mRNA_F-serratus_M_contig91.20530.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig91.20530.1
Unique NamemRNA_F-serratus_M_contig91.20530.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig91.20530.1 vs. uniprot
Match: D7FNM9_ECTSI (Eaf6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM9_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 3.340e-64
Identity = 108/150 (72.00%), Postives = 133/150 (88.67%), Query Frame = 3 
Query:  216 ESMVVNSDEMRTLLQHRRELDESLAQLEAQIFHEEGAYIRETPCGNVIRGFECFHDSKLNTEQPKKSRMEVIEERIFSKSSYIFWQKSRERAAKEDAKKRDQQQ--ALMASRGMYIGGN--------LNGSAAGVGHIQPLSYGTHGSAV 635
            +S+VVNSDEMR L+QHR+ELDESLAQ+EAQIFH+EG+YI+ETPCGNVIRGFE FHDSKLN EQPKKSRMEVIEERIFSKSS++FWQ+SR+RAAKE+AKKR+++Q  A++A+RGM++GG          NG+A GVGH+QPL YG++GSAV
Sbjct:   16 DSLVVNSDEMRILMQHRKELDESLAQMEAQIFHDEGSYIKETPCGNVIRGFETFHDSKLNAEQPKKSRMEVIEERIFSKSSFLFWQRSRDRAAKEEAKKREREQHHAMLANRGMFMGGGSGGAGXXXANGAAEGVGHVQPLGYGSYGSAV 165
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BLAST of mRNA_F-serratus_M_contig91.20530.1 vs. uniprot
Match: A0A6H5L366_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L366_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 1.650e-60
Identity = 105/152 (69.08%), Postives = 128/152 (84.21%), Query Frame = 3 
Query:  201 PLSTGESMVVNSDEMRTLLQHRRELDESLAQLEAQIFHEEGAYIRETPCGNVIRGFECFHDSKLNTEQPKKSRMEVIEERIFSKSSYIFWQKSRERAAKEDAKKRDQQ--QALMASRGMYIGGNL--------NGSAAGVGHIQPLSYGTHG 626
            P  T +S+VVNSDEMR L+QHR+ELDESLAQLEAQIFH+EG+YI+ETPCGNVIRGFE FHDSKLN EQPKKSRMEVIEERIFSKSS++FWQ+SR+RAAKE+AKK +++   A++A+RGM +G           NG+A GVGH+QPL YG++G
Sbjct:   11 PPPTADSLVVNSDEMRILMQHRKELDESLAQLEAQIFHDEGSYIKETPCGNVIRGFENFHDSKLNAEQPKKSRMEVIEERIFSKSSFLFWQRSRDRAAKEEAKKHEREXXHAMLANRGMLMGXXXXXXXXXXANGAAEGVGHVQPLGYGSYG 162
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BLAST of mRNA_F-serratus_M_contig91.20530.1 vs. uniprot
Match: A0A0J9XCC6_GEOCN (Chromatin modification-related protein EAF6 n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XCC6_GEOCN)

HSP 1 Score: 57.0 bits (136), Expect = 1.530e-6
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 3 
Query:  243 MRTLLQHRRELDESLAQLEAQIFHEEGAYIRETPCGNVIRGFECFHDSKLNTEQPKKSRMEVIEERIFSKSSYIF 467
            ++ L+  +R +D+SL  LE Q++  EGAY+ +TP GNV+RGFE +    +   Q KK      ++R+FS SS +F
Sbjct:   28 LKELIAKKRAMDKSLNTLEEQLYKLEGAYLEDTPSGNVVRGFENY----VKGSQTKKRIGLSEQDRVFSMSSAVF 98
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig91.20530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNM9_ECTSI3.340e-6472.00Eaf6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
