mRNA_F-serratus_M_contig91.20503.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig91.20503.1
Unique NamemRNA_F-serratus_M_contig91.20503.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig91.20503.1 vs. uniprot
Match: A0A6H5L1M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M6_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.880e-48
Identity = 117/285 (41.05%), Postives = 152/285 (53.33%), Query Frame = 1 
Query:  388 DAMAVIDPFPMNAGALRASVERVPEGELCSHTFLASLTQVVKNPQTRIAKWVKRKGSSEPSS-----APVKERREQDFGDLRGFERELTNYLLAPRTSQELLVFCRQKIGLEFAEDPEGGN-----------------------------------------------GAGVGEGNEGDSNRVQPRIDDSAIANDIASAILSWGPPFRSIETTWRAAAAPSGYS-VVSASPTITPRVPLMVLCSGQEVLRGKPSPLLGPGVIGEPLSVDVTVEDVKWLRNRWTST 1083
            D  A ++ FP+NAGALRA+VE+VPE  LCSH +LA L  +V   +    K    K S+E SS     +   ERRE+DF  LR  +  +  +LL PRT  ELLVFCR+ +GLEF  DP                                                       G+G      RV+PR++D  I  DIA A+L+WG PFR++ET WR AA   GYS + S  P  TPRV   VLCS +EVL+G+PSP L PG +G PL+VDV+VEDV+WL++ W S+
Sbjct:  775 DPKAAVEYFPVNAGALRATVEKVPENALCSHRYLAPLVDLVSTGKEEAGKCGGDK-SAEGSSIRGAGSEAAERRERDFSKLRDSKDRVAEFLLKPRTPDELLVFCRRTLGLEFLADPPARRLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDG------RVRPRMEDPTIMVDIARAVLAWGKPFRNVETAWRPAAVGQGYSFMTSRLPEPTPRVSSPVLCSAREVLKGEPSPFLRPGAVGPPLAVDVSVEDVRWLKDEWDSS 1052
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BLAST of mRNA_F-serratus_M_contig91.20503.1 vs. uniprot
Match: D8LNT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNT1_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 2.530e-44
Identity = 115/297 (38.72%), Postives = 158/297 (53.20%), Query Frame = 1 
Query:  349 QGGEIPVASEQRPDA-MAVIDPFPMNAGALRASVERVPEGELCSHTFLASLTQVV---KNPQTRIAKWVKRKGSS-EPSSAPVKERREQDFGDLRGFERELTNYLLAPRTSQELLVFCRQKIGLEF-AEDPE---------------------------------------------GGNGAGVGEGNEGDSNRVQPRIDDSAIANDIASAILSWGPPFRSIETTWRAAAAPSGYSVVSAS-PTITPRVPLMVLCSGQEVLRGKPSPLLGPGVIGEPLSVDVTVEDVKWLRNRWTST 1083
            +GG   V  + RP    A ++ FP+NAGAL A+VE+VPE  +C H +LA L  +V   K            +GSS   +++   ERRE+DF  LR  +  +  +LL PRT  ELLVFCR+ +GLEF A+DP                                                     G+G      R +PR++D+ I  DIA A+L+WG PFR++ET WR AA   GYSV+++  P   PRV   VLCS +EVL+G+PSP L PG +G PL+VDV+VEDV+WL++ W S+
Sbjct:  853 EGGS--VGGKGRPGGPKAAVEYFPVNAGALCAAVEKVPENAICGHRYLAPLVALVSTGKGESGDCGGDKSAEGSSIRGAASEAAERRERDFSKLRDSKDRVAEFLLKPRTPDELLVFCRRTLGLEFPADDPPVRRLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDG------RARPRVEDATIMVDIARAVLAWGKPFRNVETAWRPAAVGQGYSVMTSRLPGPLPRVSAPVLCSAREVLKGEPSPFLRPGSVGPPLAVDVSVEDVRWLKDEWDSS 1141
