mRNA_F-serratus_M_contig9.20340.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig9.20340.1
Unique NamemRNA_F-serratus_M_contig9.20340.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:123001..123809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size246
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20340.1prot_F-serratus_M_contig9.20340.1Fucus serratus malepolypeptideF-serratus_M_contig9 123001..123789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932610.6612506-CDS-F-serratus_M_contig9:123000..1231201622932610.6612506-CDS-F-serratus_M_contig9:123000..123120Fucus serratus maleCDSF-serratus_M_contig9 123001..123120 +
1690964385.2838142-CDS-F-serratus_M_contig9:123000..1231201690964385.2838142-CDS-F-serratus_M_contig9:123000..123120Fucus serratus maleCDSF-serratus_M_contig9 123001..123120 +
1622932610.6832013-CDS-F-serratus_M_contig9:123663..1237891622932610.6832013-CDS-F-serratus_M_contig9:123663..123789Fucus serratus maleCDSF-serratus_M_contig9 123664..123789 +
1690964385.2939796-CDS-F-serratus_M_contig9:123663..1237891690964385.2939796-CDS-F-serratus_M_contig9:123663..123789Fucus serratus maleCDSF-serratus_M_contig9 123664..123789 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932610.8413005-UTR-F-serratus_M_contig9:123789..1238091622932610.8413005-UTR-F-serratus_M_contig9:123789..123809Fucus serratus maleUTRF-serratus_M_contig9 123790..123809 +
1690964385.3058858-UTR-F-serratus_M_contig9:123789..1238091690964385.3058858-UTR-F-serratus_M_contig9:123789..123809Fucus serratus maleUTRF-serratus_M_contig9 123790..123809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig9.20340.1

>prot_F-serratus_M_contig9.20340.1 ID=prot_F-serratus_M_contig9.20340.1|Name=mRNA_F-serratus_M_contig9.20340.1|organism=Fucus serratus male|type=polypeptide|length=82bp
LSRQELTPQERLRHKFTSVQRRIHERSFQQEIRWNGALIEVARRPYESTA
GGIPLSIPCQWPLATASARLGDFCSSPLGAF*
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mRNA from alignment at F-serratus_M_contig9:123001..123809+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig9.20340.1 ID=mRNA_F-serratus_M_contig9.20340.1|Name=mRNA_F-serratus_M_contig9.20340.1|organism=Fucus serratus male|type=mRNA|length=809bp|location=Sequence derived from alignment at F-serratus_M_contig9:123001..123809+ (Fucus serratus male)
TTGTCCAGACAAGAACTAACACCTCAAGAGAGACTGCGACACAAGTTCAC
ATCGGTGCAGCGTAGAATACACGAGAGGTCTTTTCAACAAGAGATCCGCT
GGAACGGAGCTCTGATAGAGGTAGGATATGCACGCAGAATTAGAGCAGTT
GCTTCATATTATTTTACTTTGGCATCATATATTGCAGATATTGAACCGCT
GACTGAGCGTTTGGAAAAACTAGACTTCACTATATATAAAGCCTCCCGCC
ACTTACCCCAGAGATTCGTCCGACCACTTAAAGTTTTGTTGTTTCCGTCA
TGCGCCGCGGAGGGCGGCGCTCGTCTTTCCCGTTTATCATTATCACCAGA
GGCTGCCTCGAGTTCGTAGTTGCCTAAAATAGTCCTTGGTTTACTCAATT
CTTGACTCAGGTGCAGCCCACCCTCGTACGATGACGCAGATATCTCCAGG
AAAAAGTACCATGTTCCCATCGTTTAAAAATATATATGCTACTCTATGTC
AATCGACTCAGAATCTTCTGAGCTGTACCGACCTGCTGGTGACTTCTGTG
GTCCGGTGGTGTGTTGCATTTGGCAGTGAGTCGGGCGTAAGATAATGCTG
TGCGGAATATGTTCCTAATATAATGCTTTATATTCATGAATAAATCGTAA
TGGAATTCCGCAGGTTGCACGTCGCCCCTACGAGTCCACCGCGGGTGGCA
TCCCCCTGTCGATTCCCTGTCAATGGCCTCTCGCCACGGCTTCAGCGCGG
CTAGGGGATTTCTGCTCCAGTCCTCTCGGCGCGTTTTGAAGAACTCCAGA
CCAGGCAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig9:123001..123809+

>mRNA_F-serratus_M_contig9.20340.1 ID=mRNA_F-serratus_M_contig9.20340.1|Name=mRNA_F-serratus_M_contig9.20340.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig9:123001..123809+ (Fucus serratus male)
TTGTCCAGACAAGAACTAACACCTCAAGAGAGACTGCGACACAAGTTCAC
ATCGGTGCAGCGTAGAATACACGAGAGGTCTTTTCAACAAGAGATCCGCT
GGAACGGAGCTCTGATAGAGTTGTCCAGACAAGAACTAACACCTCAAGAG
AGACTGCGACACAAGTTCACATCGGTGCAGCGTAGAATACACGAGAGGTC
TTTTCAACAAGAGATCCGCTGGAACGGAGCTCTGATAGAGGTTGCACGTC
GCCCCTACGAGTCCACCGCGGGTGGCATCCCCCTGTCGATTCCCTGTCAA
TGGCCTCTCGCCACGGCTTCAGCGCGGCTAGGGGATTTCTGCTCCAGTCC
TCTCGGCGCGTTTTGAGTTGCACGTCGCCCCTACGAGTCCACCGCGGGTG
GCATCCCCCTGTCGATTCCCTGTCAATGGCCTCTCGCCACGGCTTCAGCG
CGGCTAGGGGATTTCTGCTCCAGTCCTCTCGGCGCGTTTTGA
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