A0A6H5L366_9PHAE1.650e-6069.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0J9XCC6_GEOCN1.530e-640.00Chromatin modification-related protein EAF6 n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig91contigF-serratus_M_contig91:850021..853609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSimilar to Eaf6 NuA4 complex protein
Ec32 orthologEc-01_004900.1
Exons6
Model size1363
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig91.20530.1prot_F-serratus_M_contig91.20530.1Fucus serratus malepolypeptideF-serratus_M_contig91 850167..853136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932651.1500158-UTR-F-serratus_M_contig91:850020..8501661622932651.1500158-UTR-F-serratus_M_contig91:850020..850166Fucus serratus maleUTRF-serratus_M_contig91 850021..850166 +
1690964404.6891065-UTR-F-serratus_M_contig91:850020..8501661690964404.6891065-UTR-F-serratus_M_contig91:850020..850166Fucus serratus maleUTRF-serratus_M_contig91 850021..850166 +
1622932651.3191307-UTR-F-serratus_M_contig91:853136..8536091622932651.3191307-UTR-F-serratus_M_contig91:853136..853609Fucus serratus maleUTRF-serratus_M_contig91 853137..853609 +
1690964404.7672055-UTR-F-serratus_M_contig91:853136..8536091690964404.7672055-UTR-F-serratus_M_contig91:853136..853609Fucus serratus maleUTRF-serratus_M_contig91 853137..853609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932651.1706173-CDS-F-serratus_M_contig91:850166..8502881622932651.1706173-CDS-F-serratus_M_contig91:850166..850288Fucus serratus maleCDSF-serratus_M_contig91 850167..850288 +
1690964404.6995647-CDS-F-serratus_M_contig91:850166..8502881690964404.6995647-CDS-F-serratus_M_contig91:850166..850288Fucus serratus maleCDSF-serratus_M_contig91 850167..850288 +
1622932651.1947486-CDS-F-serratus_M_contig91:851129..8512461622932651.1947486-CDS-F-serratus_M_contig91:851129..851246Fucus serratus maleCDSF-serratus_M_contig91 851130..851246 +
1690964404.7099166-CDS-F-serratus_M_contig91:851129..8512461690964404.7099166-CDS-F-serratus_M_contig91:851129..851246Fucus serratus maleCDSF-serratus_M_contig91 851130..851246 +
1622932651.2176263-CDS-F-serratus_M_contig91:851511..8516131622932651.2176263-CDS-F-serratus_M_contig91:851511..851613Fucus serratus maleCDSF-serratus_M_contig91 851512..851613 +
1690964404.725451-CDS-F-serratus_M_contig91:851511..8516131690964404.725451-CDS-F-serratus_M_contig91:851511..851613Fucus serratus maleCDSF-serratus_M_contig91 851512..851613 +