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig91.20503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1M6_9PHAE1.880e-4841.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNT1_ECTSI2.530e-4438.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig91contigF-serratus_M_contig91:159142..161386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1282
Cds size1077
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig91.20503.1prot_F-serratus_M_contig91.20503.1Fucus serratus malepolypeptideF-serratus_M_contig91 159154..161193 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932645.2308397-UTR-F-serratus_M_contig91:159141..1591531622932645.2308397-UTR-F-serratus_M_contig91:159141..159153Fucus serratus maleUTRF-serratus_M_contig91 159142..159153 +
1690964401.891551-UTR-F-serratus_M_contig91:159141..1591531690964401.891551-UTR-F-serratus_M_contig91:159141..159153Fucus serratus maleUTRF-serratus_M_contig91 159142..159153 +
1622932645.2896433-UTR-F-serratus_M_contig91:161193..1613861622932645.2896433-UTR-F-serratus_M_contig91:161193..161386Fucus serratus maleUTRF-serratus_M_contig91 161194..161386 +
1690964401.940827-UTR-F-serratus_M_contig91:161193..1613861690964401.940827-UTR-F-serratus_M_contig91:161193..161386Fucus serratus maleUTRF-serratus_M_contig91 161194..161386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932645.2479153-CDS-F-serratus_M_contig91:159153..1593111622932645.2479153-CDS-F-serratus_M_contig91:159153..159311Fucus serratus maleCDSF-serratus_M_contig91 159154..159311 +
1690964401.902866-CDS-F-serratus_M_contig91:159153..1593111690964401.902866-CDS-F-serratus_M_contig91:159153..159311Fucus serratus maleCDSF-serratus_M_contig91 159154..159311 +
1622932645.2634869-CDS-F-serratus_M_contig91:159610..1600761622932645.2634869-CDS-F-serratus_M_contig91:159610..160076Fucus serratus maleCDSF-serratus_M_contig91 159611..160076 +
1690964401.9137008-CDS-F-serratus_M_contig91:159610..1600761690964401.9137008-CDS-F-serratus_M_contig91:159610..160076Fucus serratus maleCDSF-serratus_M_contig91 159611..160076 +
1622932645.277805-CDS-F-serratus_M_contig91:160740..1611931622932645.277805-CDS-F-serratus_M_contig91:160740..161193Fucus serratus maleCDSF-serratus_M_contig91 160741..161193 +
1690964401.929682-CDS-F-serratus_M_contig91:160740..1611931690964401.929682-CDS-F-serratus_M_contig91:160740..161193Fucus serratus maleCDSF-serratus_M_contig91 160741..161193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig91.20503.1

>prot_F-serratus_M_contig91.20503.1 ID=prot_F-serratus_M_contig91.20503.1|Name=mRNA_F-serratus_M_contig91.20503.1|organism=Fucus serratus male|type=polypeptide|length=359bp
MLVYATSVSDVFGQRLEMGRMGGNDDREGDDAATLPVLASYRCPIFAERI
QSMLPCGDVSLDPKATEGLNPGDVPTDHEGSSANGERDVSGAAPATSFRP
PTDRGRTERHNGQGGEIPVASEQRPDAMAVIDPFPMNAGALRASVERVPE
GELCSHTFLASLTQVVKNPQTRIAKWVKRKGSSEPSSAPVKERREQDFGD
