mRNA_F-serratus_M_contig88.20174.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20174.1
Unique NamemRNA_F-serratus_M_contig88.20174.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:648411..649013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size604
Cds size603
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932560.4283497-CDS-F-serratus_M_contig88:648410..6490131622932560.4283497-CDS-F-serratus_M_contig88:648410..649013Fucus serratus maleCDSF-serratus_M_contig88 648411..649013 +
1690964365.9334474-CDS-F-serratus_M_contig88:648410..6490131690964365.9334474-CDS-F-serratus_M_contig88:648410..649013Fucus serratus maleCDSF-serratus_M_contig88 648411..649013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20174.1prot_F-serratus_M_contig88.20174.1Fucus serratus malepolypeptideF-serratus_M_contig88 648411..649013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20174.1

>prot_F-serratus_M_contig88.20174.1 ID=prot_F-serratus_M_contig88.20174.1|Name=mRNA_F-serratus_M_contig88.20174.1|organism=Fucus serratus male|type=polypeptide|length=201bp
MATASCSGEGDRGAAVKEAPVLRCSAIRRSMGSVLRETHIAKLSRWNSQV
PGEIGVTTKTRDEVTDKNSGKLSVAKVEAVEGLVLPEPLMAVGLSSSTTM
EATFLDDQGDKECALESFSSLSDKAVAVDRRAPTAASATCSTGNDSSGLP
SGDLRCSPATATATLLDHTPEAEFMRRTGPWNVANAPARSVDGEINRAQT
E
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mRNA from alignment at F-serratus_M_contig88:648411..649013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20174.1 ID=mRNA_F-serratus_M_contig88.20174.1|Name=mRNA_F-serratus_M_contig88.20174.1|organism=Fucus serratus male|type=mRNA|length=603bp|location=Sequence derived from alignment at F-serratus_M_contig88:648411..649013+ (Fucus serratus male)
ATGGCAACTGCGAGCTGCTCTGGGGAAGGGGATAGGGGAGCAGCCGTCAA
GGAGGCGCCGGTCCTACGTTGCTCGGCCATACGCCGTTCGATGGGCTCGG
TTTTGAGGGAGACTCATATCGCGAAACTCTCGCGATGGAATTCTCAAGTC
CCCGGCGAAATCGGTGTGACCACGAAAACGAGAGACGAGGTGACCGATAA
AAACAGCGGTAAATTGTCAGTCGCGAAGGTCGAGGCGGTCGAGGGGTTGG
TACTTCCGGAGCCCCTGATGGCGGTGGGTTTATCTTCGAGCACAACCATG
GAGGCGACTTTCTTGGATGATCAAGGAGACAAGGAGTGTGCCTTGGAGAG
TTTCTCTTCTCTCTCAGACAAGGCTGTCGCCGTTGATCGTAGAGCTCCTA
CGGCCGCAAGTGCTACTTGCTCGACAGGGAATGACAGCAGCGGGCTACCG
AGTGGTGATTTGAGGTGCTCACCGGCGACTGCGACTGCTACGCTGCTCGA
CCACACGCCGGAAGCGGAGTTTATGCGGCGCACGGGCCCTTGGAATGTTG
CAAATGCTCCCGCGCGCAGTGTCGACGGGGAAATAAATCGCGCACAAACG
GAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:648411..649013+

>mRNA_F-serratus_M_contig88.20174.1 ID=mRNA_F-serratus_M_contig88.20174.1|Name=mRNA_F-serratus_M_contig88.20174.1|organism=Fucus serratus male|type=CDS|length=1206bp|location=Sequence derived from alignment at F-serratus_M_contig88:648411..649013+ (Fucus serratus male)
ATGGCAACTGCGAGCTGCTCTGGGGAAGGGGATAGGGGAGCAGCCGTCAA
GGAGGCGCCGGTCCTACGTTGCTCGGCCATACGCCGTTCGATGGGCTCGG
TTTTGAGGGAGACTCATATCGCGAAACTCTCGCGATGGAATTCTCAAGTC
CCCGGCGAAATCGGTGTGACCACGAAAACGAGAGACGAGGTGACCGATAA
AAACAGCGGTAAATTGTCAGTCGCGAAGGTCGAGGCGGTCGAGGGGTTGG
TACTTCCGGAGCCCCTGATGGCGGTGGGTTTATCTTCGAGCACAACCATG
GAGGCGACTTTCTTGGATGATCAAGGAGACAAGGAGTGTGCCTTGGAGAG
TTTCTCTTCTCTCTCAGACAAGGCTGTCGCCGTTGATCGTAGAGCTCCTA
CGGCCGCAAGTGCTACTTGCTCGACAGGGAATGACAGCAGCGGGCTACCG
AGTGGTGATTTGAGGTGCTCACCGGCGACTGCGACTGCTACGCTGCTCGA
CCACACGCCGGAAGCGGAGTTTATGCGGCGCACGGGCCCTTGGAATGTTG
CAAATGCTCCCGCGCGCAGTGTCGACGGGGAAATAAATCGCGCACAAACG
GAAATGGCAACTGCGAGCTGCTCTGGGGAAGGGGATAGGGGAGCAGCCGT
CAAGGAGGCGCCGGTCCTACGTTGCTCGGCCATACGCCGTTCGATGGGCT
CGGTTTTGAGGGAGACTCATATCGCGAAACTCTCGCGATGGAATTCTCAA
GTCCCCGGCGAAATCGGTGTGACCACGAAAACGAGAGACGAGGTGACCGA
TAAAAACAGCGGTAAATTGTCAGTCGCGAAGGTCGAGGCGGTCGAGGGGT
TGGTACTTCCGGAGCCCCTGATGGCGGTGGGTTTATCTTCGAGCACAACC
ATGGAGGCGACTTTCTTGGATGATCAAGGAGACAAGGAGTGTGCCTTGGA
GAGTTTCTCTTCTCTCTCAGACAAGGCTGTCGCCGTTGATCGTAGAGCTC
CTACGGCCGCAAGTGCTACTTGCTCGACAGGGAATGACAGCAGCGGGCTA
CCGAGTGGTGATTTGAGGTGCTCACCGGCGACTGCGACTGCTACGCTGCT
CGACCACACGCCGGAAGCGGAGTTTATGCGGCGCACGGGCCCTTGGAATG
TTGCAAATGCTCCCGCGCGCAGTGTCGACGGGGAAATAAATCGCGCACAA
ACGGAA
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