1622932651.2472224-CDS-F-serratus_M_contig91:851951..8520881622932651.2472224-CDS-F-serratus_M_contig91:851951..852088Fucus serratus maleCDSF-serratus_M_contig91 851952..852088 +
1690964404.7371924-CDS-F-serratus_M_contig91:851951..8520881690964404.7371924-CDS-F-serratus_M_contig91:851951..852088Fucus serratus maleCDSF-serratus_M_contig91 851952..852088 +
1622932651.2623618-CDS-F-serratus_M_contig91:852403..8525371622932651.2623618-CDS-F-serratus_M_contig91:852403..852537Fucus serratus maleCDSF-serratus_M_contig91 852404..852537 +
1690964404.7492409-CDS-F-serratus_M_contig91:852403..8525371690964404.7492409-CDS-F-serratus_M_contig91:852403..852537Fucus serratus maleCDSF-serratus_M_contig91 852404..852537 +
1622932651.2930925-CDS-F-serratus_M_contig91:853004..8531361622932651.2930925-CDS-F-serratus_M_contig91:853004..853136Fucus serratus maleCDSF-serratus_M_contig91 853005..853136 +
1690964404.7588725-CDS-F-serratus_M_contig91:853004..8531361690964404.7588725-CDS-F-serratus_M_contig91:853004..853136Fucus serratus maleCDSF-serratus_M_contig91 853005..853136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig91.20530.1

>prot_F-serratus_M_contig91.20530.1 ID=prot_F-serratus_M_contig91.20530.1|Name=mRNA_F-serratus_M_contig91.20530.1|organism=Fucus serratus male|type=polypeptide|length=248bp
MFRDSPQQHRSETSYPPVPLSTGESMVVNSDEMRTLLQHRRELDESLAQL
EAQIFHEEGAYIRETPCGNVIRGFECFHDSKLNTEQPKKSRMEVIEERIF
SKSSYIFWQKSRERAAKEDAKKRDQQQALMASRGMYIGGNLNGSAAGVGH
IQPLSYGTHGSAVHGGAVHPAPAALPAPSHHGNSSHKSHKKRHPDGHSHS
HKKKKKKRSSAPSSLNAGYGGGNSQGGDGSGGGSSGSSMPVNHFDPI*
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mRNA from alignment at F-serratus_M_contig91:850021..853609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig91.20530.1 ID=mRNA_F-serratus_M_contig91.20530.1|Name=mRNA_F-serratus_M_contig91.20530.1|organism=Fucus serratus male|type=mRNA|length=3589bp|location=Sequence derived from alignment at F-serratus_M_contig91:850021..853609+ (Fucus serratus male)
AGCTATCATCGAGGACAAAGACCTCTGATAGCAGACGTGTTTAACTCTTC
GAAATATTTCGTGGGCTAGATACTATTAATAGTGAGAGTTCGAGTCGGAT
TCATTTTACAGTTTACCCAGACATCTCGACTACCGCAGTCAGAGCTATGT
TTCGCGATAGCCCGCAGCAGCATCGGTCGGAGACCTCCTATCCCCCTGTT
CCATTATCTACAGGAGAGAGCATGGTTGTCAATTCAGATGAGATGCGCAC
GCTTCTGCAACACAGGAGGTCAGTTAATATTGAGAGTGATGCGTCTTCCG
TTTGTTGAAATATTTACCTGTAAGCATTTTTCGACAACGATTACAGGCTT
TAATATCTTGATCTTTGTAACGGTATGCATTCTTATTTTTTTACTTAATT
GAATTTAGAGAAGTGGATCCCCGCCAGGCCAAAGGGGGTGTGGCGCGGGG
GTGGCGACGGGGGACACCCGTAACTCGCTCTTCTCCCTTCTTCGCATTTT
TACCAGGGATGTCTCAAATAAAAATGACTAGTGTAGCGGATAGTTGCATG