LRGFERELTNYLLAPRTSQELLVFCRQKIGLEFAEDPEGGNGAGVGEGNE
GDSNRVQPRIDDSAIANDIASAILSWGPPFRSIETTWRAAAAPSGYSVVS
ASPTITPRVPLMVLCSGQEVLRGKPSPLLGPGVIGEPLSVDVTVEDVKWL
RNRWTSTV*
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mRNA from alignment at F-serratus_M_contig91:159142..161386+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig91.20503.1 ID=mRNA_F-serratus_M_contig91.20503.1|Name=mRNA_F-serratus_M_contig91.20503.1|organism=Fucus serratus male|type=mRNA|length=2245bp|location=Sequence derived from alignment at F-serratus_M_contig91:159142..161386+ (Fucus serratus male)
GGTGGTGGTCTGATGCTGGTCTACGCTACGTCGGTGAGTGACGTCTTCGG
GCAGCGGTTGGAGATGGGCCGGATGGGAGGCAACGATGACCGAGAAGGGG
ATGACGCTGCCACCCTTCCTGTCTTGGCCTCATACCGATGTCCCATCTTC
GCCGAACGCATTCAGTCCATGTGAGCAACTCCCTCAAATACCGGTCTAGA
TTATAGAGCTATCGAGATTGGACGGGCTACTTTTTTTTTTTTTTGAAGGC
GGGGTTGCCTCGTTAGTGCGGTCATAAATGCCGTTGAAATAATTTGCTTG
AAGAGGGGAAGAGGGGAAGGATCGGTATGATACTTTAGGAGTGCTGGAAT
GCGAACCGCCATGCCTTGTTTTTTCCAACCCAACCCCCTCGCCCCATTAA
AAAGTATATAAACCCCCCAAGTGGTACTCATGCTGTGGCCTAGTCTATAT
TCCATAACAACCATTTCAGGCTCCCGTGCGGAGACGTGAGCTTGGATCCC
AAGGCTACGGAGGGACTCAATCCTGGCGACGTTCCGACGGACCATGAAGG
CTCAAGTGCTAACGGCGAGCGCGACGTGTCGGGGGCGGCACCAGCGACGT
CGTTCCGCCCCCCCACAGACAGAGGGAGAACAGAACGCCACAACGGTCAA
GGCGGAGAAATCCCTGTGGCCTCCGAGCAGCGTCCCGACGCGATGGCGGT
GATAGATCCCTTCCCGATGAACGCGGGCGCGCTGCGGGCGTCGGTGGAGA
GGGTCCCGGAGGGGGAGCTTTGCTCACACACCTTCTTGGCTTCCTTGACG
CAAGTGGTGAAGAATCCGCAGACGAGAATAGCCAAGTGGGTGAAGCGCAA
GGGGTCTTCGGAGCCGAGCTCGGCTCCCGTCAAGGAGAGAAGGGAGCAGG
ATTTTGGTGACCTTCGAGGGTTTGAACGCGAGCTGGTGAGAATCCAGCTG
GGCTTATACTTGTAGCCGAGCTCTGTTCATGACGAACCTCTTTTCCTCCA
GTAGGGGTAATTGTAGATATATTTAGACGTACCCCGAGGCTTTCGGCCGT
GAAATGCTGTATACTTGTGATGATACCTTTTGTCTCCGACCGATGCGCCC
AATCCATTTACTATATCCTTGACCAAAAGAGCAATAGTGTCCTTGAGTAG
ACGCGCTGATTTTTCTTGTTTCTAGCATTCTTCCTCCCTGTTAATGATAA
TGATATTAATAAAATAAATACTTTATTAATAGTTGAGTACGACGATGACT
CCTCGGTGGCACAGCACGTAAAGCAAACTCTGCCAGATGTCTCGTTGTCT
GTGTATTTTCCCTTTATTTCACTCATCCATAACAAGATACCAAGTACGTT
GATACCAAGTACTTTGATTATTTCTTTTTTGACCTCCCGCAACAGTATTC
GAGCTACAGTAATAACAATGGTTGTCGACGTGAAGGCGTTTCGCTCAAGG
GTGACGAGATGAGCTCTTGCGTAACCCTGTATCCTGTATTATGGTAAACG
CAGCACAGGAAATGTAACTGTAGTGCCGTCTATACCCGCCCGCCCCTCTT
CCCTTATGACGAATCTCCGGTCTGTTCGGATCTTTTGTATGCCTCTTAGA
CCAACTATCTCTTGGCACCGAGAACTTCCCAAGAGCTGCTCGTTTTCTGC
CGACAGAAAATCGGCCTGGAGTTTGCAGAAGATCCGGAAGGCGGAAACGG
CGCTGGGGTAGGGGAAGGTAACGAGGGCGACTCCAACCGTGTGCAACCCA
GGATCGATGATTCTGCCATCGCCAACGATATTGCAAGCGCGATTCTCTCC
TGGGGCCCCCCGTTCCGGAGCATCGAGACGACTTGGAGGGCGGCGGCTGC
TCCTTCGGGGTATTCGGTCGTGTCTGCTTCTCCGACGATTACGCCTAGAG
TCCCCTTGATGGTGCTCTGCAGCGGTCAAGAGGTACTGAGGGGCAAGCCT
TCTCCCTTGTTAGGACCGGGTGTGATTGGGGAGCCCTTGTCCGTAGACGT
GACCGTTGAAGACGTCAAGTGGCTAAGGAATCGGTGGACCTCGACCGTGT
AAGCCGGTCAGGGGCTGTGTGGCGAGCGACAGGGTCCCGCTTTACCGTTC
