mRNA_F-serratus_M_contig91.20525.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig91.20525.1
Unique NamemRNA_F-serratus_M_contig91.20525.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig91.20525.1 vs. uniprot
Match: A0A6H5L5M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M4_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.150e-45
Identity = 76/115 (66.09%), Postives = 101/115 (87.83%), Query Frame = 2 
Query:   11 MDSHLLSHPDVRLFFYAFLLLLGIYVSVMCTCFGTLSIRKAKSLFREYENLQQRYDATFQRRDDVLHHIGGARNRGEHDQAALLEKQLARVDGDLDVLEQRLQNLDERHSNKRPK 355
            MDSHLL+HPDVR+  Y+FLLLLGIYVSVM TC+GT+S+ K K+ F+E ++L++ Y+AT QRR+D+L+HIGGA+ RGEH QAA+L+KQL RVDGDLD++E+RL++LD RH +KRPK
Sbjct:    1 MDSHLLAHPDVRVLLYSFLLLLGIYVSVMYTCWGTVSLSKVKAEFKERQDLERAYEATLQRREDMLYHIGGAQQRGEHQQAAVLDKQLLRVDGDLDLIEERLRDLDARHRSKRPK 115
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig91.20525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5M4_9PHAE2.150e-4566.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig91contigF-serratus_M_contig91:777426..778623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size811
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig91.20525.1prot_F-serratus_M_contig91.20525.1Fucus serratus malepolypeptideF-serratus_M_contig91 777873..778613 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932650.1100993-UTR-F-serratus_M_contig91:777425..7778721622932650.1100993-UTR-F-serratus_M_contig91:777425..777872Fucus serratus maleUTRF-serratus_M_contig91 777426..777872 -
1690964404.2852519-UTR-F-serratus_M_contig91:777425..7778721690964404.2852519-UTR-F-serratus_M_contig91:777425..777872Fucus serratus maleUTRF-serratus_M_contig91 777426..777872 -
1622932650.1461604-UTR-F-serratus_M_contig91:778613..7786231622932650.1461604-UTR-F-serratus_M_contig91:778613..778623Fucus serratus maleUTRF-serratus_M_contig91 778614..778623 -
1690964404.326586-UTR-F-serratus_M_contig91:778613..7786231690964404.326586-UTR-F-serratus_M_contig91:778613..778623Fucus serratus maleUTRF-serratus_M_contig91 778614..778623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932650.122049-CDS-F-serratus_M_contig91:777872..7781061622932650.122049-CDS-F-serratus_M_contig91:777872..778106Fucus serratus maleCDSF-serratus_M_contig91 777873..778106 -
1690964404.2947893-CDS-F-serratus_M_contig91:777872..7781061690964404.2947893-CDS-F-serratus_M_contig91:777872..778106Fucus serratus maleCDSF-serratus_M_contig91 777873..778106 -
1622932650.1331658-CDS-F-serratus_M_contig91:778493..7786131622932650.1331658-CDS-F-serratus_M_contig91:778493..778613Fucus serratus maleCDSF-serratus_M_contig91 778494..778613 -
1690964404.309162-CDS-F-serratus_M_contig91:778493..7786131690964404.309162-CDS-F-serratus_M_contig91:778493..778613Fucus serratus maleCDSF-serratus_M_contig91 778494..778613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig91.20525.1

