mRNA_F-serratus_M_contig904.20466.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig904.20466.1
Unique NamemRNA_F-serratus_M_contig904.20466.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig904.20466.1 vs. uniprot
Match: A0A6H5L3G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G2_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 7.070e-25
Identity = 86/213 (40.38%), Postives = 105/213 (49.30%), Query Frame = -1 
Query:    4 VSRRFCVGRVQFAGRGLVHRLPWPEDALDRTVIPESVLPRLCTP----STAKRKIQDGDDHQTNGISQWNGGSRFKDRVPRKESHRDGDGGVRGAGIVINGEGGGGGDKVKEDAAASRGARHSWCDRRSDRVEDFAQGNCECPCFCGRSVSGSNCSAFIGREGGAAADLSRVEQLVARAAQARGCAYGVEWVARATEESPG-LSVPRALDALD 627
            +SRRFCVGRVQ+AGRGLVHRLPWP D   R V+PESVL RL       S  KRK +        G+            +  + S   GDG  R      NG      D+  +++  +  A+    +    + ED +      PC CGR   G +         G   DLSRV QLV      RGCA GV++VARATE SPG LSV  ALD LD
Sbjct:  551 ISRRFCVGRVQYAGRGLVHRLPWPGDPQPRAVVPESVLIRLAAAVGAGSNVKRKREGDGRGDDGGVG-----------LVEESSGSVGDGWRRQIDSTSNG------DRFCDESTIAGNAKGGRWNPGHPQAEDAS------PCCCGRGHRGGS--------RGPPVDLSRVGQLVGGGGMERGCALGVDFVARATERSPGFLSVSGALDLLD 732
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig904.20466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3G2_9PHAE7.070e-2540.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig904contigF-serratus_M_contig904:137847..138584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size740
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932638.4918027-CDS-F-serratus_M_contig904:137846..1383411622932638.4918027-CDS-F-serratus_M_contig904:137846..138341Fucus serratus maleCDSF-serratus_M_contig904 137847..138341 +
1690964398.6906471-CDS-F-serratus_M_contig904:137846..1383411690964398.6906471-CDS-F-serratus_M_contig904:137846..138341Fucus serratus maleCDSF-serratus_M_contig904 137847..138341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932638.5073876-UTR-F-serratus_M_contig904:138341..1385841622932638.5073876-UTR-F-serratus_M_contig904:138341..138584Fucus serratus maleUTRF-serratus_M_contig904 138342..138584 +
1690964398.7045095-UTR-F-serratus_M_contig904:138341..1385841690964398.7045095-UTR-F-serratus_M_contig904:138341..138584Fucus serratus maleUTRF-serratus_M_contig904 138342..138584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig904.20466.1prot_F-serratus_M_contig904.20466.1Fucus serratus malepolypeptideF-serratus_M_contig904 137847..138341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig904.20466.1

>prot_F-serratus_M_contig904.20466.1 ID=prot_F-serratus_M_contig904.20466.1|Name=mRNA_F-serratus_M_contig904.20466.1|organism=Fucus serratus male|type=polypeptide|length=165bp
AIQGVQRAGHREPRRLFGRPRHPLNTVRATACLRRSRNELLHAREICRSA