CTAGCGAGCCAGATTCGACCCAATTTTCCACGTTTTGGATTGAAAATATT
TGCATAAAAAAAACGGATGAAAATCAAACACTCCAACTGTAAACTTTTTG
TTTTGGGCTACAGAAATTTTACTCAACACTCGAAAATTAGAATTGTCAGA
CCAATTCCGAATAATAATCATTTATGAATATCAACATAATAACACGATCA
AAGATCGTGCGACTCGGGCGCGCCAAGGTTCATGGTTGCTCCTGTCGTAA
AATAGGCTGTCTGCCGTAAGAGCTCGAAATCGTGACGGTGATGCATCGGC
GAAGCTGTACTCCGCTCAATGGTTTTCACTACGGCACAACGCCTTTTGCC
GAATGAGTCGCAGCCATGCAGTATCGGCTTGTCCATGTACTCAAACACTA
TTCTCTGACCTGAATTACGTGTTCCTCTACAGATTTCACCGACACGCAAA
GCGACGATTTGAGTCCTCTCAAACGTTTGGAGCACGAATCACGCAAACAG
TACCGTACAGTATAAGTACTCCACGTCTGCATGATCAAAACCCGAACCCT
CTAAAATAGGGAGCTGGACGAAAGTCTCGCCCAGTTGGAGGCACAGATTT
TTCACGAAGAAGGGGCGTACATCAGGGAAACCCCGTGCGGGAACGTAATA
CGCGGTTTCGAGTGCTTCCACGACAGGTGCGGTCAGGTGCTTGCCTCGCG
ATAAAACTCGAGCCGTCCATTTGTGTCGTCCCTGTCCTTTACGAAGACCT
CCTCGCGTTCCTGGCTTTAAACGTGTCGGCATCGAAAGTATGACGTCGGG
ATCGTGCTCGAAAACAGCTTCCGCATCCCTTCCGCTTACCGTGGCATCGC
CAGCATTGATCGGGGCCTGCCGATCAGCGTTTCACCGAACTCCTTGACCC
CCCCTTTCACGACCGTGCCTCTCACCCAACGACGCGTGCAGCAAACTGAA
CACTGAGCAACCTAAGAAATCCCGCATGGAGGTCATTGAAGAGCGTATTT
TCAGCAAGTCGTCCTACATCTTCTGGCAGAAGTCACGAGAGCGGTGGGTT
GTGAGTGGCATGGGCTCAACACTTGCAACGGTGTTCAGTGCCGCGGAGCT
GTCTATCTCCGAGAAGGTGTCATTTATCCGCCCCTCTTTGCCGGTTCTCG
AATTATTTGACGTCGGTATGAATTGCGGACATTATCACAAACAACCGCCC
CAAAAAAGCCCTCGCACCAGGAAAACGAATTGCGATAAAACGACGTCCAA
ATCCCTCTGTGCTTCTCGCTTCGTACGTAACAAAATACTGTAGTGTTTTT
CCTTTCGTCCGAACATCGCAACTTTCCGATTGGTTCGGTGCACTGGCTAT
CCACGACTTTACCTTTGTGTTCCAACGGCAGGGCCGCAAAAGAGGATGCC
AAGAAGCGCGACCAACAGCAAGCGCTCATGGCGAGTCGAGGGATGTACAT
TGGCGGAAACCTAAACGGCTCAGCGGCAGGAGTCGGACATATCCAGCCCT
TAAGCTACGGCACGCACGGTGGGGGGGCAGCCGGAGTAACTAGGGAAAAT
ATATATTGCTATTGTGCCAAATTCTTGGACGCAATCGTTGTCACTTTGTT
CCAGCGTGGATCCTCCCACGACCGTCACCCTCATTGTCGCCCACGCCTCC
GTATTCCGTTCTTACGTCGTAGGTCTTGGGTGAGGTATCGACGCCGGGCC
GGGCGAAGTAGGAGCTAAAAATTGGAGTGATCCGTCGAGAGAAAAATAAA
AACGCGCGCAGCCACGTGATACGTACGCTTTTCATTGCCGTGTATCGTCC
CCCGGTGAAAAATGCCTCCGCGGTATTGATTAGGATCGGCGGTGCACGGC
GGTGCTGTCCATCCAGCTCCGGCGGCACTACCAGCACCAAGCCACCACGG
CAACAGCAGTCATAAATCACACAAGAAGCGACATCCGGATGGCCACAGCC
ACAGCCACAAGAAGAAGGTGTCCCTAAAAAAAAAAAAAAAAAAAAAACTT
CTTACTACGCCATGTAGCTGGCCCGAGAAGTTTGAAAGATACTGTTGCCA
GAGGGGCCCAGCTCTCGCCTTACATAACCCCAACTTCGAGCACACGCACC
TAATGCAGCATCGTACAGTTCTTTCTAGGGTGTAGCAGTTCGTTCGGTTA
CGGGCGCAACCTTTTCGCATAATCTTGTCGCGTGCACGAAACCCTGATGC
TTCTCGCCCCTCTGGCTCGTTCATCCGAGCGGGGTTTACGCACTCCCGAG
ACGACCGAGTGTCGAACTTTCGCGGCAGTCGATCGATCAATCGGCCCTTC
CCGTCAAAAACCCCACTATCCATACTGCCATCGTCGAAGCAAGCAGTGAA
AATAGTTGTTCTGTCGCAACGAATCCAAATTTGACGCATTCGTTATCCTC
GACACTACATACTCTACGCCACCTCCACTTGCAGAAGAAGAAAAGGAGCT
