mRNA_F-serratus_M_contig91.20497.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig91.20497.1
Unique NamemRNA_F-serratus_M_contig91.20497.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig91.20497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig91contigF-serratus_M_contig91:73634..74844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size223
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932643.8108695-CDS-F-serratus_M_contig91:73633..736951622932643.8108695-CDS-F-serratus_M_contig91:73633..73695Fucus serratus maleCDSF-serratus_M_contig91 73634..73695 -
1690964401.2324445-CDS-F-serratus_M_contig91:73633..736951690964401.2324445-CDS-F-serratus_M_contig91:73633..73695Fucus serratus maleCDSF-serratus_M_contig91 73634..73695 -
1622932643.8269882-CDS-F-serratus_M_contig91:74684..748441622932643.8269882-CDS-F-serratus_M_contig91:74684..74844Fucus serratus maleCDSF-serratus_M_contig91 74685..74844 -
1690964401.2436285-CDS-F-serratus_M_contig91:74684..748441690964401.2436285-CDS-F-serratus_M_contig91:74684..74844Fucus serratus maleCDSF-serratus_M_contig91 74685..74844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig91.20497.1prot_F-serratus_M_contig91.20497.1Fucus serratus malepolypeptideF-serratus_M_contig91 73634..74844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig91.20497.1

>prot_F-serratus_M_contig91.20497.1 ID=prot_F-serratus_M_contig91.20497.1|Name=mRNA_F-serratus_M_contig91.20497.1|organism=Fucus serratus male|type=polypeptide|length=74bp
SPTQGPRNQRPRPGRRDGNKKTDLNRRSPKQERIRQKQRQRRTGRSTLLR
HTAGWRSIVECGTRETFNEAREA*
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mRNA from alignment at F-serratus_M_contig91:73634..74844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig91.20497.1 ID=mRNA_F-serratus_M_contig91.20497.1|Name=mRNA_F-serratus_M_contig91.20497.1|organism=Fucus serratus male|type=mRNA|length=1211bp|location=Sequence derived from alignment at F-serratus_M_contig91:73634..74844- (Fucus serratus male)
AGTCCGACCCAGGGTCCAAGAAACCAGAGGCCTCGCCCCGGCAGACGCGA
CGGAAACAAAAAAACAGACCTTAATCGGCGAAGCCCAAAACAGGAGAGGA
TTCGACAAAAACAACGACAACGAAGAACAGGGAGATCAACACTGCTCCGT
CATACTGCCGGTACTTTCTAAACCCCCCTGTTATAGTGAATGGTTAGGTT
CATTGAGCCTTCGTTCTCCCCTTGCGTCTTGGGGAGTCTTTGTGTCTGTC
TCTCTTGGGAGTCTCTCTTTCCTCTAACTCTACAGTCAGTACATAAACCT
ACCATATATTATAGTATATCATGTTTGAAAATGGGACTTGGTACAAGACA
GTATTTTTTGCTCTATACCTCCTGCTCATTTTTCCTCCCTGTACCCGAAT
CCTTCTGAAGATGACAACCGCGGAGTCCCGTCTTTTGAGTGAGATTTACG
AACCCTCAGGTCAAATACACGTGAATCATGTACTCGCCTATAGTTGAGTT
ACCGGTGATGGGAAGGACGCAAGGGTTTACGTTCTGCGCGCCCGTCGCGC
TAGCTATATCGGAGCATAGTTTTTCCTTTCGAAAATGAAGTCCAACCACC
CACCTTCGTCAGTTCTTGCACAATACCTGGTATGATATACGTAGCCTAAT
CTACTAATGTCCCATGTTTTTTTTATACACCCGGAGAAATACAGAGGCTA
CATCGTCCATCAGTACATACAAACTATTATAGAAGCTTATAACACAACAA
AGAGAATAATCGAAAAGAAAACCTGATCAAAATTCTACAGGGGTCTACAC
AAGAGGCGGTCAGAATTGAGCCTCGACGTCTAAAAAGCTTCTAAACTGAC
CAGATATTATGTGTCAGGAAATCCCGTTCCTCCCATTGTTGGTCTTTGGA
AAATTGTCGGGGGTGGCAGGGTGGACACAAGTCTGACCCTGTTTGGCGTC
TTCCTTTTGCCCATTCCTTTTCAAAGTTATCTCTACTTCATACACGCCCT
TTGAACACCACACCAAGCGAAAATCGAAAACTAAGCTGAGTGTAAGGCGC
CATTTTGACATTCAAGTGCCGCGGCACCCACGTGTCCTTGCTTTCTTTAC
ACACTGCTGTAATTGTCGCTTGTTTTTGGCATGACCTACATTGATCAAGG
CTGGCGTAGCATCGTCGAGTGTGGCACCCGAGAAACCTTCAATGAAGCAA
GAGAAGCCTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig91:73634..74844-

>mRNA_F-serratus_M_contig91.20497.1 ID=mRNA_F-serratus_M_contig91.20497.1|Name=mRNA_F-serratus_M_contig91.20497.1|organism=Fucus serratus male|type=CDS|length=444bp|location=Sequence derived from alignment at F-serratus_M_contig91:73634..74844- (Fucus serratus male)
AGTCCGACCCAGGGTCCAAGAAACCAGAGGCCTCGCCCCGGCAGACGCGA
CGGAAACAAAAAAACAGACCTTAATCGGCGAAGCCCAAAACAGGAGAGGA
TTCGACAAAAACAACGACAACGAAGAACAGGGAGATCAACACTGCTCCGT
CATACTGCCGAGTCCGACCCAGGGTCCAAGAAACCAGAGGCCTCGCCCCG
GCAGACGCGACGGAAACAAAAAAACAGACCTTAATCGGCGAAGCCCAAAA
CAGGAGAGGATTCGACAAAAACAACGACAACGAAGAACAGGGAGATCAAC
ACTGCTCCGTCATACTGCCGGCTGGCGTAGCATCGTCGAGTGTGGCACCC
GAGAAACCTTCAATGAAGCAAGAGAAGCCTAAGCTGGCGTAGCATCGTCG
AGTGTGGCACCCGAGAAACCTTCAATGAAGCAAGAGAAGCCTAA
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