mRNA_F-serratus_M_contig915.20553.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig915.20553.1
Unique NamemRNA_F-serratus_M_contig915.20553.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig915.20553.1 vs. uniprot
Match: D8LN00_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN00_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 4.390e-62
Identity = 85/122 (69.67%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 KVYNHNLYWNSLSPNGGGEPTGDLLEAIEDAFGTFADFKDYFTSAATGHFGSGWAWLILTEDLTLDVVDSHDAENPVSEDFGFPLLTCDVWEHAYYIDYRNLRADYVDAFWELVNWEYASSE 366
            ++YNHNLYWNSLSP+GGG PTGDL  AI  AFG++ DF+  FT  A+GHFGSGWAWL++ ED ++DVVDSHDA NPVSE  GFPLL CDVWEHAYY+DY+NLRA Y++ +W LVNW+YA SE
Sbjct:   96 QIYNHNLYWNSLSPSGGGMPTGDLYTAIVAAFGSYEDFQTAFTDLASGHFGSGWAWLMMHEDGSVDVVDSHDASNPVSEGLGFPLLVCDVWEHAYYLDYQNLRASYIEGWWALVNWDYAESE 217          
BLAST of mRNA_F-serratus_M_contig915.20553.1 vs. uniprot
Match: D7FRS6_ECTSI (Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRS6_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 4.000e-60
Identity = 81/122 (66.39%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 KVYNHNLYWNSLSPNGGGEPTGDLLEAIEDAFGTFADFKDYFTSAATGHFGSGWAWLILTEDLTLDVVDSHDAENPVSEDFGFPLLTCDVWEHAYYIDYRNLRADYVDAFWELVNWEYASSE 366
            ++YNHNLYWNSLSP+GGG P GDL  AI+ AFG++ +F+  FT  A+GHFGSGWAWL++ ED ++DVVDSHDA NP S+  GFPLL CDVWEHAYY+DY+NLRA Y++ +W LVNW+YA SE
Sbjct:   96 QIYNHNLYWNSLSPSGGGVPEGDLYTAIQSAFGSYEEFQTTFTDLASGHFGSGWAWLMMHEDGSVDVVDSHDASNPESDGLGFPLLVCDVWEHAYYLDYQNLRASYIEGWWALVNWDYAESE 217          
BLAST of mRNA_F-serratus_M_contig915.20553.1 vs. uniprot
Match: A0A7S2V2G5_9STRA (Superoxide dismutase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G5_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.350e-53
Identity = 70/121 (57.85%), Postives = 97/121 (80.17%), Query Frame = 1
Query:    1 KVYNHNLYWNSLSPNGGGEPTGDLLEAIEDAFGTFADFKDYFTSAATGHFGSGWAWLILTEDLTLDVVDSHDAENPVSEDFGFPLLTCDVWEHAYYIDYRNLRADYVDAFWELVNWEYASS 363
            +++NH  YWNS+SPNGGGEP+G + +AI  +FG+F  FK+ F+++A GHFGSGWAWL   +D +L++VD+HDA NP+ E  G P+LTCDVWEHAYYIDYRN R  Y+ A+W ++NW++A+S
Sbjct:   70 QIWNHTFYWNSMSPNGGGEPSGPISDAINSSFGSFESFKEKFSASAGGHFGSGWAWLCKKDDGSLEIVDTHDASNPLKEGKGKPILTCDVWEHAYYIDYRNARPSYIAAWWNVINWDFANS 190          
BLAST of mRNA_F-serratus_M_contig915.20553.1 vs. uniprot
Match: D8LI17_ECTSI (Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI17_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.800e-53
Identity = 76/120 (63.33%), Postives = 92/120 (76.67%), Query Frame = 1
