTCGACGTCCTCGCGG
GTTGCGGTTGGTCGGCCTTCTTCCTCCACGAGAACGACGATGGGCCTGTT
CGGCTTGGGTGCTCCGGAGATCGCGGTGTGTCTTGCTGTGGCAGCGTTCA
TTCTGGGCCCGGACAAGTTGGCGGGTGTGGCGAAGGACTTTGGGAAGATG
GCGGGTGAGCTCAAGGATGTGCCAAAAGAATTCCAGGTGTGGCGAAGGAC
TTTGGGAAGATGGCGGGTGAGCTCAAGGATGTGCCAAAAGAATTCCAGGC
GGGTATAATTGAGGGGGAGGCGAATGCCGCAAAGACCACTATGATAGAGA
CGGAAGCGGTCGTGGATGCTCAGCCAGCCACAAAGAAGGAAGAGGAGCAG
ACAGCCTAAGCGGGTATAATTGAGGGGGAGGCGAATGCCGCAAAGACCAC
TATGATAGAGACGGAAGCGGTCGTGGATGCTCAGCCAGCCACAAAGAAGG
AAGAGGAGCAGACAGCCTAA
back to top