PFSTNERATVAAADASATETRTLAVPLGKILHPIATPIAPTVPCTPRRRG
VLLHLVAAASSFAVDDDSRSAHASISIPVTLFARNAIFKTATAVPLADPV
CLVIVSILYLSFRR*
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mRNA from alignment at F-serratus_M_contig904:137847..138584+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig904.20466.1 ID=mRNA_F-serratus_M_contig904.20466.1|Name=mRNA_F-serratus_M_contig904.20466.1|organism=Fucus serratus male|type=mRNA|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig904:137847..138584+ (Fucus serratus male)
GCAATCCAAGGCGTCCAACGCGCGGGGCACCGAGAGCCCCGGCGACTCTT
CGGTCGCCCTCGCCACCCACTCAACACCGTACGCGCAACCGCGTGCCTGC
GCCGCTCGCGCAACGAGCTGCTCCACGCGCGAGAGATCTGCCGCAGCGCC
CCCTTCTCGACCAATGAACGCGCTACAGTTGCTGCCGCTGACGCTTCGGC
CACAGAAACACGGACACTCGCAGTTCCCCTGGGCAAAATCCTCCACCCTA
TCGCTACGCCTATCGCACCAACTGTGCCTTGCACCCCTCGACGCCGCGGC
GTCCTCCTTCACCTTGTCGCCGCCGCCTCCTCCTTCGCCGTTGATGACGA
TTCCCGCTCCGCGCACGCCTCCATCTCCATCCCGGTGACTCTCTTTGCGC
GGAACGCGATCTTTAAAACGGCTACCGCCGTTCCATTGGCTGATCCCGTT
TGTTTGGTGATCGTCTCCATCCTGTATCTTTCGTTTCGCCGTTGACGGAG
TGCAAAGTCTTGGCAGAACGGACTCGGGGATCACCGTCCGGTCTAAGGCG
TCCTCCGGCCACGGAAGGCGGTGAACGAGGCCCCTGCCGGCGAACTGAAC
GCGCCCCACACAGAACCGCCTCGAAACCTTCCACCGTCCCAGGTAGTTCG
TTCGTTCCATGCGCGTGCATGGGTGGGGGACAGGGGAAAGGGGAAAAGAC
CCGTCGTAACGGCGAGAGCGTATGAGGAGTTACTTTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig904:137847..138584+

>mRNA_F-serratus_M_contig904.20466.1 ID=mRNA_F-serratus_M_contig904.20466.1|Name=mRNA_F-serratus_M_contig904.20466.1|organism=Fucus serratus male|type=CDS|length=990bp|location=Sequence derived from alignment at F-serratus_M_contig904:137847..138584+ (Fucus serratus male)
GCAATCCAAGGCGTCCAACGCGCGGGGCACCGAGAGCCCCGGCGACTCTT
CGGTCGCCCTCGCCACCCACTCAACACCGTACGCGCAACCGCGTGCCTGC
GCCGCTCGCGCAACGAGCTGCTCCACGCGCGAGAGATCTGCCGCAGCGCC
CCCTTCTCGACCAATGAACGCGCTACAGTTGCTGCCGCTGACGCTTCGGC
CACAGAAACACGGACACTCGCAGTTCCCCTGGGCAAAATCCTCCACCCTA
TCGCTACGCCTATCGCACCAACTGTGCCTTGCACCCCTCGACGCCGCGGC
GTCCTCCTTCACCTTGTCGCCGCCGCCTCCTCCTTCGCCGTTGATGACGA
TTCCCGCTCCGCGCACGCCTCCATCTCCATCCCGGTGACTCTCTTTGCGC
GGAACGCGATCTTTAAAACGGCTACCGCCGTTCCATTGGCTGATCCCGTT
TGTTTGGTGATCGTCTCCATCCTGTATCTTTCGTTTCGCCGTTGAGCAAT
CCAAGGCGTCCAACGCGCGGGGCACCGAGAGCCCCGGCGACTCTTCGGTC
GCCCTCGCCACCCACTCAACACCGTACGCGCAACCGCGTGCCTGCGCCGC
TCGCGCAACGAGCTGCTCCACGCGCGAGAGATCTGCCGCAGCGCCCCCTT
CTCGACCAATGAACGCGCTACAGTTGCTGCCGCTGACGCTTCGGCCACAG
AAACACGGACACTCGCAGTTCCCCTGGGCAAAATCCTCCACCCTATCGCT
ACGCCTATCGCACCAACTGTGCCTTGCACCCCTCGACGCCGCGGCGTCCT
CCTTCACCTTGTCGCCGCCGCCTCCTCCTTCGCCGTTGATGACGATTCCC
GCTCCGCGCACGCCTCCATCTCCATCCCGGTGACTCTCTTTGCGCGGAAC
GCGATCTTTAAAACGGCTACCGCCGTTCCATTGGCTGATCCCGTTTGTTT
GGTGATCGTCTCCATCCTGTATCTTTCGTTTCGCCGTTGA
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