Query:    1 KVYNHNLYWNSLSPNGGGEPTGDLLEAIEDAFGTFADFKDYFTSAATGHFGSGWAWLILTEDLTLDVVDSHDAENPVSEDFGFPLLTCDVWEHAYYIDYRNLRADYVDAFWELVNWEYAS 360
            +V+NH  YW SLSP+GGGEPTG + EAIE+ FG+F  FK  F+  A GHFGSGWAWL+ TE   +DVV +HDA NPV E  G P+LTCDVWEHAYYIDYRN R  Y+ A+W LVNW++A+
Sbjct:   71 QVWNHTFYWKSLSPSGGGEPTGAVKEAIEEKFGSFEAFKKAFSDTAAGHFGSGWAWLVKTESGGVDVVGTHDASNPVKEGKGTPILTCDVWEHAYYIDYRNSRPGYIAAWWNLVNWDFAN 190          
BLAST of mRNA_F-serratus_M_contig915.20553.1 vs. uniprot
Match: A0A356T2V4_9DELT (Superoxide dismutase n=2 Tax=Myxococcales TaxID=29 RepID=A0A356T2V4_9DELT)

HSP 1 Score: 172 bits (435), Expect = 2.780e-52
Identity = 75/122 (61.48%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 KVYNHNLYWNSLSPNGGGEPTGDLLEAIEDAFGTFADFKDYFTSAATGHFGSGWAWLILTEDLTLDVVDSHDAENPVSEDFGFPLLTCDVWEHAYYIDYRNLRADYVDAFWELVNWEYASSE 366
            +V+NH  YWNSLSPNGGGEPTG + +AI+ +FG+F+DFK+ F+ AA+GHF SGWAW++ + D  LD+VD HDA NP++     P+LTCDVWEHAYYIDYRN R DY+ A+W LVNW++A+S+
Sbjct:   71 QVWNHTFYWNSLSPNGGGEPTGKIADAIKKSFGSFSDFKEQFSKAASGHFASGWAWVVTSGD-GLDIVDLHDAGNPLTMG-KTPVLTCDVWEHAYYIDYRNARPDYIAAWWNLVNWDHANSQ 190          
BLAST of mRNA_F-serratus_M_contig915.20553.1 vs. uniprot
Match: W7T7U7_9STRA (Superoxide dismutase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7U7_9STRA)

HSP 1 Score: 171 bits (433), Expect = 6.520e-52
Identity = 73/121 (60.33%), Postives = 95/121 (78.51%), Query Frame = 1
Query:    1 KVYNHNLYWNSLSPNGGGEPTGDLLEAIEDAFGTFADFKDYFTSAATGHFGSGWAWLILTEDLTLDVVDSHDAENPVSEDFGFPLLTCDVWEHAYYIDYRNLRADYVDAFWELVNWEYASS 363
            +V+NH  YWNS++PN GG P+G + + I  AFG+F +FK  F++AA GHFGSGWAWL+L +D  L+VV +HDA NP+ E  G PLLTCDVWEHAYY+DYRN R  YV+A+W LVNWE+A++
Sbjct:   72 QVWNHTFYWNSMAPNAGGAPSGPIADKINAAFGSFDNFKSQFSTAAAGHFGSGWAWLVL-KDGKLEVVSTHDASNPLKEGLGTPLLTCDVWEHAYYVDYRNARPAYVEAWWSLVNWEWANA 191          
BLAST of mRNA_F-serratus_M_contig915.20553.1 vs. uniprot
Match: A0A2N5Y3R4_9GAMM (Superoxide dismutase n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y3R4_9GAMM)

HSP 1 Score: 170 bits (430), Expect = 1.700e-51
Identity = 72/120 (60.00%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    1 KVYNHNLYWNSLSPNGGGEPTGDLLEAIEDAFGTFADFKDYFTSAATGHFGSGWAWLILTEDLTLDVVDSHDAENPVSEDFGFPLLTCDVWEHAYYIDYRNLRADYVDAFWELVNWEYAS 360
            +V+NH  YW+ +SP+GGGEPTGD+  AI+DAFG+FADFK  FT +A  +FGSGW WL+ T D T+ +V++ +AENP+++    PLLT DVWEHAYYIDYRN R  Y+DAFW LVNWE+ +
Sbjct:   70 QVWNHTFYWHCMSPDGGGEPTGDVAAAIDDAFGSFADFKQAFTDSAVSNFGSGWTWLVKTNDGTVTIVNTSNAENPLTDSTVTPLLTVDVWEHAYYIDYRNARPKYMDAFWALVNWEFVN 189          
