mRNA_F-serratus_M_contig9.20344.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig9.20344.1 vs. uniprot
Match: D8LN65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN65_ECTSI) HSP 1 Score: 219 bits (559), Expect = 3.490e-62 Identity = 147/385 (38.18%), Postives = 199/385 (51.69%), Query Frame = 3
Query: 375 LIVDKYDAELRTDRLPEDRETFWIAKYQPNGDRDEVRNQMYLRWK-DGRVFGLGFEKVRQLCKIKGQYKYNRASNQTVVAMTCKFSNEFDKVMFHGCSNGTSFMGNCYMHEIDRFSLVATIPGLRHTSACKFKGSFLLQKMEGMGDPSLRVRLHSRRVHKWAGDRFPDDTISPPTSPLYYRNERRPG--------------------EGYDSVDGDAASRGKSDGGASRSSRSRSRGRVKRALSRLNPFSRR----RRRRRHFGFDDPTLTPTDVRAEER------------EFPPWVQKGVDYDDDQEEDE---DPYGGSLSR-------------------GRLPISPGR--TPKGKPSLSPNDKLNYLEIEGIPGRSGPAMV 1346
L+ KY+ +RTD +PED+ET W KYQPNG+R EV MYLR++ G V G+G+E+ R+LCKI G+YK N +NQT +A+ CKFSNE D V+FHG NGT +GNCY+ EID FS + IPG+R S K+KGSFL+ K GMG LR +H+RRVHKWAG FPDD++ P SP+ R PG GY V+G ++RG G R +RS R + ++ ++ RR F PTL D++ ++R E PPWV++G ++ E E +GG R G P S R T GK S P NYL++EG+ + P ++
Sbjct: 2 LVNSKYEDPIRTDSIPEDQETLWRVKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKITGKYKLNARTNQTALALQCKFSNECDTVLFHGWGNGTGLVGNCYIREIDPFSAFSGIPGIRQLSRDKYKGSFLMLKQSGMGGAKLRSMVHTRRVHKWAGACFPDDSVPMPQSPM-----RSPGATPRSGITPKSSRGRGAGRENGYSPVEGQGSTRG----GRGRRGFARSTARPGSPATSQGGSNKSDSLGKKIRRLFHRKRPTL---DIQLQDRTSDWSTRGSTSGEVPPWVRQGTPGSEEAEMTELRGGYHGGHARRRTGYDDXXXXXXXXXGSMYGYSPSSTSRPSTAGGKRS-KPVQTANYLDLEGVRASTTPCLL 373
BLAST of mRNA_F-serratus_M_contig9.20344.1 vs. uniprot
Match: A0A6H5KY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY23_9PHAE) HSP 1 Score: 184 bits (466), Expect = 9.800e-51 Identity = 91/188 (48.40%), Postives = 117/188 (62.23%), Query Frame = 3
Query: 174 PSTVTILGFDIPTLYIAGA-AAVLAXXXXXXXXXXXCRKKTKIVASEQFIWPSSSRFLKKTDPGHPPKLIVDKYDAELRTDRLPEDRETFWIAKYQPNGDRDEVRNQMYLRWKDGRVFGLGFEKVRQLCKIKGQYKYNRASNQTVVAMTCKFSNEFDKVMFHGCSNGTSFMGNCYMHEIDRFSLVATI 734
P TV + G D+PT +A A L C + SE F WPSSSRFLK DP +PPKL V++Y+ +RTD L D E WI YQP+G R E+ MYLR+++G V+G+GFE+ R+ CKI G+YK N +NQ V MTC+FSN+ D VMFHG NGT +GNCY+ E+DRFS + I
Sbjct: 8 PDTVNVFGVDVPTFALAVFFGAGLLAVCVFCCCSKHCGSEDP-PTSESFKWPSSSRFLKMVDPRNPPKLFVNRYEDPIRTDVLVLDEEANWIVTYQPSGGRHEIVQHMYLRFREGAVYGVGFEEGRKACKISGKYKRNEGANQMAVVMTCRFSNDVDTVMFHGSGNGTGLVGNCYIRELDRFSSFSQI 194
BLAST of mRNA_F-serratus_M_contig9.20344.1 vs. uniprot
Match: D8LAZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ0_ECTSI) HSP 1 Score: 168 bits (426), Expect = 7.030e-44 Identity = 87/190 (45.79%), Postives = 110/190 (57.89%), Query Frame = 3
Query: 330 SSRFLKKTDPGHPPKLIVDKYDAELRTDRLPEDRETFWIAKYQPNGDRDEVRNQMYLRWKDGRVFGLGFEKVRQLCKIKGQYKYNRASNQTVVAMTCKFSNEFDKVMFHGCSNGTSFMGNCYMHEIDRFSLVATIPGLRHTSACKFKGSFLLQKMEGMGDPSLRVRLHSRRVHKWAGDRFPDDTISPPTS 899
SSRFLK DP +PPKL V+KY+ +RTD L D E WI YQP+G R EV MYLR+++G V+G+GFE+ R+ CKI G+YK N +NQ V MTC+ S PGLR+ A K+K SFL+ KMEG+GD +R RLH+ RV KWAG+ +PDD I P S
Sbjct: 3 SSRFLKTVDPRNPPKLFVNKYEDPIRTDVLVLDEEANWIVTYQPSGGRYEVVQHMYLRFREGAVYGVGFEEGRKACKISGKYKRNEGANQVAVVMTCRSS-----------------------------------PGLRNMGATKYKASFLMLKMEGIGDTHIRARLHTSRVQKWAGNLYPDDAIPLPAS 157 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig9.20344.1 >prot_F-serratus_M_contig9.20344.1 ID=prot_F-serratus_M_contig9.20344.1|Name=mRNA_F-serratus_M_contig9.20344.1|organism=Fucus serratus male|type=polypeptide|length=400bp MSFLYDSFPSTVTILGFDIPTLYIAGAAAVLAILLCVCCYCRCCRKKTKIback to top mRNA from alignment at F-serratus_M_contig9:285643..312317+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig9.20344.1 ID=mRNA_F-serratus_M_contig9.20344.1|Name=mRNA_F-serratus_M_contig9.20344.1|organism=Fucus serratus male|type=mRNA|length=26675bp|location=Sequence derived from alignment at F-serratus_M_contig9:285643..312317+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig9:285643..312317+ >mRNA_F-serratus_M_contig9.20344.1 ID=mRNA_F-serratus_M_contig9.20344.1|Name=mRNA_F-serratus_M_contig9.20344.1|organism=Fucus serratus male|type=CDS|length=2400bp|location=Sequence derived from alignment at F-serratus_M_contig9:285643..312317+ (Fucus serratus male)back to top |