TTCACCGTCCCTAGGACAATCTAAACTTGAGACATACGTTTGTTATGTTT
TTGAGATGGGTCTCTCTCTCTCTCTCTTTTCATTTTCTGCCTATGAGGCT
ATTAAACGCGTTGGGAGGCCAATCTCGCTGACTGAAGCTTGCCCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig91:159142..161386+

>mRNA_F-serratus_M_contig91.20503.1 ID=mRNA_F-serratus_M_contig91.20503.1|Name=mRNA_F-serratus_M_contig91.20503.1|organism=Fucus serratus male|type=CDS|length=2154bp|location=Sequence derived from alignment at F-serratus_M_contig91:159142..161386+ (Fucus serratus male)
ATGCTGGTCTACGCTACGTCGGTGAGTGACGTCTTCGGGCAGCGGTTGGA
GATGGGCCGGATGGGAGGCAACGATGACCGAGAAGGGGATGACGCTGCCA
CCCTTCCTGTCTTGGCCTCATACCGATGTCCCATCTTCGCCGAACGCATT
CAGTCCATATGCTGGTCTACGCTACGTCGGTGAGTGACGTCTTCGGGCAG
CGGTTGGAGATGGGCCGGATGGGAGGCAACGATGACCGAGAAGGGGATGA
CGCTGCCACCCTTCCTGTCTTGGCCTCATACCGATGTCCCATCTTCGCCG
AACGCATTCAGTCCATGCTCCCGTGCGGAGACGTGAGCTTGGATCCCAAG
GCTACGGAGGGACTCAATCCTGGCGACGTTCCGACGGACCATGAAGGCTC
AAGTGCTAACGGCGAGCGCGACGTGTCGGGGGCGGCACCAGCGACGTCGT
TCCGCCCCCCCACAGACAGAGGGAGAACAGAACGCCACAACGGTCAAGGC
GGAGAAATCCCTGTGGCCTCCGAGCAGCGTCCCGACGCGATGGCGGTGAT
AGATCCCTTCCCGATGAACGCGGGCGCGCTGCGGGCGTCGGTGGAGAGGG
TCCCGGAGGGGGAGCTTTGCTCACACACCTTCTTGGCTTCCTTGACGCAA
GTGGTGAAGAATCCGCAGACGAGAATAGCCAAGTGGGTGAAGCGCAAGGG
GTCTTCGGAGCCGAGCTCGGCTCCCGTCAAGGAGAGAAGGGAGCAGGATT
TTGGTGACCTTCGAGGGTTTGAACGCGAGCTGGCTCCCGTGCGGAGACGT
GAGCTTGGATCCCAAGGCTACGGAGGGACTCAATCCTGGCGACGTTCCGA
CGGACCATGAAGGCTCAAGTGCTAACGGCGAGCGCGACGTGTCGGGGGCG
GCACCAGCGACGTCGTTCCGCCCCCCCACAGACAGAGGGAGAACAGAACG
CCACAACGGTCAAGGCGGAGAAATCCCTGTGGCCTCCGAGCAGCGTCCCG
ACGCGATGGCGGTGATAGATCCCTTCCCGATGAACGCGGGCGCGCTGCGG
GCGTCGGTGGAGAGGGTCCCGGAGGGGGAGCTTTGCTCACACACCTTCTT
GGCTTCCTTGACGCAAGTGGTGAAGAATCCGCAGACGAGAATAGCCAAGT
GGGTGAAGCGCAAGGGGTCTTCGGAGCCGAGCTCGGCTCCCGTCAAGGAG
AGAAGGGAGCAGGATTTTGGTGACCTTCGAGGGTTTGAACGCGAGCTGAC
CAACTATCTCTTGGCACCGAGAACTTCCCAAGAGCTGCTCGTTTTCTGCC
GACAGAAAATCGGCCTGGAGTTTGCAGAAGATCCGGAAGGCGGAAACGGC
GCTGGGGTAGGGGAAGGTAACGAGGGCGACTCCAACCGTGTGCAACCCAG
GATCGATGATTCTGCCATCGCCAACGATATTGCAAGCGCGATTCTCTCCT
GGGGCCCCCCGTTCCGGAGCATCGAGACGACTTGGAGGGCGGCGGCTGCT
CCTTCGGGGTATTCGGTCGTGTCTGCTTCTCCGACGATTACGCCTAGAGT
CCCCTTGATGGTGCTCTGCAGCGGTCAAGAGGTACTGAGGGGCAAGCCTT
CTCCCTTGTTAGGACCGGGTGTGATTGGGGAGCCCTTGTCCGTAGACGTG
ACCGTTGAAGACGTCAAGTGGCTAAGGAATCGGTGGACCTCGACCGTGTA
AACCAACTATCTCTTGGCACCGAGAACTTCCCAAGAGCTGCTCGTTTTCT
GCCGACAGAAAATCGGCCTGGAGTTTGCAGAAGATCCGGAAGGCGGAAAC
GGCGCTGGGGTAGGGGAAGGTAACGAGGGCGACTCCAACCGTGTGCAACC
CAGGATCGATGATTCTGCCATCGCCAACGATATTGCAAGCGCGATTCTCT
CCTGGGGCCCCCCGTTCCGGAGCATCGAGACGACTTGGAGGGCGGCGGCT
GCTCCTTCGGGGTATTCGGTCGTGTCTGCTTCTCCGACGATTACGCCTAG
AGTCCCCTTGATGGTGCTCTGCAGCGGTCAAGAGGTACTGAGGGGCAAGC
CTTCTCCCTTGTTAGGACCGGGTGTGATTGGGGAGCCCTTGTCCGTAGAC
GTGACCGTTGAAGACGTCAAGTGGCTAAGGAATCGGTGGACCTCGACCGT
GTAA
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