BLAST of mRNA_F-serratus_M_contig915.20553.1 vs. uniprot
Match: A0A835ZFU3_9STRA (Superoxide dismutase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFU3_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.890e-51
Identity = 72/119 (60.50%), Postives = 92/119 (77.31%), Query Frame = 1
Query:    4 VYNHNLYWNSLSPNGGGEPTGDLLEAIEDAFGTFADFKDYFTSAATGHFGSGWAWLILTEDLTLDVVDSHDAENPVSEDFGFPLLTCDVWEHAYYIDYRNLRADYVDAFWELVNWEYAS 360
            V+NH+ YW+SLSP GGG PTG + +AI+++FG F  FK  F +AA GHFGSGWAWL+  +D +L VV +HDA NPV E  G P++TCDVWEHAYYIDYRN R  Y+ A+W LVNW++A+
Sbjct:   76 VFNHDFYWHSLSPEGGGTPTGPIADAIKESFGDFDKFKAAFDAAAGGHFGSGWAWLVKADDGSLKVVSTHDASNPVVEKLGKPIITCDVWEHAYYIDYRNARPSYLAAWWNLVNWDFAN 194          
BLAST of mRNA_F-serratus_M_contig915.20553.1 vs. uniprot
Match: A0A411HH13_9GAMM (Superoxide dismutase n=1 Tax=Pseudolysobacter antarcticus TaxID=2511995 RepID=A0A411HH13_9GAMM)

HSP 1 Score: 169 bits (427), Expect = 4.700e-51
Identity = 75/121 (61.98%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    1 KVYNHNLYWNSLSPNGGGEPTGDLLEAIEDAFGTFADFKDYFTSAATGHFGSGWAWLILTEDLTLDVVDSHDAENPVSEDFGFPLLTCDVWEHAYYIDYRNLRADYVDAFWELVNWEYASS 363
            +++NH  YW+SLSPNGGGEPTG L +AI  AFG+FA+FKD FT AA G FGSGWAWL+   D +L +V + +A  P++     PLLTCDVWEHAYYIDYRN R  Y++AFW LVNWE+A+S
Sbjct:   70 QIWNHTFYWHSLSPNGGGEPTGKLADAISKAFGSFAEFKDQFTKAAVGTFGSGWAWLVQRADGSLGIVSTSNAATPITGP-DTPLLTCDVWEHAYYIDYRNARPKYLEAFWNLVNWEFAAS 189          
BLAST of mRNA_F-serratus_M_contig915.20553.1 vs. uniprot
Match: L1LGM5_THEEQ (Superoxide dismutase n=1 Tax=Theileria equi strain WA TaxID=1537102 RepID=L1LGM5_THEEQ)

HSP 1 Score: 168 bits (426), Expect = 8.010e-51
Identity = 70/120 (58.33%), Postives = 92/120 (76.67%), Query Frame = 1
Query:    1 KVYNHNLYWNSLSPNGGGEPTGDLLEAIEDAFGTFADFKDYFTSAATGHFGSGWAWLILTEDLTLDVVDSHDAENPVSEDFGFPLLTCDVWEHAYYIDYRNLRADYVDAFWELVNWEYAS 360
            +V+NH  YWNS+ PN GGEP G + + IED FG+F  FK+ F+S   GHFGSGW WL+L +D T D+V +HDA +P+ ++ G PLL CDVWEHAYYIDYRN RA Y++A+W LVNW++A+
Sbjct:   70 QVWNHAFYWNSMGPNCGGEPVGTIRKLIEDKFGSFGKFKEDFSSLLAGHFGSGWGWLVLKDDGTADIVQTHDAGSPLRDNLGKPLLVCDVWEHAYYIDYRNDRAAYINAWWNLVNWDFAN 189          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig915.20553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN00_ECTSI4.390e-6269.67Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
D7FRS6_ECTSI4.000e-6066.39Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S2V2G5_9STRA1.350e-5357.85Superoxide dismutase n=1 Tax=Fibrocapsa japonica T... [more]