>prot_F-serratus_M_contig91.20525.1 ID=prot_F-serratus_M_contig91.20525.1|Name=mRNA_F-serratus_M_contig91.20525.1|organism=Fucus serratus male|type=polypeptide|length=118bp
MDSHLLSHPDVRLFFYAFLLLLGIYVSVMCTCFGTLSIRKAKSLFREYEN
LQQRYDATFQRRDDVLHHIGGARNRGEHDQAALLEKQLARVDGDLDVLEQ
RLQNLDERHSNKRPKKM*
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mRNA from alignment at F-serratus_M_contig91:777426..778623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig91.20525.1 ID=mRNA_F-serratus_M_contig91.20525.1|Name=mRNA_F-serratus_M_contig91.20525.1|organism=Fucus serratus male|type=mRNA|length=1198bp|location=Sequence derived from alignment at F-serratus_M_contig91:777426..778623- (Fucus serratus male)
GCTCGACGTCATGGATTCCCATCTTCTATCCCACCCCGATGTTCGGCTGT
TTTTTTACGCATTTCTCCTTCTGCTTGGGATATACGTGTCTGTGATGTGT
ACATGCTTCGGGACGTTGTCAATTAGAAAGGTGAGAATACCAGTACCACT
TTCAGTATGCTTTACGATATTATTCCAGTATAGTGTATAATGCAGACTAG
ATACCGAAGTTGGACGCGAAAATGTAGCAGCACCTCTAGTCTACGAGTAC
AGCACAACCATCGATTTGTACCCCGAAGAAGGGTAAAAAACGTGCCTGCG
ACAATCTGGGCTTGAGGCTCCACATCCTAACCGTCGACAGGCAAACGGGC
AAAGCTCTTCTTGTCTGCAGTAATGCCTCGAAGTTCAAATAACGAGCAAC
GGCCAGTAGCAAGAAAATCAGTCCGCTCCTCAAGACCAAATCTGCATCCG
TGCCAAATTCTCCAGACACATCGCCAACTTTTAAGCAACGCACCCCTCTG
CCATCGCCGAAAATCAGGCAAAATCGTTGTTCAGAGAATACGAAAATTTG
CAGCAACGCTACGACGCCACCTTCCAGAGACGAGACGACGTGCTCCACCA
CATCGGTGGCGCAAGAAACCGCGGAGAGCACGATCAAGCGGCCCTACTAG
AGAAGCAACTAGCCAGAGTAGACGGCGACCTCGATGTTTTAGAACAGCGT
TTGCAAAATCTCGATGAACGACACAGCAACAAGAGGCCCAAGAAGATGTA
GTTGAGAAATGAGAATCCCGCGAGGCGTGCTGAGGTTGATTGCGGACTCG
AATAATCTCATGTAAAATCACGGCACTCAGCAATTATTTTGCAGATATAC
CTTCTACTCTGTACGAAGTTCGTATTATAGTATGTTACTTGTATAGAGCC
TACTCTTTTTTTTGCGTTGAAAGGATGATGCAGATACCCGTGATGCAGAT
ACCCGAATCATCTGAAAGCCGTGTGCCTCTCTGGCGAAGGTTCGGTTGGG
GCGATGTAGAGACTTTTCCAAATTGTGTATTGCTATCTTGAAAAAACTGG
AAAATTATTTTACACCTATTATGCCAGCAGTTGAGGTAAAGGTTTGAAAA
AAGGCATCCCGCTCGAGATAGGTTGATACGCCTCGGGACAGCTTGAACAT
CTTTTCGGACTTTGGATCTAACAGGAATCCCACAGAAAAGAATATCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig91:777426..778623-

>mRNA_F-serratus_M_contig91.20525.1 ID=mRNA_F-serratus_M_contig91.20525.1|Name=mRNA_F-serratus_M_contig91.20525.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig91:777426..778623- (Fucus serratus male)
ATGGATTCCCATCTTCTATCCCACCCCGATGTTCGGCTGTTTTTTTACGC
ATTTCTCCTTCTGCTTGGGATATACGTGTCTGTGATGTGTACATGCTTCG
GGACGTTGTCAATTAGAAAGATGGATTCCCATCTTCTATCCCACCCCGAT
GTTCGGCTGTTTTTTTACGCATTTCTCCTTCTGCTTGGGATATACGTGTC
TGTGATGTGTACATGCTTCGGGACGTTGTCAATTAGAAAGGCAAAATCGT
TGTTCAGAGAATACGAAAATTTGCAGCAACGCTACGACGCCACCTTCCAG
AGACGAGACGACGTGCTCCACCACATCGGTGGCGCAAGAAACCGCGGAGA
GCACGATCAAGCGGCCCTACTAGAGAAGCAACTAGCCAGAGTAGACGGCG
ACCTCGATGTTTTAGAACAGCGTTTGCAAAATCTCGATGAACGACACAGC
AACAAGAGGCCCAAGAAGATGTAGGCAAAATCGTTGTTCAGAGAATACGA
AAATTTGCAGCAACGCTACGACGCCACCTTCCAGAGACGAGACGACGTGC
TCCACCACATCGGTGGCGCAAGAAACCGCGGAGAGCACGATCAAGCGGCC
CTACTAGAGAAGCAACTAGCCAGAGTAGACGGCGACCTCGATGTTTTAGA
ACAGCGTTTGCAAAATCTCGATGAACGACACAGCAACAAGAGGCCCAAGA
AGATGTAG
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