mRNA_F-serratus_M_contig882.20197.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig882.20197.1
Unique NamemRNA_F-serratus_M_contig882.20197.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig882.20197.1 vs. uniprot
Match: D7G2Q9_ECTSI (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q9_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 5.490e-40
Identity = 72/97 (74.23%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:    1 EGQTDPWNTFSTKIAVGMGQMETKVFPAVFPDDFEIEGLRGKEALVQAVVKSIARRESKPPETRSDEELRVLLRQKGEATMQSRMDHAVDEAVKKAL 291
            EG  +PW TF+TK+AVGMGQMETKVFPA FP+DFEIEGLRGK+ALVQAVVK+IAR+E K PETRSD+E+R  LR KGE T+++R D AVDEAVKK L
Sbjct:   94 EGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEVRAALRVKGEQTVKNRTDKAVDEAVKKFL 190
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BLAST of mRNA_F-serratus_M_contig882.20197.1 vs. uniprot
Match: A0A7S0VQZ5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VQZ5_9CRYP)

HSP 1 Score: 71.2 bits (173), Expect = 1.540e-12
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:    1 EGQTDPWNTFSTKIAVGMGQMETKVFPAVFPDDFEIEGLRGKEALVQAVVKSIARRESKPPETRSDEELRVLLRQKGEATMQSRMDHAVDEAVKKAL 291
            EGQ +PW+TF++ IAVGMGQ E K F   FP D+ +  L+GK+   +  VK I ++ +K P+TR +E  R     + EA ++      VD+A++  L
Sbjct:  161 EGQKEPWSTFASNIAVGMGQDEMKSFVVTFPGDYAVPALQGKQVRFETYVKKIMKKVAKDPDTRQEEVQRADAVAQLEAAIERNNLEKVDQALRLEL 257
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig882.20197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2Q9_ECTSI5.490e-4074.23FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ... [more]
A0A7S0VQZ5_9CRYP1.540e-1239.18Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig882contigF-serratus_M_contig882:135148..136341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSecreted hypothetical protein
Ec32 orthologEc-11_003150.1
Exons3
Model size293
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig882.20197.1prot_F-serratus_M_contig882.20197.1Fucus serratus malepolypeptideF-serratus_M_contig882 135148..136341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932569.8078685-CDS-F-serratus_M_contig882:135147..1352521622932569.8078685-CDS-F-serratus_M_contig882:135147..135252Fucus serratus maleCDSF-serratus_M_contig882 135148..135252 +
1690964370.543625-CDS-F-serratus_M_contig882:135147..1352521690964370.543625-CDS-F-serratus_M_contig882:135147..135252Fucus serratus maleCDSF-serratus_M_contig882 135148..135252 +
1622932569.8758323-CDS-F-serratus_M_contig882:135630..1357711622932569.8758323-CDS-F-serratus_M_contig882:135630..135771Fucus serratus maleCDSF-serratus_M_contig882 135631..135771 +
1690964370.5661263-CDS-F-serratus_M_contig882:135630..1357711690964370.5661263-CDS-F-serratus_M_contig882:135630..135771Fucus serratus maleCDSF-serratus_M_contig882 135631..135771 +
1622932569.8942676-CDS-F-serratus_M_contig882:136296..1363411622932569.8942676-CDS-F-serratus_M_contig882:136296..136341Fucus serratus maleCDSF-serratus_M_contig882 136297..136341 +
1690964370.5805597-CDS-F-serratus_M_contig882:136296..1363411690964370.5805597-CDS-F-serratus_M_contig882:136296..136341Fucus serratus maleCDSF-serratus_M_contig882 136297..136341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig882.20197.1