D8LI17_ECTSI2.800e-5363.33Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A356T2V4_9DELT2.780e-5261.48Superoxide dismutase n=2 Tax=Myxococcales TaxID=29... [more]
W7T7U7_9STRA6.520e-5260.33Superoxide dismutase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A2N5Y3R4_9GAMM1.700e-5160.00Superoxide dismutase n=1 Tax=Kineobactrum sedimini... [more]
A0A835ZFU3_9STRA2.890e-5160.50Superoxide dismutase n=1 Tax=Tribonema minus TaxID... [more]
A0A411HH13_9GAMM4.700e-5161.98Superoxide dismutase n=1 Tax=Pseudolysobacter anta... [more]
L1LGM5_THEEQ8.010e-5158.33Superoxide dismutase n=1 Tax=Theileria equi strain... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig915contigF-serratus_M_contig915:15045..15903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.0
Seed ortholog evalue2.6e-48
Seed eggNOG ortholog2880.D8LN00
Preferred nameSODB1
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity, acting on superoxide radicals as acceptor
EggNOG OGsCOG0605@1,KOG0876@2759
EC1.15.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size366
Cds size366
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig915.20553.1prot_F-serratus_M_contig915.20553.1Fucus serratus malepolypeptideF-serratus_M_contig915 15045..15903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932656.3509748-CDS-F-serratus_M_contig915:15044..150881622932656.3509748-CDS-F-serratus_M_contig915:15044..15088Fucus serratus maleCDSF-serratus_M_contig915 15045..15088 -
1690964407.0159059-CDS-F-serratus_M_contig915:15044..150881690964407.0159059-CDS-F-serratus_M_contig915:15044..15088Fucus serratus maleCDSF-serratus_M_contig915 15045..15088 -
1622932656.3745546-CDS-F-serratus_M_contig915:15280..154041622932656.3745546-CDS-F-serratus_M_contig915:15280..15404Fucus serratus maleCDSF-serratus_M_contig915 15281..15404 -
1690964407.027671-CDS-F-serratus_M_contig915:15280..154041690964407.027671-CDS-F-serratus_M_contig915:15280..15404Fucus serratus maleCDSF-serratus_M_contig915 15281..15404 -
1622932656.3898606-CDS-F-serratus_M_contig915:15705..159031622932656.3898606-CDS-F-serratus_M_contig915:15705..15903Fucus serratus maleCDSF-serratus_M_contig915 15706..15903 -
1690964407.037045-CDS-F-serratus_M_contig915:15705..159031690964407.037045-CDS-F-serratus_M_contig915:15705..15903Fucus serratus maleCDSF-serratus_M_contig915 15706..15903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig915.20553.1

>prot_F-serratus_M_contig915.20553.1 ID=prot_F-serratus_M_contig915.20553.1|Name=mRNA_F-serratus_M_contig915.20553.1|organism=Fucus serratus male|type=polypeptide|length=122bp