CGGCTCCGTCCAGCCTCAACGCTGGCTACGGCGGAGGAAACTCTCAAGGC
GGAGACGGCAGCGGGGGCGGTTCGTCTGGATCGTCCATGCCAGTAAATCA
CTTCGACCCGATCTAGAACCTGCAAATGTTGAAGCACCTCTTGTTACACG
TTGATGTAGTCATAGTCTACCTATTAATAGAGTGGAACTGCGTGCTGTAC
TGAGTATTGGGATAGCGCCGCGAGCGCGAAATCAATCCTTCGATGGCGTG
CAACGCTCGAGGCTTCTGTTTGTCCCAACGTTGGTATTCGATAGAGACAC
CGCTGCCGTGCCTTGCGAGCTGAATGATCTGTAGCCTTTTTCTGTGTTGT
GTTAAAAGTGTTATTATGTCCGTCTCGGTATTTCGGTGGGGTTCCGTGAG
TGCTCGTTGCTGAGCTCAGGGGGGTTTCGTTGAGGAGTGATAGTATCCGG
AGGCGGATGTTTGGGAATCGTGTCTGGAGGAGCATGCCCGGGAAGGAACC
CTTCAAGGCAAAAAAGGCGAGAAGGAACATACCTCACCTGAGTACGTCGG
GGCAGTTTAAATCCTACTGGTACAGAATGTTACGAATTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig91:850021..853609+

>mRNA_F-serratus_M_contig91.20530.1 ID=mRNA_F-serratus_M_contig91.20530.1|Name=mRNA_F-serratus_M_contig91.20530.1|organism=Fucus serratus male|type=CDS|length=1488bp|location=Sequence derived from alignment at F-serratus_M_contig91:850021..853609+ (Fucus serratus male)
ATGTTTCGCGATAGCCCGCAGCAGCATCGGTCGGAGACCTCCTATCCCCC
TGTTCCATTATCTACAGGAGAGAGCATGGTTGTCAATTCAGATGAGATGC
GCACGCTTCTGCAACACAGGAGATGTTTCGCGATAGCCCGCAGCAGCATC
GGTCGGAGACCTCCTATCCCCCTGTTCCATTATCTACAGGAGAGAGCATG
GTTGTCAATTCAGATGAGATGCGCACGCTTCTGCAACACAGGAGGGAGCT
GGACGAAAGTCTCGCCCAGTTGGAGGCACAGATTTTTCACGAAGAAGGGG
CGTACATCAGGGAAACCCCGTGCGGGAACGTAATACGCGGTTTCGAGTGC
TTCCACGACAGGGAGCTGGACGAAAGTCTCGCCCAGTTGGAGGCACAGAT
TTTTCACGAAGAAGGGGCGTACATCAGGGAAACCCCGTGCGGGAACGTAA
TACGCGGTTTCGAGTGCTTCCACGACAGCAAACTGAACACTGAGCAACCT
AAGAAATCCCGCATGGAGGTCATTGAAGAGCGTATTTTCAGCAAGTCGTC
CTACATCTTCTGGCAGAAGTCACGAGAGCGCAAACTGAACACTGAGCAAC
CTAAGAAATCCCGCATGGAGGTCATTGAAGAGCGTATTTTCAGCAAGTCG
TCCTACATCTTCTGGCAGAAGTCACGAGAGCGGGCCGCAAAAGAGGATGC
CAAGAAGCGCGACCAACAGCAAGCGCTCATGGCGAGTCGAGGGATGTACA
TTGGCGGAAACCTAAACGGCTCAGCGGCAGGAGTCGGACATATCCAGCCC
TTAAGCTACGGCACGCACGGGCCGCAAAAGAGGATGCCAAGAAGCGCGAC
CAACAGCAAGCGCTCATGGCGAGTCGAGGGATGTACATTGGCGGAAACCT
AAACGGCTCAGCGGCAGGAGTCGGACATATCCAGCCCTTAAGCTACGGCA
CGCACGGATCGGCGGTGCACGGCGGTGCTGTCCATCCAGCTCCGGCGGCA
CTACCAGCACCAAGCCACCACGGCAACAGCAGTCATAAATCACACAAGAA
GCGACATCCGGATGGCCACAGCCACAGCCACAAGAAGAAGGATCGGCGGT
GCACGGCGGTGCTGTCCATCCAGCTCCGGCGGCACTACCAGCACCAAGCC
ACCACGGCAACAGCAGTCATAAATCACACAAGAAGCGACATCCGGATGGC
CACAGCCACAGCCACAAGAAGAAGAAGAAGAAAAGGAGCTCGGCTCCGTC
CAGCCTCAACGCTGGCTACGGCGGAGGAAACTCTCAAGGCGGAGACGGCA
GCGGGGGCGGTTCGTCTGGATCGTCCATGCCAGTAAATCACTTCGACCCG
ATCTAGAAGAAGAAAAGGAGCTCGGCTCCGTCCAGCCTCAACGCTGGCTA
CGGCGGAGGAAACTCTCAAGGCGGAGACGGCAGCGGGGGCGGTTCGTCTG
GATCGTCCATGCCAGTAAATCACTTCGACCCGATCTAG
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