>prot_F-serratus_M_contig882.20197.1 ID=prot_F-serratus_M_contig882.20197.1|Name=mRNA_F-serratus_M_contig882.20197.1|organism=Fucus serratus male|type=polypeptide|length=97bp
EGQTDPWNTFSTKIAVGMGQMETKVFPAVFPDDFEIEGLRGKEALVQAVV
KSIARRESKPPETRSDEELRVLLRQKGEATMQSRMDHAVDEAVKKAL
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mRNA from alignment at F-serratus_M_contig882:135148..136341+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig882.20197.1 ID=mRNA_F-serratus_M_contig882.20197.1|Name=mRNA_F-serratus_M_contig882.20197.1|organism=Fucus serratus male|type=mRNA|length=1194bp|location=Sequence derived from alignment at F-serratus_M_contig882:135148..136341+ (Fucus serratus male)
GAAGGGCAAACTGACCCATGGAACACGTTTTCGACGAAGATTGCTGTTGG
GATGGGACAGATGGAGACCAAGGTGTTTCCCGCAGTGTTCCCCGACGATT
TCGAGGTATGCACGAGTCGGATTACAACAAGGCATGCACGAAGACGCGGG
CAGCAAGCATTGAGTGCCGTTTCTAAAAGAATATATATATATTCCTGCCG
TAAACAAGCCTGGCAAGGTTTGGTCGTTCAGGGTTTGTCGCCGTAAAGGT
TTGACGCGTGTATAGGAAAAATAAGCGAAACGCCACACGCTCACCGCCGA
CCGTACGTCCCAGCATTTTTTTCGCTAGGTCGGCACCTTTTGCAGGCTTG
GAAGAATAGTGCCACAAAATATCTCGACCCCACACAGGGTGACCTCAAAA
AAGTTTGCGATCCGTACGCCCCGTCGTGTGGTCTGCTATGCTTCCACGGC
TACGTCCTGCATGGCGCGAGAGAGAGAGAGTAGATCGAGGGTTTGCGAGG
TAAGGAGGCGTTAGTGCAGGCGGTGGTAAAGAGCATCGCCAGGAGGGAAA
GCAAGCCGCCGGAGACGAGGAGCGACGAGGAGCTGCGAGTTTTGTTGCGC
CAGAAGGGGGAGGCGACCATGCAGGTAGATTAGATATTCTCTCACTCTGC
CGTCGGGGGGACGAACGATCAAAACACTCTCTCGCTCCCCCGTACCCCGT
TCCCCGGTCAAATGCGTGCGCGGTTTCTCGCATTTTTCTGGCCGCCGAAA
AGTATGAATAGAGTAAAAACGTCCGTTTTTTGGACAGATGTCGGTTGGAA
TTAGAGACGTGTGTCGCCGAGAGTGTTAATGCCCCTTCGCCTTCGATAAA
GCTCACTTCCTGTTTTTCAGCTCCACGTGATATATGCTGGTCGACCGAAC
GCCCAGATTTGCATCACCGAACCACCAGAAGCTCTGAGGGGTTCAACGAT
TGGGGAGGGCTATTTTCGTTCCGTTCCCTCCCAAAACGGGGACAAATATG
TTACATCCCCGCCCCCCCCCCCAATCGTTGAACTGGTCCTCTGTGGCCAG
CCGTGTTTATTTGGCGACAACCGTCGAAGAGGGCCGTAACGATGATCATT
GTGCGGTATTCATCCGTTGTGTGTTGTAACTATTTTCCGCCGCCTGCAGA
GCCGGATGGACCATGCGGTGGACGAGGCCGTTAAAAAGGCCCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig882:135148..136341+

>mRNA_F-serratus_M_contig882.20197.1 ID=mRNA_F-serratus_M_contig882.20197.1|Name=mRNA_F-serratus_M_contig882.20197.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig882:135148..136341+ (Fucus serratus male)
GAAGGGCAAACTGACCCATGGAACACGTTTTCGACGAAGATTGCTGTTGG
GATGGGACAGATGGAGACCAAGGTGTTTCCCGCAGTGTTCCCCGACGATT
TCGAGGAAGGGCAAACTGACCCATGGAACACGTTTTCGACGAAGATTGCT
GTTGGGATGGGACAGATGGAGACCAAGGTGTTTCCCGCAGTGTTCCCCGA
CGATTTCGAGATCGAGGGTTTGCGAGGTAAGGAGGCGTTAGTGCAGGCGG
TGGTAAAGAGCATCGCCAGGAGGGAAAGCAAGCCGCCGGAGACGAGGAGC
GACGAGGAGCTGCGAGTTTTGTTGCGCCAGAAGGGGGAGGCGACCATGCA
GATCGAGGGTTTGCGAGGTAAGGAGGCGTTAGTGCAGGCGGTGGTAAAGA
GCATCGCCAGGAGGGAAAGCAAGCCGCCGGAGACGAGGAGCGACGAGGAG
CTGCGAGTTTTGTTGCGCCAGAAGGGGGAGGCGACCATGCAGAGCCGGAT
GGACCATGCGGTGGACGAGGCCGTTAAAAAGGCCCTGAGCCGGATGGACC
ATGCGGTGGACGAGGCCGTTAAAAAGGCCCTG
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