KVYNHNLYWNSLSPNGGGEPTGDLLEAIEDAFGTFADFKDYFTSAATGHF
GSGWAWLILTEDLTLDVVDSHDAENPVSEDFGFPLLTCDVWEHAYYIDYR
NLRADYVDAFWELVNWEYASSE
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mRNA from alignment at F-serratus_M_contig915:15045..15903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig915.20553.1 ID=mRNA_F-serratus_M_contig915.20553.1|Name=mRNA_F-serratus_M_contig915.20553.1|organism=Fucus serratus male|type=mRNA|length=859bp|location=Sequence derived from alignment at F-serratus_M_contig915:15045..15903- (Fucus serratus male)
AAGGTGTACAATCACAACCTATACTGGAACTCCTTGTCACCTAATGGCGG CGGGGAGCCGACCGGAGATCTCCTCGAGGCTATTGAGGATGCATTCGGAA CGTTCGCGGATTTCAAGGACTATTTCACATCGGCTGCCACCGGTCACTTT GGATCGGGCTGGGCTTGGCTTATCCTCACCGAAGACCTCACGCTGGATGT GAGGGCATTATCAGGGATAGAGCTAGGGCTAGGCTTGGGGCAAGATAGTA GACGTGTTTCGATCAAGTGCTTGGGTTCCTCTCTTGGGATGAAAAAAGAA AGCCTAGGCTTACTTGATATAACACTTGACATACACGTTCCGTGAAAAGT TTTCGTAGTCATGGGCCAAACTTTTCGCTTCAGAGGGTTTCACAGGTCCT TCTGCATAGTTTGGTAATGCTTCGAGAAATAGTTTCCAAGAAAATGCGCC ATCTAAATCCAATGACTATAGTATAAATATTACTGTTACGCCATTCCAGG TGGTGGACTCTCACGACGCAGAGAACCCTGTCTCGGAGGACTTCGGGTTT CCGCTCCTCACGTGCGACGTCTGGGAGCACGCCTACTACATTGACTACCG TAACCTGCGGGCTGATTACGTTGGTAAGCCTCAAACCTCAAGCCCGGGTG CTTCCTCTCCGGTCCACGAAAGATCACCTGGGCGAGGACTAATCTAGATT GCACTCGATCGACTCATTTTTGCCAGGCGGTAACGTATGACTATTCGTGG AACCCCTTTTTTTCTCGTCCCTCGCCCGCGTCATACTAATGATACTACTA TTATATATCGACCAGATGCCTTCTGGGAGTTGGTGAACTGGGAGTACGCC AGCAGCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig915:15045..15903-

>mRNA_F-serratus_M_contig915.20553.1 ID=mRNA_F-serratus_M_contig915.20553.1|Name=mRNA_F-serratus_M_contig915.20553.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig915:15045..15903- (Fucus serratus male)
AAGGTGTACAATCACAACCTATACTGGAACTCCTTGTCACCTAATGGCGG
CGGGGAGCCGACCGGAGATCTCCTCGAGGCTATTGAGGATGCATTCGGAA
CGTTCGCGGATTTCAAGGACTATTTCACATCGGCTGCCACCGGTCACTTT
GGATCGGGCTGGGCTTGGCTTATCCTCACCGAAGACCTCACGCTGGATAA
GGTGTACAATCACAACCTATACTGGAACTCCTTGTCACCTAATGGCGGCG
GGGAGCCGACCGGAGATCTCCTCGAGGCTATTGAGGATGCATTCGGAACG
TTCGCGGATTTCAAGGACTATTTCACATCGGCTGCCACCGGTCACTTTGG
ATCGGGCTGGGCTTGGCTTATCCTCACCGAAGACCTCACGCTGGATGTGG
TGGACTCTCACGACGCAGAGAACCCTGTCTCGGAGGACTTCGGGTTTCCG
CTCCTCACGTGCGACGTCTGGGAGCACGCCTACTACATTGACTACCGTAA
CCTGCGGGCTGATTACGTTGGTGGTGGACTCTCACGACGCAGAGAACCCT
GTCTCGGAGGACTTCGGGTTTCCGCTCCTCACGTGCGACGTCTGGGAGCA
CGCCTACTACATTGACTACCGTAACCTGCGGGCTGATTACGTTGATGCCT
TCTGGGAGTTGGTGAACTGGGAGTACGCCAGCAGCGAGATGCCTTCTGGG
AGTTGGTGAACTGGGAGTACGCCAGCAGCGAG
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